BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65585.1

Length=836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913226 jgi|Araly1|913226|Al_scaffold_0001_3480                   65.8    5e-10


> Ahg913226 jgi|Araly1|913226|Al_scaffold_0001_3480
Length=300

 Score = 65.8 bits (35),  Expect = 5e-10
 Identities = 41/44 (93%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  168  ATGTGGAGGATATGGAAATCAAGGAATGCTTTCCTCTTTCAAAA  211
            |||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct  1    ATGTGGAGGATATGGAAATCAAGGAATGATTTTCTCTTCCAAAA  44



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30917685687


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5