BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65590.1
Length=1922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475658 jgi|Araly1|475658|fgenesh2_kg.2__788__AT1G65590.1 3009 0.0
> Ahg475658 jgi|Araly1|475658|fgenesh2_kg.2__788__AT1G65590.1
Length=1918
Score = 3009 bits (1629), Expect = 0.0
Identities = 1833/1930 (95%), Gaps = 20/1930 (1%)
Strand=Plus/Plus
Query 1 CTCCTCCatttttgctacatttttttttc-tttgattaaaaacatttttactatttttcg 59
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCCATTTTTGCTACA-GTTTTTTTCATTTGATTAAAAACATTTTTACTATTTTTCG 59
Query 60 ctt-tttgctatttCCTT-GTAACTTAAAAGAAGAAAAAATGAGAGGTAGCGGAGCAAAG 117
|| |||||||||||||| || ||||| ||| | |||||||||||||||| |||||||||
Sbjct 60 -TTCTTTGCTATTTCCTTGGT-ACTTAGAAG-A-AAAAAATGAGAGGTAGAGGAGCAAAG 115
Query 118 ATCGCCGGCGTTTTGCCGTTGTTTATGCTATTCATCGCCGGAACAATCTCCGCCTTTGAA 177
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 116 ATCGCCGGCGTATTGCCGTTGTTTATGCTTTTCATCGCCGGAACAATCTCCGCCTTTGAA 175
Query 178 GACATAGAGAGGTTGAGGATTTGGCCGTTACCGGCACAAGTTAGCCACGGTGGCCGGAGA 237
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GACATCGAGAGGTTAAGGATTTGGCCGTTACCGGCACAAGTTAGCCACGGTGGCCGGAGA 235
Query 238 ATGTATCTAAGTGGAGATTTCAAGCTTGTTACGGAGGGAAGCAAATATGGAGACGCCTCA 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 ATGTATCTAAGTGGAGATTTCAAGCTTGTTACGGAGGGAAGCAAATATGGAGACACCTCA 295
Query 298 GGGATTTTGAAAGAAGGATTTGATAGAATGCTTGGTGTTGTGAGGCTGAGCCACGTCATC 357
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 296 GGGATTTTGAAAGAAGGATTTGATAGAATGCTTAGTATTGTGAGGCTGAGCCACGTCATC 355
Query 358 TCCGGTGACCGGAATTCTTCAGGCACCGGTGGATCTGCTTTGCTTCAGGGACTTCACGTC 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 356 TCCGGTGACCGGAATTCTTCAGGCTCCGGTGGATCTGCTTTGCTTCAGGGACTCCATGTC 415
Query 418 ATCATCTCCTCCTCTACCGATGAGTTGGAATATGGAGCAGACGAGTCGTACAAATTAGTG 477
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCATCTCTTCCTCCACCGATGAGTTGGAATATGGAGCAGACGAGTCGTACAAATTAGTG 475
Query 478 GTTCCATCTCCAGAGAAGCCGTCTTATGCACAACTTGAGGCCAAGAGTGTTTATGGTGCA 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 476 GTTCCATCTCCAGAGAAGCCGTCTTATGCACAACTTGAGGCAAAGAGTGTTTACGGTGCG 535
Query 538 TTGCACGGTCTACAGACATTTAGCCAGTTATGTCATTTTAATTTGAAGAAAAAGGTCATA 597
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 536 TTGCATGGTCTACAGACATTTAGCCAGTTATGTCATTTTAATTTGAAGAAAAAGGTAATA 595
Query 598 GAGATTCTAATGACTCCATGGAATATCATAGACCAGCCTAGATTCTCTTACCGTGGCCTT 657
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 GAGATTCTAATGACTCCATGGAATATCACAGACCAGCCTAGATTCTCTTACCGTGGCCTT 655
Query 658 TTAATCGATACATCCCGACATTATTTGCCACTTCCGGTTATAAAGAACGTGATTGATTCC 717
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 CTAATCGATACATCCCGACATTATTTGCCACTTCCCGTTATAAAGAACGTGATTGATTCC 715
Query 718 ATGACATATGCCAAACTTAATGTGTTACATTGGCACATTGTGGATACACAATCATTTCCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATGACATATGCCAAACTTAATGTGTTACATTGGCACATTGTGGATACACAATCATTTCCT 775
Query 778 TTAGAGATACCTTCTTACCCAAAGCTATGGAACGGCGCTTACTCTTCCTCTCAGCGATAC 837
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 776 TTAGAGATACCTTCTTATCCAAAGCTATGGAACGGTGCTTACTCTTCCTCTCAGAGATAC 835
Query 838 ACCTTCGAAGACGCTGCTGAAATCGTCAATTATGCTCGGCGACGAGGGATCCATGTCTTG 897
|| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 836 ACATTCGAAGACGCTGCTGAAATAGTCAATTATGCCCAGCGACGAGGGATCCATGTCTTG 895
Query 898 GCTGAGATTGATGTTCCAGGACATGCTCTCTCATGGGGAAAGGGATATCCTGCCTTGTGG 957
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GCTGAGATTGATGTTCCAGGACATGCTCTCTCATGGGGAAAAGGATATCCTGCCTTGTGG 955
Query 958 CCCTCCAAGAATTGTCAAGAACCACTTGACGTGAGCAGTGACTTCACATTCAAAGTCATT 1017
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 956 CCCTCCAAGAATTGTCAAGAACCCCTTGACGTGAGCAGTGACTTTACATTCAAGGTCATT 1015
Query 1018 GATGGCATTCTCTCTGATTTCAGCAAGATCTTTAAGTTTAAATTTGTCCACTTGGGTGGT 1077
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1016 GATGGCATTCTTTCTGATTTCAGCAAGATCTTTAAGTTTAAGTTTGTCCACTTGGGAGGT 1075
Query 1078 GATGAAGTAAATACAACTTGTTGGTCTGCAACACCGCGAATAGCCCAATGGCTTAAAAAA 1137
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1076 GACGAAGTAAACACAACTTGTTGGTCTGCAACGCCGCGAATAGCCCAATGGCTTAAAAAA 1135
Query 1138 CATCGGATGAGTGAAAAAGAAGCCTATCAATATTTCGTGTTGCGGGCGCAAAAAATCGCC 1197
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1136 CATCGGATGAGTGAAGGAGAAGCCTATCAATATTTTGTGTTGCGGGCACAAAAAATCGCT 1195
Query 1198 TTGTCTCACGGATATGAAATTATCAACTGGGAAGAGACCTTCATCAATTTTGGAAGCAAA 1257
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 TTGTCTCACGGATATGAAATTATCAACTGGGAAGAAACCTTCATCAATTTTGGAAGCAAA 1255
Query 1258 TTAAAC-CGGAAAACCGTGGTTCACAACTGGCTTAACACAGGACTTGTTGAGAATGTGAC 1316
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1256 TTAAACTCG-AAAACCGTGGTTCACAACTGGCTTAATACAGGACTTGTTGAGAATGTGAC 1314
Query 1317 TGCGTCCGGTTTAAGGTGTATAGTTAGTAACCAAGAATTTTGGTATTTGGATCATATAGA 1376
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 GGCCTCCGGTTTAAGGTGTATAGTTAGTAACCAAGAATATTGGTATTTGGATCATATAGA 1374
Query 1377 CGCACCTTGGCAAGGCTTTTACGCAAACGAGCCATTTCAAAACATAACGGATAAAAAGCA 1436
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1375 CGCACCTTGGCAAGGCTTTTACGCAAACGAGCCACTTCAAAACATAACGGATAAAAAACA 1434
Query 1437 ACAAAGTCTAGTACTTGGTGGCGAGGTTTGCATGTGGGGTGAACATATTGATGCTTCTGA 1496
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1435 ACAAAGTCTAGTACTTGGTGGTGAAGTTTGCATGTGGGGTGAACATATTGATGCTTCTGA 1494
Query 1497 CATTGAACAAACCATTTGGCCTCGCGCTGCCGCAGCTGCAGAGCGGTTGTGGACACCCTA 1556
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1495 CATTGAACAAACCATTTGGCCTCGTGCTGCCGCAGCTGCAGAGCGGTTGTGGACACCCTA 1554
Query 1557 TGCAAAATTGGCTAAAAATCCCAACAATGTAACGACGAGGTTGGCTCACTTCAGATGTCT 1616
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1555 TGCAAAGTTGGCTAAAAATCCCAACAAGGTAACGACGAGGTTGGCTCACTTCAGATGCCT 1614
Query 1617 ATTGAATCAAAGAGGAGTTGCAGCTGCACCTTTGGTTGGTGGCGGACGAGTTGTGCCTTT 1676
||| |||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1615 ATTAAATCGACGAGGTGTTGCAGCTGCACCTTTGGTTGGTGGCGGACGAGTCGTGCCTTT 1674
Query 1677 TGAACCAGGTTCTTGTCTCGCTCAGTGATTCGAA-AGATTAGCATTGTAGAATATATTAC 1735
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1675 AGAACCAGGTTCTTGTCTCGCTCAGTGATTCGAACAGATTAGCATTTTAGAATATATTAC 1734
Query 1736 AGTCAGCAACACCTTGGTCAATTCAGGTTGAA-ATGAACCCCTACAAAAAAGGGATACTT 1794
||||||||||||||||||||||||||||| || ||||| |||||||| | |||||||||
Sbjct 1735 AGTCAGCAACACCTTGGTCAATTCAGGTT-AATATGAATCCCTACAATTATGGGATACTT 1793
Query 1795 TGAAttt-ttttCTTGGTTGATTTTTTAGTGGTAGAAATATTCCTTCTTATTTGGGAA-T 1852
||| ||| |||||||||||||||| |||||||||| |||| ||| ||||||| || |
Sbjct 1794 TGAGTTTGTTTTCTTGGTTGATTTC--AGTGGTAGAATTATTTGTTCCTATTTGG-AAGT 1850
Query 1853 AATTGTTGCAACATTCATGTATAAAAGGCCTTACCAATTTCAGGCTTGAATAAGAATACA 1912
||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||
Sbjct 1851 AATTGTTGCAACATTCATGTA-AAA-GGCCATACCAATTTCTGGCTTGAATAAGAATACA 1908
Query 1913 TAGTTTGCAC 1922
||||||||||
Sbjct 1909 TAGTTTGCAC 1918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72219104520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5