BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65610.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925651 jgi|Araly1|925651|scaffold_201212.1 2911 0.0
> Ahg925651 jgi|Araly1|925651|scaffold_201212.1
Length=1912
Score = 2911 bits (1576), Expect = 0.0
Identities = 1804/1916 (94%), Gaps = 8/1916 (0%)
Strand=Plus/Plus
Query 80 ATCATCCAAGCTCTTTCGAAATGCATCCCGGGAATGTATGGGGTGGGTCGCTAGACGCCG 139
|||||||||||||||| | |||||||||||||||||||||||| ||||| || |||||||
Sbjct 1 ATCATCCAAGCTCTTTAGCAATGCATCCCGGGAATGTATGGGGCGGGTCTCTGGACGCCG 60
Query 140 TAGACAGCGACCGTATTGCGGCAGAGGAGGAAGAACGGCTGAGGAACACGACGGAGTGGG 199
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TAGACAGCGACCGTATCGCGGCAGAGGAGGAAGAACGGCTGAGGAAGACGACGGAGTGGG 120
Query 200 ACAGAGGAGCTATTCACTCACAGAGAAGTGAATTAGACGAAACGCAACAAGGCTGGTTGC 259
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 ACAGAGGAGCTATTCATTCACAGAGAAGTGAATTAGACGAAACACAACAAGGCTGGTTGC 180
Query 260 TTGCACCGCAAGATAATTGGAGAAAGAAGAAGAAGAAATATGTAAACCTAGGTTGTGTTT 319
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCACCGCAAGATAGTTGGAGGAAGAAGAAGAAGAAATATGTAAACCTAGGTTGTGTTT 240
Query 320 CCGTGAGCC-GCACGGTTTTCTTGTGGACCGTTGGATCTATTGCCGTCTTGTTTCTCGTC 378
||||||||| | |||| || | |||||||||||||| |||||||||| ||||||||||||
Sbjct 241 CCGTGAGCCAG-ACGGCTTGCATGTGGACCGTTGGAACTATTGCCGTTTTGTTTCTCGTC 299
Query 379 GTTGCTCTTCCGATCATTATCGTCAAGTCGTTGCCTCGTCATAAGTCTGCACCTCCTCCG 438
|||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||
Sbjct 300 GTTGCTCTTCCGATCATTATTGTTAAGTCGTTGCCTCGTCATAAGTCTACTCCTCCTCCT 359
Query 439 CCTGATAATTACACTCTTGCCCTTCACAAAGCACTTCAATTTTTCGATGCTCAAAAATCT 498
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 360 CCTGATAATTACACTCTTGCCCTTCACAAAGCTCTTCAGTTTTTCGATGCCCAAAAATCG 419
Query 499 GGTAAGCTGCCGAAGAAGAATAAGGTTTCATGGAGAGGTGATTCAGGGAC-GAAGGATGG 557
||||| ||||||||||||||||||||||||||||| || ||||| ||| | | ||||||
Sbjct 420 GGTAAACTGCCGAAGAAGAATAAGGTTTCATGGAGGGGAGATTC-GGGGCTGGGGGATGG 478
Query 558 GCTGCCGGACGTGGTAGGAGGATTGGTCGGGGGATACTACGACGGAGGAAGCAACGTCAA 617
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 479 GAAACCGGACGTGGTTGGAGGATTGGTCGGAGGATACTACGACGGAGGAAGTAACATCAA 538
Query 618 GTTTCATTTTCCGATGGCATTCTCAATGACAATGCTAAGTTGGAGTCTCATTGAGTATAG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTTCATTTTCCGATGGCATTCTCAATGACAATGCTAAGTTGGAGTCTCATTGAGTATAG 598
Query 678 CCACAAATACAAAGCCATCGATGAGTATGATCACATGAGAGATGTTCTCAAATGGGGCAC 737
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCACAAATATAAAGCCATCGATGAGTATGATCACATGAGAGATGTTCTCAAATGGGGCAC 658
Query 738 TGATTATCTTCTTCTCACTTTCAACAATTCTGCTACTCGCCTTGATCATATCTACACTCA 797
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 TGATTATCTTCTTCTCACTTTCAACAATTCTGCTACTCGCCTTGATCATATTTACACTCA 718
Query 798 GGTTGGTGGGGGACTAAGAGACTCAGAATCACCAGATGATATCTACTGTTGGCAAAAACC 857
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTTGGTGGAGGACTAAGAGATTCAGAATCACCAGATGATATCTACTGTTGGCAAAAACC 778
Query 858 AGAAGACATGTCCTACGACCGTCCCGTCCTCTCTTCCACTTCGGCCGCTGACCTTGGCGC 917
|||||||||||||||||||||||| |||||||| ||||||| || || ||||| |||||
Sbjct 779 AGAAGACATGTCCTACGACCGTCCAGTCCTCTCCGCCACTTCCGCGGCCGACCTGGGCGC 838
Query 918 AGAAGTTTCTGCAGCCTTAGCTGCTGCTTCAATCGTATTCACTGACAAACCGGACTACGC 977
||||||| ||||||||||| | || || ||||| || |||||||||||||||||||||||
Sbjct 839 AGAAGTTGCTGCAGCCTTATCCGCAGCCTCAATTGTGTTCACTGACAAACCGGACTACGC 898
Query 978 CAAAAAGCTCAAAAAAGGCGCAGAAACTCTATATCCCTTCTTCAGAAGCAAGTCCAGACG 1037
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 899 CAAAAAACTCAAAAAAGGTGCAGAAACTCTATATCCCTTCTTTAGAAGCAAGTCTAGACG 958
Query 1038 CAAGCGCTACTCGGACGGACAACCAACGGCTCAAGCTTTCTACAATTCAACAAGTATGTT 1097
|||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 959 CAAGCGGTATTCGGATGGACAACCAACGGCTCAAGCTTTCTACAACTCAACCAGTATGTT 1018
Query 1098 CGACGAGTTCATGTGGGCTGGTGCATGGCTTTACTACGCCACTGGAAACAAGACTTACAT 1157
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 CGATGAGTTCATGTGGGCTGGTGCATGGCTTTACTACGCCACTGGAAACAAGACTTATAT 1078
Query 1158 ACAAT-TCGCCACCACACCGAGTGTACCTCAAACTGCTAAAGCTTTTGCTAATCGACCCG 1216
||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1079 ACAATAT-GCCACCACGCCGAGTGTACCTCAAACGGCTAAAGCTTTTGCTAATCGACCAG 1137
Query 1217 AGTTAATGGTACCGAGCTGGAATAACAAATTACCTGGAGCAATGTTGTTGATGACTCGGT 1276
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATTTAATGGTACCAAGCTGGAATAACAAATTACCTGGAGCAATGTTGTTGATGACTCGGT 1197
Query 1277 ATAGATTGTTCTTGAACCCTGGTTTCCCTTACGAAAACATGCTCAATAGGTACCATAACG 1336
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 1198 ATAGATTGTTCTTGAACCCTGGTTTTCCTTACGAGAACATGCTCAATAGATACCATAACG 1257
Query 1337 CTACTGGTATCACCATGTGTGCTTATCTCAAGCAGTACAATGTCTTTAACCGAACTTCAG 1396
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1258 CTACTGGTATCACCATGTGTGCTTATCTCAAGCAGTACAATGTCTTTAACCGGACTTCAG 1317
Query 1397 GAGGGCTTATGCAACTCAACTTGGGGAAACCAAGACCACTTGAATATGTGGCTCATGCTT 1456
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 1318 GAGGGCTTATGCAACTCAACATGGGGAAACCAAGACCACTAGAATATGTTGCTCATGCTT 1377
Query 1457 CCTTCTTAGCTTCCTTGTTCGCGGATTATCTTAATTCTACTGGAGTTCCTGGATGGTACT 1516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1378 CCTTCTTAGCTTCCTTGTTCGCGGATTATCTTAATTCTACTGGAGTTCCTGGATGGTATT 1437
Query 1517 GTGGACCTACATTTGTAGAGAACCATGTTCTCAAGGATTTTGCTCAGTCTCAGATTGATT 1576
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 GTGGACCTACATTTGTGGAGAACCATGTTCTCAAGGATTTTGCTCAGTCTCAGATTGACT 1497
Query 1577 ACATTCTTGGAGACAACCCCTTAAAAATGAGCTATGTGGTTGGATTCGGCAAGAAGTTTC 1636
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 1498 ACATTCTTGGAGACAACCCTTTAAAAATGAGCTATGTGGTTGGGTTTGGCAAGAAGTATC 1557
Query 1637 CAAGACGTGTTCATCACCGAGGCGCCACGATCCCAAACGACAAAAAGAGGAGAAGCTGTA 1696
| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1558 CTAGACGTGTTCACCACCGAGGAGCCACGATCCCAAACGACAAGAAGAGAAGAAGCTGTA 1617
Query 1697 GAGAAGGATTGAAGTATAGAGACACAAAGAATCCAAATCCAAACAACATCACAGGAGCTA 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GAGAAGGATTGAAGTATAGAGACACAAAGAATCCAAATCCAAACAACATCACAGGAGCTA 1677
Query 1757 TGGTTGGTGGACCAAACAAATTCGATGAGTTCCATGACTTGCGAAACAATTATAACGCAA 1816
|||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1678 TGGTCGGTGGACCAAATAGATTCGATGAGTTCCATGACTTGCGAAACAATTATAACGCGA 1737
Query 1817 GCGAGCCTACTCTCTCTGGTAACGCAGGCCTCGTAGCTGCTCTCGTTTC-CTTAACCAGC 1875
||||||||||||||||||||||||||||||| || ||||||||| |||| || |||||||
Sbjct 1738 GCGAGCCTACTCTCTCTGGTAACGCAGGCCTTGTGGCTGCTCTCATTTCACT-AACCAGC 1796
Query 1876 AGTGGTGGCCAACAAATTGATAAGAACACGATGTTCAATAGTGTTCCTCCTCTCTACTCT 1935
|||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1797 AGTGGTCGCCAACTAATCGATAAGAACACGATGTTCAATAGTGTTCCTCCTCTCTACCCT 1856
Query 1936 CCGACTCCACCACCTCCTAAAGCCTGGAAGCCTTGAAAAATATTGCATCTACGTCA 1991
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1857 CCGACTCCACCACCTCCTAAAGCCTGGAAGCCTTGAAATATATTTCATCTACGTCA 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5