BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65620.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475666 jgi|Araly1|475666|fgenesh2_kg.2__796__AT1G65620.2 1495 0.0
> Ahg475666 jgi|Araly1|475666|fgenesh2_kg.2__796__AT1G65620.2
Length=1338
Score = 1495 bits (809), Expect = 0.0
Identities = 932/986 (95%), Gaps = 30/986 (3%)
Strand=Plus/Plus
Query 390 GCTTTTTGTATGCAACCCCAAATAGCAGCTTAAAGAAAGCAGAGAGGATCTTCTTTTATT 449
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GCTTTTTTTATGCAACCCCAAATAGCAGCTTAAAGAAAGCAGAGAGGATCTTCTTTTATT 434
Query 450 TCCCCTCTGAGCAACAGAAGCCATTATTCAAAGAAAGGCTTCTTTAATTTACTCGCAGGG 509
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 TCCCCTCTGAGAAACAGAAGCCATTATTCAAAGAAAGGCTTCTTTAATTTACTCACAGGG 494
Query 510 AGAGGGaaaagagaaaaaattgaaaaaCTCCATTTTCAAGTCATTAAAATGGCATCTTCT 569
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AGAGGGAAAAAAGAAAAAATTGAAAAACTCCATTTTCAAGTCATTAAAATGGCATCTTCT 554
Query 570 TCAACAAACTCACCATGCGCCGCTTGCAAATTCCTCCGGCGAAAATGTCAACCGGAATGT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TCAACAAACTCACCATGCGCCGCTTGCAAATTCCTCCGGCGAAAATGTCAACCGGAATGT 614
Query 630 GTATTCGCGCCCTATTTCCCACCGGACCAGCCACAAAAATTCGCAAACGTTCACAAAGTG 689
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTATTTGCGCCCTATTTCCCACCGGACCAGCCACAAAAATTCGCAAACGTTCACAAAGTG 674
Query 690 TTTGGAGCAAGTAACGTGACAAAGCTCCTCAACGAGCTTCACCCTTCACAACGTGAAGAC 749
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 675 TTTGGAGCAAGTAACGTGACAAAGCTCCTTAACGAGCTTCATCCTTCACAACGTGAAGAT 734
Query 750 GCAGTGAACTCTTTGGCCTATGAAGCCGACATGCGCCTCCGTGACCCTGTCTACGGCTGC 809
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 GCAGTGAACTCTTTGGCCTATGAAGCCGACATGCGTCTCCGTGACCCTGTCTACGGCTGC 794
Query 810 GTCGGCGTCATCTCTCTCCTCCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGT 869
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 795 GTCGGCGTTATCTCTCTCCTTCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGT 854
Query 870 GCTAAATCTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GCTAAATCTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGT 914
Query 930 CTTGGCATCAACTTACTCGCCGGAGCAGCAGATGGAACAGCCACCGCC---GTGAGAGAC 986
|| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 915 CTAGGCATCAACTTACTCGCCGGAGCAGCCGATGGAACAGCCACCGCCACCGTGAGAGAC 974
Query 987 CAC---TATCACCACCACCAGTTTTTTCCTAGAGAACAAATGTTTGGTGGCTTGGATGTT 1043
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CACCACTATCACCACCATCAGTTTTTTCCTAGAGAACAAATGTTTGGTGGCTTGGATGTT 1034
Query 1044 CCGGCCGGTAACAACTACGACGGTGGGATTCTTGCCATTGGACAGATCACTCAGTTTCAG 1103
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1035 CCGGCCGGTAGCAACTACGACGGTGGGATTCTGGCCATTGGACAGATCACTCAGTTTCAG 1094
Query 1104 CAGCCGAGAGCCGCCGCTGGAGATGATGGTCGCCGTACTGTTGATCCGTCTTGAGATTTT 1163
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1095 CAGCCGAGAGCCGCCGCTGGTGATGACGGCCGCCGTACTGTTGATCCGTCTTGAGATTTT 1154
Query 1164 AGGGTTTTGGTGGTGTTCATC-TTCGTCGATCGC-TTGGTGATGAGAAAACTATAATTTT 1221
|||||||||||||| | | || || |||||| || |||||||||| |||| ||| ||
Sbjct 1155 AGGGTTTTGGTGGT-TCC-TCGTT-GTCGAT-GCCTTGGTGATGA-AAAA-TAT--TT-- 1204
Query 1222 AAGAAAATATTTGATGTGGAAAACCAAAATATTTTAAACGTATGGTACGTCTCTCTTAAT 1281
|| | | || | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1205 --GA---T----G-TG-G-AAAACCAAAATATTTTAAACGTATGGTACGTCTCTCTTGAT 1252
Query 1282 GACATTAATTTCGGTTTttattattattattacttagatatattatGATAGTCACTTTTG 1341
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1253 GACATTAATTTCAGTTTTTATTATTATTATCACTTAGATATATGATGATAGTCACTTTTG 1312
Query 1342 TATTTCTTTCAAATTTTATGGACTTG 1367
||||||||||||||||||||||||||
Sbjct 1313 TATTTCTTTCAAATTTTATGGACTTG 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5