BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65630.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315601 jgi|Araly1|315601|fgenesh1_pm.C_scaffold_2000634 1696 0.0
Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077 848 0.0
Ahg493687 jgi|Araly1|493687|fgenesh2_kg.7__3120__AT5G36950.1 553 2e-156
Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1 145 1e-33
> Ahg315601 jgi|Araly1|315601|fgenesh1_pm.C_scaffold_2000634
Length=1638
Score = 1696 bits (918), Expect = 0.0
Identities = 1246/1405 (89%), Gaps = 20/1405 (1%)
Strand=Plus/Plus
Query 262 TCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTATTCACCGTCTCTAGCAAGCCT 321
||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||| |
Sbjct 238 TCTGCTATTGATTTGGCTCTTAACTCAGTGGTGAAGGTGTTCACTGTCTCTAACAAGCAT 297
Query 322 AG-ACTTTTTCAACCTTGGCAGATTACTATGC-AGAGTGAAAGCACCGGCTCTGGTTTTG 379
|| || ||||||||| |||||| || | ||| ||| |||| |||||||||| || ||||
Sbjct 298 AGAAC-TTTTCAACCATGGCAGTTTTGTTTGCAAGA-TGAAGGCACCGGCTCAGGATTTG 355
Query 380 TAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCGTTA 439
||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 356 TAATCGCGGGAAGGAAGATTCTTACGAATGCTCATGTAGTGGCTAATCACACATCTGTTA 415
Query 440 AAGTCCGAAAGCATGGTTCAACC-ACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTCAT 498
||||| |||| |||||||| ||| || ||||||||||||||||||| ||| | || |||
Sbjct 416 AAGTCAGAAAACATGGTTC-ACCTACGAAGTACAAAGCAAAAGTTCGAGCAATCGGGCAT 474
Query 499 GAATGTGATTTGGCCATCTTGGAGATTGATAATGATAAGTTTTGGGAGGGAATGAACCCC 558
||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||||
Sbjct 475 GAATGTGATTTGGCCATCTTGGATATCGATAGCGATAACTTTTGGGAGGGAATGAACCCC 534
Query 559 TTGGAACTCGGGGATATACCCTCTATGCAGGACACCGTGTATGTTGTTGGCTATCCAAAA 618
|||||||| ||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 535 TTGGAACTTGGGGATATACCCTCTCTGCAAGAAAAAGTGTATGTTGTTGGCTATCCAAAA 594
Query 619 GGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCATAAAATAC 678
||||||||||||||||||||| |||||||||||||||||||||||| || | || |||||
Sbjct 595 GGTGGTGATACCATATCCGTTACGAAAGGTGTTGTGTCGAGAGTTGAACTCTTAGAATAC 654
Query 679 AGTCACAGCGGCACTGAACTACTGGCAATACAAATAGATGCAGCTATCAAT-AATGGAAA 737
|||||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 655 AGTCACAGCGCCACTGAACTACTGGCAATACAAATAGATGCAGCTATAAATGAA-GGAAA 713
Query 738 TAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAAGTCTATG 797
|||||| ||||||||||||||||| |||||||| |||||||||||||| |||| |||| |
Sbjct 714 TAGTGGCGGTCCGGTAATCATGGGCAACAAAGTGGCTGGTGTAGCATTCGAAACTCTAGG 773
Query 798 TTATTCCGATAGTATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTTTTTAAATGC 857
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 774 TTGTTCCGATAGTATAGGCTATATAATTCCAACTCCGGTCATTAGCCATTTTTTAGATGC 833
Query 858 TATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATATCAGAAAAT 917
| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||| ||
Sbjct 834 TGTTGAAGAAAGTGGTCAACATGTTAGTTTCTGCTCAATAAATCTATCATATCAGAATAT 893
Query 918 GGACAATGATCAACTCCGTAAGGACTTCAAAATGAGCGATAAAATGACAGGCATTCTTAT 977
||| ||||||||||||||||| |||||||||||||||| | |||||||| ||| ||||
Sbjct 894 GGAGAATGATCAACTCCGTAACCACTTCAAAATGAGCGACGACATGACAGGGATTGTTAT 953
Query 978 AAACAAAATAAACCCGCTTTCGGATGTTC--ACAAAGTTCTGAAAAAAGATGACATCATT 1035
||| |||||||||||||||||||| ||| |||||||||| |||||| |||| |||||
Sbjct 954 AAAAAAAATAAACCCGCTTTCGGA--TTCATACAAAGTTCTAAAAAAAAATGATGTCATT 1011
Query 1036 CTCGCGATTGATGGTGTTCCTATAGGAAACGATAGTTCAGTCCATTTTCGTAAGAAGGAA 1095
|||||||||||||||||||||||||||||||||||| |||||| |||||| || ||||||
Sbjct 1012 CTCGCGATTGATGGTGTTCCTATAGGAAACGATAGTACAGTCCCTTTTCGAAACAAGGAA 1071
Query 1096 CGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAGACAGCATTACTTAAA 1155
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||
Sbjct 1072 CGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAAAGAGCGTTACTCAAA 1131
Query 1156 GTCTTAAGAGAGGGAAAAGAGTATGAGTTTAATAGTAGTCTAAAATCCGTACCACCACTA 1215
||||||||||||||||||||||||||||||| || |||||||||| |||| |||| |||
Sbjct 1132 GTCTTAAGAGAGGGAAAAGAGTATGAGTTTAGTATTAGTCTAAAACCCGTGCCACGGCTA 1191
Query 1216 GTTCCAAAGCGTCAATATGACAAGTCTGCAAGTTATTATATATTCGGGGGTCTTGttttt 1275
||||||| || ||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1192 GTTCCAATGCATCAATTTGACAAGCCTCCAAGTTATTATATATTCGGGGGTCTTGTATTT 1251
Query 1276 ttACCTCTAACTAAACCATACATTGATAG-TTCTTGTGTTTCCGAATCTGCTCTAGGA-A 1333
|||||||||||||||||||||||||| | | ||| | ||||| ||| ||||||| || |
Sbjct 1252 GTACCTCTAACTAAACCATACATTGAT-GATGCTTCTATTTCCAAATATGCTCTA-GAGA 1309
Query 1334 AGATGCCCAAAAAAGCCGGTGAACAAGTTGTAATAATTTCTCAGATTCTAGAGGATGACA 1393
|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 1310 AGATGCCCAAAAAAGCCGGTGAACAAATCGTAATAATTTCTCAGATTCTGGAGGATGACA 1369
Query 1394 TCAATACAGGATACAGTATTTTCGAAGATTTCCAGGTGAAGAAAGTGAATGGAGTGCAAG 1453
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1370 TCAATACAGGATACAACATTTTTGAAGATTTGCAGGTGAAGAAAGTGAATGGAGTGCAAG 1429
Query 1454 TGCATAATCTCAAACATCTATATAAGCTTGTAGAGGAATGCTGCACAGAAAC-TGTGAGG 1512
||||||||||||||||||||||||| || ||||||||||||||||||||| | || |
Sbjct 1430 TGCATAATCTCAAACATCTATATAATCTCATAGAGGAATGCTGCACAGAAAAAT-TGTTG 1488
Query 1513 ATGGACTTGGAGAAAGATAAGGTTATTACCCTCGATTATAAGTCTGCGAAGAAAG-TCAC 1571
|||||||||||| ||||||||||| | || |||||||||| |||||||| |||| | ||
Sbjct 1489 ATGGACTTGGAGCAAGATAAGGTTCTCGCCATCGATTATAAATCTGCGAAAAAAGCT-AC 1547
Query 1572 TTCTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCGTGTCTGAGGATCTTCAGCCTAA 1631
||||||||||||||||| || ||||||| |||||| |||| |||| ||| ||||||
Sbjct 1548 TTCTAAGATCTTGAAAAAACTTGAAATACCCTCGGCCATGTCCAAGGACCTTAAGCCTAG 1607
Query 1632 ACAACAGAATAAGCGCAGCAAAGTT 1656
||| ||||| |||| ||| ||||
Sbjct 1608 ACAGTTGAATAGGCGCCGCAGAGTT 1632
> Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077
Length=1662
Score = 848 bits (459), Expect = 0.0
Identities = 721/845 (85%), Gaps = 28/845 (3%)
Strand=Plus/Plus
Query 198 GAAGAATAAGTTGCCGCCAGGGAAAGAAGTATCTAGTAAGGATGCTA-AAGAAAAGATTA 256
|||||||||||| | ||||| |||||||||||||||| | ||||| | |||||| || |
Sbjct 228 GAAGAATAAGTTTCTGCCAGTGAAAGAAGTATCTAGTGATGATGC-AGCAGAAAATATGA 286
Query 257 CTACTTCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTATTCACCGTCTCTAGCA 316
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 287 CTACTTCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTGTTCATCGTCTCTAGCA 346
Query 317 AGCCTAGACTTTTTCAACCTTGGCAGATTACTATGCAGAGTGAAAGCACCGGCTCTGGTT 376
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 347 AGCATAGAATTTTTCAACCTTGGCAGATTAGTATGCAGAGTGAATGCACCGGCTCTGGTT 406
Query 377 TTGTAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCG 436
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 407 TTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCATGTAGTAGCTGATCAAACATCTG 466
Query 437 TTAAAGTCCGAAAGCATGGTTCAACCACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTC 496
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 467 TTAAAGTCCGAAAGCATGGTTCACCCAAAAAGTACAAAGCAAAAGTTCAAGTGGTTGGTC 526
Query 497 ATGAATGTGATTTGGCCATCTTGGAGATTGATAATGATA-AGTTTTGGGAGGGAATGAAC 555
| |||||||||||||||||||||||||| ||||| || | ||||||||||||| | | |
Sbjct 527 ACGAATGTGATTTGGCCATCTTGGAGATCGATAACGA-AGAGTTTTGGGAGGGTCTTA-C 584
Query 556 CCCTT-GGAACTCGGG-GATATACCCTCT-ATGCAGGACACCGTGTATGTTGTTGGCTAT 612
|| || ||| || ||| || |||||||| | ||| | ||| || |||||||||
Sbjct 585 CCATTTGGAGCT-GGGAGACATACCCTCCCAAAT-GGATTCTGTGGCGGTCGTTGGCTAT 642
Query 613 CCAAAAGGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCATA 672
||| |||||||||||| ||||||||| || ||||||||||||||||||||| || | |
Sbjct 643 CCAGAAGGTGGTGATAGTATATCCGTTACGCAAGGTGTTGTGTCGAGAGTTGTACTGAGA 702
Query 673 AAATACAGTCACAGCGGCACTGAACTACTGGCAATACAAATAGATGCAGCTATCAA-TAA 731
| ||||||||||||| ||| || || || ||||||||||||||||||||| || |
Sbjct 703 AGATACAGTCACAGCTCCACCGAGTTATTGAAAATACAAATAGATGCAGCTATAAACTC- 761
Query 732 TGGAAATAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAAG 791
|||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 762 TGGAAATAGTGGCGGTCCGGTAATCATGGGAAACAAAGTGGTTGGTGTAGCATTTGAAAG 821
Query 792 TC-TATGTTATTCCGATAGT-ATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTTT 849
| | || | ||| || | | ||||||||||||||||||||||| |||||||| ||||||
Sbjct 822 CCGT-TGCTGTTCTGA-ACTTATAGGCTACATAATTCCAACTCCAGTCATTAGACATTTT 879
Query 850 TTAAATGCTATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATAT 909
||||||| | |||||||||||||| || || |||||||| ||||||| ||| || |||||
Sbjct 880 TTAAATGGTGTTGAAGAAAGTGGTCAACATTTTAGTTTCTGCTCAATGAATTTATCATAT 939
Query 910 CAGAAA-ATGGA-CAATGATCA-ACTCCGTAAGGACTTCAAA-ATGAGCGATAAAATGAC 965
| || ||||| || || || || |||||| | ||| ||| ||| || | |||||||
Sbjct 940 CT-AACTATGGAGCA-TGCCCACAC-CCGTAACGCCTT-AAAGATGGGCAAGGAAATGAC 995
Query 966 AGGCATT-CTTATAAACAAA-ATAAACCCGCTTTCGGATGTTCACAAAGTTCTGAAAAAA 1023
||| ||| || |||| || |||||||| |||||||||| |||||||||||||||||||
Sbjct 996 AGGGATTGCTG-TAAA-AAGTATAAACCCACTTTCGGATGCTCACAAAGTTCTGAAAAAA 1053
Query 1024 GATGA 1028
|||||
Sbjct 1054 GATGA 1058
Score = 553 bits (299), Expect = 2e-156
Identities = 502/599 (84%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 1091 AGGAACGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAGACAGCATTAC 1150
|||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1073 AGGACCGAGTAAGTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGATACAGCGTCAT 1132
Query 1151 TTAAAGTCTTAAGAGA-GGGAAAAGAGTATGAGTTTAATAGTA-GTCTAAAATCCGTACC 1208
|||||||||||||||| |||||| || | ||||| |||| || | |||||| |||| |
Sbjct 1133 TTAAAGTCTTAAGAGAAGGGAAA-GAACACGAGTTCAATA-TAAGCCTAAAACCCGTGCA 1190
Query 1209 ACCACTAGTTCCAAAGCGTCAATATGACAAGTCTGCAAGTTATTATATAT-TCGGGGGTC 1267
||| ||||||||| | ||||||||||| | || ||||||||||||||| | |||||||
Sbjct 1191 ACCTCTAGTTCCAGTGAATCAATATGACATGCCTCCAAGTTATTATATATAT-GGGGGTC 1249
Query 1268 TTGtttttttACCTCTAACTAAACCATACATTGATAGTTCTTGTGTTTCCGAATCT-GCT 1326
|||||||| ||||||||||| |||||||||||||| |||||| | ||| ||||| | | |
Sbjct 1250 TTGTTTTTGTACCTCTAACTCAACCATACATTGATCGTTCTTATATTTGCGAATGTTG-T 1308
Query 1327 CT-AGGAAAGATGCCCAAAAAAGCCGGTGAACAAGTTGTAATAATTTCTCAGATTCTAGA 1385
| | ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1309 GTTAA-AAAGATGCCCACAAAAGCCGGTGAACAAATTGTAATAATTTCTCAGATTTTAGA 1367
Query 1386 GGATGACATCAATACAGGA-TACAGTATTTTCGAAGATTTCCAGGTGAAGAAAGTGAATG 1444
|||||| |||| | |||| | ||||||||| |||||||| |||||||||||| ||||||
Sbjct 1368 GGATGATATCACTTCAGGTCT-CAGTATTTTTGAAGATTTACAGGTGAAGAAATTGAATG 1426
Query 1445 GAGTGCAAGTGCATAATCTCAAACATCTATATAAGCTTGTAGAGGAATGCTGCA-C-AGA 1502
||||| ||||| ||||| | || ||||||| | ||||| |||||||||| | || | ||
Sbjct 1427 GAGTGGAAGTGGATAATTTGAAGCATCTATGTCAGCTTATAGAGGAATGTTCCAACGAGT 1486
Query 1503 AACTGTGAGGATGGACTTGGA-GAAAGATAAGGTTATTACCCTCGATTATAAGTCTGCGA 1561
| | ||||| | |||||||| || | |||| || || ||| || |||| |||||||
Sbjct 1487 AT-T-TGAGGTTTGACTTGGAAGACA-ATAATTTTTTTTTCCTAGAACATAAATCTGCGA 1543
Query 1562 AGAAAGTCACTTCTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCGTGTCTGAGGATC 1621
| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1544 AAAAAGCCACTTGTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCATGTCTGAGGACC 1603
Query 1622 TTCAGCCTAAACAACAGAATAAGCGCAGCAAAGTTCCTCCAAAGAGTAAAGAACATTGA 1680
||||||||||||||| |||||| ||| |||||||||||| |||| ||| ||||||||
Sbjct 1604 TTCAGCCTAAACAACGGAATAACCGCCGCAAAGTTCCTCGGCAGAGCAAAAAACATTGA 1662
> Ahg493687 jgi|Araly1|493687|fgenesh2_kg.7__3120__AT5G36950.1
Length=1911
Score = 553 bits (299), Expect = 2e-156
Identities = 809/1052 (77%), Gaps = 48/1052 (5%)
Strand=Plus/Plus
Query 269 TTGATTTGGCCCTCA-ACTCGGTGGTGAAGGTATTCACCGTCTCTAGCAAG-CCTAGACT 326
||||||||| | | | |||| ||||||||| | ||||| || |||| |||| ||||| |
Sbjct 332 TTGATTTGG-CGTTAGACTCAGTGGTGAAGATCTTCACTGTTTCTA-CAAGTCCTAG--T 387
Query 327 T--TTTCAACCTTGGCAG-ATTACTATGCAGAGTGAAAGCACCGGCTCTGGTTTTGTAAT 383
| |||| ||||||||| || | | | ||||| ||| || |||||||| ||||| ||
Sbjct 388 TACTTTCTTCCTTGGCAGAATAAGTCT-CAGAGAGAATCCATGGGCTCTGGATTTGTGAT 446
Query 384 CTCGGGAAAGAAA-ATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCGT-TAAA 441
||||| |||||| ||| | |||||||| ||||| |||||| |||| | | || | |
Sbjct 447 TTCGGG-AAGAAAGATTATAACGAATGCGCATGTGGTGGCTGATCACTCCTTTGTGT-TA 504
Query 442 GTCCGAAAGCATGGTTCAACCACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTCATGAA 501
|| |||||||||| || | | ||| ||| |||| |||||||||||||||||||||||
Sbjct 505 GTTAGAAAGCATGGATCGTCGATAAAACACAGAGCAGAAGTTCAAGCGGTTGGTCATGAA 564
Query 502 TGTGATTTGGCCATCTTGG-AGATTGATAATGATAA-GTTTTGGGAGGGAATGAACCCCT 559
||||||||||| ||||||| || |||||| ||| | ||||||||| || ||||| | |
Sbjct 565 TGTGATTTGGCAATCTTGGTAG-TTGATAGTGA-AGTGTTTTGGGAAGGTATGAATTCGT 622
Query 560 TGGAACTCGGGGATATACCCTCTATGCAGGACACC-GTGTATGTTGTTGGCTATCCAAAA 618
|||| || || |||||||| | | | ||||| | | ||| ||| ||||||||||| ||
Sbjct 623 TGGAGCTTGGAGATATACCGTTTCTTCAGGA-AGCTGTGGCTGTAGTTGGCTATCCTCAA 681
Query 619 GGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCATAAAATAC 678
|||||||| | ||| || ||| | |||||||||||||| |||||| ||| | | ||||
Sbjct 682 GGTGGTGACAACATCTCTGTTACAAAAGGTGTTGTGTCTCGAGTTGAACCAACACAATAT 741
Query 679 AGT-CACAGCGGC-ACTGAACTACTGGCAATACAAATAGATGCAGCTATCAATAATGGAA 736
|| ||| ||| | || ||||| |||| |||||||||||||| ||||| || |||||
Sbjct 742 -GTTCACGGCG-CTACCCAACTAATGGCTATACAAATAGATGCTGCTATTAACCCTGGAA 799
Query 737 ATAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAAGTCTAT 796
|||||||||| || | |||||||||||||||||| ||||||||||||||| ||| ||| |
Sbjct 800 ATAGTGGTGGCCCAGCAATCATGGGAAACAAAGTAGCTGGTGTAGCATTTCAAAATCT-T 858
Query 797 GTTAT-TCC-GATAGTATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTTTTTAAA 854
| | | | || | || ||||| ||||||||||| || || |||| |||||| ||||
Sbjct 859 -TCAGGTGCTGAGAACATTGGCTATATAATTCCAACACCAGTGATTAAGCATTTCATAAA 917
Query 855 TGCTATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATATCAGAA 914
|| | |||||||| ||||| || | || ||||| | ||||| | || ||| ||||
Sbjct 918 TGGTGTTGAAGAATGTGGTAAATACATTGGTTTCTGTTCAATGGGTGTATCATGTCAGCC 977
Query 915 AATGGACAATGATCAACTCCGTAA-GGACTTCAAAATGAGCGATAAAATGACAGGCATTC 973
||||| |||| | |||| |||| || |||| | |||| | |||||||||| |||
Sbjct 978 TATGGAGAATGGTGAACTTCGTAGCGGTTTTCAGA-TGAGTTCTGAAATGACAGGGGTTC 1036
Query 974 TTATAAACAAAATAAACCCGCTT-TCGGATGTTCACAAAGTTCTGAAAAAAGATGACATC 1032
|| | | |||||||||||| || || |||| ||||||| || |||| |||||||| |
Sbjct 1037 TTGTTAGCAAAATAAACCCT-TTATCAGATGCTCACAAACTTTTGAAGAAAGATGATGTT 1095
Query 1033 ATTCTCGCGATT-GATGGTGTTCCTATAGGAAACGATAGTTCAGT-CCATTTTCGTAAGA 1090
||||| || ||| |||||||||||||||| ||| ||| | |||| || |||||| || |
Sbjct 1096 ATTCTTGC-ATTTGATGGTGTTCCTATAGCAAATGATGGAACAGTTCC-TTTTCGGAACA 1153
Query 1091 AGGAACGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATG-TGAGACAGCATTA 1149
||| ||||| |||||| | |||||||||||||||||||||||| | ||| ||||| ||
Sbjct 1154 GGGAGCGAATCACTTTCGATCATTTGGTTTCTATGAAGAAACCA-GATGAAACAGCCTTG 1212
Query 1150 CTTAAAGTCTTAAGAGAGGGAAAAGAGTATGAGTTTAATAGT-AGTCTAAAATC-CGTAC 1207
|||||||||| || |||||||| || ||||||| | || | | |||| | | | | |
Sbjct 1213 GTTAAAGTCTTGAGGGAGGGAAAGGAACATGAGTTCAGTA-TCACACTAAGACCTC-TGC 1270
Query 1208 CACCACTAGTTCCAAAGCGTCAATATGA-CAAGTCTGCA-AGTTATTATATATTCGGGGG 1265
|||||| |||||| || ||||| ||| || | || | |||||||||||||| | |||
Sbjct 1271 AACCACTGGTTCCAGTGCATCAATTTGATCA-G-CTTCCCAGTTATTATATATTTGCGGG 1328
Query 1266 TCTT-GtttttttACCTCTAACTAAACCATAC 1296
||| || ||| ||||||| ||| | ||||||
Sbjct 1329 -CTTCGTATTTGTACCTCTCACTCAGCCATAC 1359
> Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1
Length=1485
Score = 145 bits (78), Expect = 1e-33
Identities = 179/225 (80%), Gaps = 17/225 (8%)
Strand=Plus/Plus
Query 367 GGCTCTGGTTTTGTAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGT--AG-TGGC- 422
||| |||| |||| |||| |||||||||||||||||||||| |||||||| | ||||
Sbjct 415 GGCACTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 474
Query 423 -T--A--ATCAAACATCCGTTAAAGTCCGAAAG-CATGG-T-TCAACCA-CAAAGTACAA 473
| | |||| |||| ||| | || | |||| ||||| | |||| | |||| |||||
Sbjct 475 ATGAATGATCACACATTCGTGGATGT-CAAAAGACATGGCTCTCAA--ATCAAA-TACAA 530
Query 474 AGCAAAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCCATCTTGGAGATTGATAATGA 533
||||||||||||| | || ||||||||||||||||||||||||||||| |||| |||
Sbjct 531 AGCAAAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGA 590
Query 534 TAAGTTTTGGGAGGGAATGAACCCCTTGGAACTCGGGGATATACC 578
|||||||| |||| ||||| |||||||| || || || |||||
Sbjct 591 CGAGTTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5