BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65640.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907997 jgi|Araly1|907997|Al_scaffold_0002_1078 2314 0.0
Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1 339 5e-92
> Ahg907997 jgi|Araly1|907997|Al_scaffold_0002_1078
Length=1587
Score = 2314 bits (1253), Expect = 0.0
Identities = 1454/1551 (94%), Gaps = 14/1551 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTTCCGATTTCTTCAAACACTGGCTCGGTTCTGCCGCTTCTTGCTCATTTCGGTT 60
||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGTTGTTCCGGTTTCTTCAAACATTGGCTCGGTTCTGTAGCTTCTTGCTCATTTCGGTT 60
Query 61 CTTGGG-TTCCGTTTTTCTCCTTTGCTTCTTCTTGGTTACGTAAAACTGCAAGACGAAAA 119
|||| | |||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 61 -ATGGGATCCCGTTTTTCTCCTTTGTTTCTTCTTGGTTACGTTAAATTGCAAGACGAAAA 119
Query 120 TAAGCACAACAGCGAGTCAGCACTTGCATCAGGGACTGACGCAAAACAACCAGAAGCGGC 179
| | ||||||||||||||| |||||||||||||||||||| |||||||||| || |||||
Sbjct 120 TCATCACAACAGCGAGTCAACACTTGCATCAGGGACTGACACAAAACAACCGGATGCGGC 179
Query 180 AGAAAACGTGACATCTTCTTCCATTGATTTTGCGGTAAATTCAGTGGTGAAGGTCTTCAC 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAAACGTGACATCTTCTTCTATTGATTTTGCGGTAAATTCAGTGGTGAAGGTCTTCAC 239
Query 240 CGTCTATAGCATGCCTAGCGTTTTGCAACCTTGGCGGAATTGGCCGCAGCAAGAATCCGG 299
|||| |||| |||||||| ||||||||||||||| ||||||| ||||||||||||| |
Sbjct 240 TGTCTCTAGCGTGCCTAGCATTTTGCAACCTTGGCAAAATTGGCAGCAGCAAGAATCCAG 299
Query 300 CGGCTCTGGATTTGTAATCTCGGGAAAAAAGATTCTTACGAACGCTCATGTAGTTGCTGA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CGGCTCTGGATTTGTAATCTCGGGAAAGAAGATTCTTACGAACGCTCATGTAGTTGCTGA 359
Query 360 TCACATATTTTTGCAAGTTAGAAAACATGGCTCACCCACAAAATACAAAGCACAAGTTCG 419
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 360 TCACATATTTTTGCAAGTTAGAAAACATGGCTCACCTACAAATTACAAAGCAGAAGTTCG 419
Query 420 AGCGATTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGAAGAGTTTTGGGA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGGTTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGAAGAGTTTTGGGA 479
Query 480 GGATATGATACCTTTGGAACTCGGAGAGATACCATCTCTGGATGAATCTGTGGCCGTATT 539
|||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 480 GGATCTGATCCCTTTGGAACTCGGAGAGATACCCTCTCTGGATGAATCTGTTGCCGT-TT 538
Query 540 T-GGCTATCCTAC-TGGTGGTGATAGCGTTTCTATTACTAAAGGTTATGTTTCGAGAGTC 597
| ||||| ||| | ||||||||| ||| |||| |||||||||||||||||||| |||||
Sbjct 539 TAGGCTACCCT-CATGGTGGTGACAGCCTTTCCATTACTAAAGGTTATGTTTCTAGAGTT 597
Query 598 GAATATACA-AGATATGCTCACGGAGGCACTACACTACTCGCTATACAAACAGATGCGGC 656
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAATATACACA-ATATGCTCACGGAGGCACTACACTACTCGCTATACAAACAGATGCGGC 656
Query 657 TATAAACCCTGGAAATAGTGGTGGTCCAGCAATCATAGGAAATAAAATGGCAGGTGTAGC 716
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 TATAAACTCTGGAAATAGTGGTGGTCCAGCAATCATAGGAAATAAAACGGCAGGTGTAGC 716
Query 717 TTTTCAAAAA-GATCCATCTGCAGATAATATAGGATACATAATCCCGACTCCAGTAATAA 775
|||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTTCAAAAATG-TACATCTTCAGATAATATAGGATACATAATCCCGACTCCAGTAATAA 775
Query 776 AACATTTTTTAACTGCTGTTGAAGAAAATGGACAATATGGTGGTTTCTGCACGTTAGACA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CACATTTTTTAACTGCTGTTGAAGAAAATGGACAATATGGTGGTTTCTGCACGCTAGACC 835
Query 836 TTTCCTATCAACTTATGGAGAATTCTCAACTCCGTAATCACTTTAAGATGGGTCCTGAAA 895
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 TTTCTTATCAACTTATGGAGAATTCTCAACTCCGTAATCATTTTAAGATGGGTCCTGAAA 895
Query 896 TGACAGGGATTCTTATAAACGAAATAAACCCTCTGTCGGATGCTTACAAAAGGTTAAGAA 955
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 896 TGACAGGGATTCTTATAAACGAAATAAACCCGCTGTCCGATGCTTACAAAAGGTTAAGAA 955
Query 956 AAGATGACATCATTCTCGCAATTGATGATGTTCTTATAGGAAATGATGCTAAAGTTACTT 1015
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 956 AAGATGACATCATTCTCGCAATTGATGATGTTCTTATAGGAAATGATGCGAAAGTTGCTT 1015
Query 1016 TTCGGAATAAGGAACGAATCAATTTCAATCATTTTGTTTCGATGAAGAAATTAGATGAAA 1075
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 TTCGGAACAAGGAACGAATCAATTTCAATCATTTTGTTTCGATGAAGAAATTAAATGAAA 1075
Query 1076 CAGTTTTACTTCAAGTTTTGAGAGATGGGAAAGAGCATGAGTTCCACATTATGGT-AAAA 1134
|||| |||||| ||||||||||||| |||||||||||||| || ||||| | | | ||||
Sbjct 1076 CAGTCTTACTTAAAGTTTTGAGAGAGGGGAAAGAGCATGATTTTCACATCA-GTTTAAAA 1134
Query 1135 CCCGTGCCACCCCTTGTTCCAGGGCATCAGTATGATAAGCTTCCAAGTTATTACATCTTC 1194
||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1135 CCCGTGCCACCGCTGGTTCCAGTGCATCAGTATGATAAGCTTCCAAGTTATTACATATTC 1194
Query 1195 GCAGGCTTTGTTTTTGTACCTCTTACACAGCCATACATTGACAGTACTTTGATTTGCAAT 1254
||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 1195 GCAGGCTTTGTATTTGTACCACTCACACAGCCATACATTGACAGTACTCTGATTTGCAAT 1254
Query 1255 TGTGCAATTAAATATATGCCTGAAAAGGCTGGTGAACAGCTTGTCATAATTTCTTAGGTG 1314
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 TGTGCAAATAAAAATATGCCTGAAAAGGCTGGTGAACAGCTTGTCATAATTTCGCAGGTG 1314
Query 1315 TTAGCTGACGACATCAATGCAGGATACACTGATTTCAA-GAATTTGAAGGTAATAAAAGT 1373
|||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1315 TTAGCTGATGACATCAATGCAGGATACACTGATTTCAATGA-TTTAAAGGTAATAAAAGT 1373
Query 1374 GAATGGAGTTCAAGTGGAAAATCTAAAACATCTAACTGAATTGGTAGAGACATGCTGGAC 1433
|||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 1374 GAATGGAGTTCAAGTGGAGAATCTAAAACATCTATCTGAATTGGTAGAGAAATGCTGCAC 1433
Query 1434 CGAGGATTTAAGACTGGACTTAGAAAACGAGAAGGTTGTGGTCCTCAACTATGCAAATGC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 CGAGGATTTAAGACTGGACTTAGAAAACGAGAAGGTTGTGGTCCTCAACTATGAAAATGC 1493
Query 1494 TAAAGAAGCTACTTCTTTGATCTTAGAACTGCATAGAATACCGTCGGCCAA 1544
||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1494 TAAAGAAGCTACTTCTTTGATCTTAAAACTTCATAGAATACCATCGGCCAA 1544
> Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1
Length=1503
Score = 339 bits (183), Expect = 5e-92
Identities = 921/1262 (73%), Gaps = 111/1262 (9%)
Strand=Plus/Plus
Query 301 GGCTCTGGATTTGTAATCTCGGGAAA-AAAGATTCTTACGAACGCTCA--T-GT--A--- 351
||||||||||||| |||| ||||||| ||| ||||||||||||||||| | || |
Sbjct 259 GGCTCTGGATTTGCAATCGCGGGAAAGAAA-ATTCTTACGAACGCTCATGTGGTGGAGGG 317
Query 352 GTTG-CTGATCACATATTTTTGCAAGTTAGAAA-ACATGGCTCACCCA--CAAAATACAA 407
| || |||||||| ||| |||| || | ||| ||||||||| | | | ||||||||
Sbjct 318 GATGAATGATCACACATTCGTGCACGTGA-AAAGACATGGCTC-TCAAGTC-AAATACAA 374
Query 408 AGCACAAGTTCGAGCGATTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGA 467
|||| |||||| | ||||| |||||| |||||||||||||| ||||||||||||| ||
Sbjct 375 AGCAAAAGTTCAAAAGATTGCACATGAGTGTGATTTGGCCATCTTGGAGATCGATAGCGA 434
Query 468 AGAGTTTTGGGAGGATATG-ATACCTTTGGAACTCGGAGAGATACCATCTCTGGATG-AA 525
||||||||| ||| |||| || || ||||| ||||||| ||||| |||| ||| ||
Sbjct 435 CGAGTTTTGGAAGGGTATGAAT-CCCTTGGAGTTCGGAGACATACCGCCTCTCAATGAAA 493
Query 526 TCTGTGGCCGTAT-TTGGCTATCCTA-CTGGTGGTGATAGC-GT-TTCTATTACTAAAGG 581
| ||| || | |||| ||||| | | |||||| | | | | | |||| |||||
Sbjct 494 T-TGTATATGT-TGTTGGTTATCC-AGAAGCTGGTGA-AACAATATGC-GTTACAAAAGG 548
Query 582 T-TATGTTTC-GAGAGTCGAATATACAAGATA-T-GC-TCACGGAGGCACTACACTACTC 636
| | ||| | | |||| || | || || | | | ||| | ||||| ||||||
Sbjct 549 TGT-TGTAACTG-GAGT-TAA-A-ACTGGAAATTACCTTCAAAGTTCCACTAAACTACT- 602
Query 637 G-CTATACAAACAGATGCGGCTATAAACCCTGGAAATAGTGGTGGTCCAGCAATCATAGG 695
| | ||||||| || || ||| ||| ||||||||||||||| || | || | |||
Sbjct 603 GACAATACAAATTGACGCAACTACCAACGATGGAAATAGTGGTGGCCCGGTTATTACAGG 662
Query 696 AAATAAAATGGCAGGTGTAGCT-TTTCAAAAAGATCCATCTGCAGATAA-TATAGGAT-A 752
||| ||| | | ||||||| | |||||| | | | || ||| || || ||| |
Sbjct 663 AAACAAAGTCGTTGGTGTAG-TATTTCAAGATCTTGGAGATG-AGAAAAGTACAGG-TGT 719
Query 753 CATAATCCCGACTCCAGTAATAAAACATTTTTTAACTGCTGTTGAAGAAAATG-GACAAT 811
| ||||||| || ||| |||| | |||||| |||||| || |||| ||| | | ||
Sbjct 720 CGTAATCCCAACCCCAATAATTAGACATTTCATAACTGGTGCAGAAG-AAA-GCTCCCAT 777
Query 812 -ATGGTGGTTTCTGCACGTTAG-ACATTTCCTATCAACT-TATGGAGAATTCTCAACTCC 868
| | || |||| || | ||| | | || | || | | ||||| ||| ||||| | |
Sbjct 778 AACGCTGTTTTCGGCTCACTAGTTC-TATCATGTC-AGTCAATGGAAAATGCTCAAATTC 835
Query 869 GTAATCACTTTAAGATGGGTCCTGAAATGACAGGGATTCTTATAAACGAAATAAAC-CCT 927
||||||| ||||||||| | ||||||| |||||| |||||||||||| |||||||| | |
Sbjct 836 GTAATCATTTTAAGATGAGCCCTGAAACGACAGGAATTCTTATAAACAAAATAAACTCAT 895
Query 928 CTGTCGGATGCTTACAAAAGGT-TAAGAAAAGATGACATCATTCTCGCAATTGATGATGT 986
| ||||| ||| |||||| | | ||||||||||||||||||||||||||||||| |||
Sbjct 896 C-GTCGGGGGCTCACAAAA-TTCTGAGAAAAGATGACATCATTCTCGCAATTGATGGTGT 953
Query 987 TCTTATAGGAAATGATGCTAA-A-GTTACTTTTCGGAATAAGGAACGAATCAA-TTTCAA 1043
|| ||||||||||||| || | || ||||||| ||| |||||||||| || ||||||
Sbjct 954 TCCAATAGGAAATGATGA-AACATGTC-CTTTTCGAAATGAGGAACGAAT-AAGTTTCAA 1010
Query 1044 TCATTTTGTTTCGATGAAGAAATTAGATGAAACAGTTTTACTTCAAGTTT-TGAGAGATG 1102
||||||| |||| ||||||||| |||||||| | | ||| | ||| || | || || |
Sbjct 1011 TCATTTTATTTCTATGAAGAAACCAGATGAAAAAATCTTAGTA-AAGGTTCTAAG-GAAG 1068
Query 1103 GGAAA-GAGCATGAGTTCCACATTATGGTAAAACCCG-T--GCCA--CC-C-CTTGTTCC 1154
||||| |||||||| | | | || | | | ||| ||| | | | || | | || |
Sbjct 1069 GGAAAAGAGCATGAATACAATATCA-GTTTAAAGCCGGTAAGTGAAACCACACATG--CA 1125
Query 1155 AGGGCATCAGTATGATA-AGC-TTCCAAGTTATTACATCTTCGCAGGCTTTGTTTTTGTA 1212
|| ||| || ||| ||| | | |||||||||||||||| |||| || |||||||||||
Sbjct 1126 AGTGCAACAATATTATATAACCTTCCAAGTTATTACATATTCGGTGGTTTTGTTTTTGTG 1185
Query 1213 CCTCTTAC-ACAGCCATACATTGACAGTACTTTGAT-TT-GCAATTGTGCAATTAAATAT 1269
||||| || | | | |||||||| | | ||||| || | ||| ||| | ||||||
Sbjct 1186 CCTCTCACTAAATCG-TACATTGAT-G-A-TTTGAGCTTAG-AAT-GTGTA-TTAAATG- 1237
Query 1270 ATGCCTG-AAAAGG-CTGGTGAACAGCTTGTCATAATTTCTTAGGTGTTAGCT-GACGAC 1326
||| | |||| | | |||||| | |||||||| ||| |||| | || || |||
Sbjct 1238 ATGAGTACAAAATTACCGATGAACAACAAGTCATAATCTCTCAGGTAAT-GCCAGATGAC 1296
Query 1327 ATCAATGCAGGATACACTGATTTCAA-GAATTTGA-AGGTA-ATAAAAGTGAATGGAGTT 1383
|| || |||||||| | ||||||| || ||| | |||| | |||||| || |||||
Sbjct 1297 ATTAACAAAGGATACAGTAATTTCAAAGA-TTT-ACAGGTGGA-AAAAGTAAACGGAGTG 1353
Query 1384 CAAGTGGAA-AATCTAAAACATCTAAC-TGAATTGGTAGAGACATGCTG-GACCGAGGAT 1440
|||| || ||| ||||||| || || |||| || ||||| ||| || | | || ||
Sbjct 1354 AAAGTA-AAGAATTTAAAACA-CTTACGTGAACTGATAGAGGGATGTTGTGGCAAAG-AT 1410
Query 1441 TTAAGACTGGACTTAGAAAACGAGAAGGTTGTGGTCCTCAACTATGCAAA-TGCTAAAGA 1499
| || ||||||| ||||| || || ||| |||| |||||||||| || ||||||| |
Sbjct 1411 CTGAGGTTGGACTTGGAAAATGACAAAGTTATGGTACTCAACTATG-AATCTGCTAAA-A 1468
Query 1500 AG 1501
||
Sbjct 1469 AG 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5