BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65642.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925665 jgi|Araly1|925665|scaffold_201226.1                        303    6e-82


> Ahg925665 jgi|Araly1|925665|scaffold_201226.1
Length=418

 Score =  303 bits (164),  Expect = 6e-82
 Identities = 193/207 (93%), Gaps = 1/207 (0%)
 Strand=Plus/Plus

Query  45   CTCTTTACCCGACGAGATTCTCCAACTAATCTCCTCCTTTATTCCGACTAAGTTCGCAAT  104
            ||||||||||||||||||| ||||||| |||| || ||||||||||| ||||||||| ||
Sbjct  156  CTCTTTACCCGACGAGATT-TCCAACTTATCTTCTTCTTTATTCCGATTAAGTTCGCGAT  214

Query  105  CAGAACCTCTGTCTTGTCCAAGCGATGGAGGCATGTATGGTCCGAAACACCTTCTCTCTA  164
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| 
Sbjct  215  CAGAACCTCTGTCTTGTCCAAGAGATGGAGACATGTATGGTCCGAAACACCTTTTCTCTC  274

Query  165  CATTGATTGCCGTAGTGCAGACACTAACTCGATAAACAAAACCCTAGCTAGATACTCAGC  224
            |||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct  275  CATTGATTGCCGTAGTGCGGACGCTAACTCGATAAACAAAACCCTAGCTAGCTATTCAGC  334

Query  225  TCCCAAAATCATGAGTTTCCATCTCTG  251
            |||||||||||||||||||||||||||
Sbjct  335  TCCCAAAATCATGAGTTTCCATCTCTG  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5