BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65650.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475671 jgi|Araly1|475671|fgenesh2_kg.2__801__AT1G65650.1 2052 0.0
> Ahg475671 jgi|Araly1|475671|fgenesh2_kg.2__801__AT1G65650.1
Length=1248
Score = 2052 bits (1111), Expect = 0.0
Identities = 1205/1250 (96%), Gaps = 8/1250 (1%)
Strand=Plus/Plus
Query 17 TCTGGCAAAGTTAAACCCTAATTCCCAAATTGGAGTCACGAAAGCAATCTCCAAATCTAT 76
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTGGCTAAGTTAAACCCTAATTCCCAAATTGGAGTCACGAAAGCAATCTCCAAATCTAT 61
Query 77 CTCATTCGGTTCGAAGAAGCTTCAAAGGCGATTCCTTTGCTTTAGCTAACTAGTAGTTTC 136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 62 CTCATTCGGTTCGAAGAAGCTTCAAAGGCGATTCCTTTACTTTAGCTAACTAGTAGTTTC 121
Query 137 GTCATGTCTTGGTGCACGATTGAGTCGGATCCTGGTGTATTTACAGAGCTTATTCAACAA 196
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 122 ATCATGTCTTGGTGCACGATTGAGTCAGATCCTGGTGTATTTACAGAGCTTATTCAACAA 181
Query 197 ATGCAAGTCAAAGGAGTGCAGGTTGAAGAATTGTATTCCCTGGATTC-TGATTCTCTCAA 255
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 182 ATGCAAGTCAAAGGAGTGCAGGTTGAAGAATTGTATTCCCTGGA-TCTTGATTCTCTCAA 240
Query 256 TAACCTCAGACCCGTATACGGTCTGATCTTTCTTTTCAAATGGCAAGCTGGGGAAAAAGA 315
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TAACCTCAGACCCGTATATGGTCTGATCTTTCTTTTCAAATGGCAAGTTGGGGAAAAAGA 300
Query 316 TGAGCGTCCAACGATCCAAGATCAAGTTTCGAACTTATTTTTCGCAAATCAGGTCATTAA 375
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TGATCGTCCAACGATCCAAGATCAAGTTTCAAACTTATTTTTCGCAAATCAGGTCATTAA 360
Query 376 CAATGCTTGTGCAACCCAAGCGATCCTTGCTATCCTCTTGAACTCTCCAGAGGTTGACAT 435
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CAATGCTTGTGCAACCCAAGCGATCCTGGCTATCCTCTTGAACTCTCCAGAGGTTGACAT 420
Query 436 CGGGCCTGAACTATCAGCGCTGAAAGAATTCACCAAGAACTTTCCATCCGACCTCAAGGG 495
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 CGGGCCTGAACTATCGGCGCTGAAAGAATTTACCAAGAACTTTCCATCCGACCTCAAGGG 480
Query 496 TTTGGCTATCAATAACAGTGATTCAATCCGGGCTGCGCACAACAGTTTCGCAAGGCCTGA 555
||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 481 TTTGGCTATCAATAACAGTGAGGCAATTCGGGCTGCTCACAACAGTTTCGCAAGGCCTGA 540
Query 556 GCCATTTGTCCCAGAGGAACAGAAAGCTGCTACAAAAGACGATGACGTATACCATTTCAT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCCATTTGTCCCAGAGGAACAGAAAGCTGCTACAAAAGACGATGACGTATACCATTTCAT 600
Query 616 AAGCTACATACCTGTGGATGGAGTCTTGTACGAGCTTGATGGGCTCAAGGAGGGACCTAT 675
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 AAGCTACATACCTGTGGATGGAGTCTTGTACGAGCTTGATGGGCTCAAGGAAGGACCTAT 660
Query 676 CAGTCTTGGCCCATGCCCCGGAGACCAAACTGGTATCGAGTGGCTGCAAATGGTTCAACC 735
||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 661 CAGTCTTGGTCCATGCCCCGGAGACCAAACCGGCATCGAGTGGCTGAAAATGGTTCAACC 720
Query 736 AGTGATCCAAGAACGGATTGAGAGGTACTCACAGAGCGAGATCAGGTTCAATCTTTTGGC 795
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AGTGATCCAAGAAAGGATTGAGAGGTACTCACAGAGCGAGATTAGGTTCAATCTTTTGGC 780
Query 796 TGTCATTAAAAACAGGAAGGATATCTACACTGCGGAACTCAAGGAGCTTCAAAGGCAGAG 855
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 781 TGTCATAAAAAACAGGAAGGATATCTACACAGCAGAACTCAAGGAGCTTCAAAGGCAGAG 840
Query 856 GGAACAGCTGTTGCAGCAGGCTAATACTTGTGTGGACAAAAGCGAAGCAGAAGCAGTTAA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAACAGCTGTTGCAGCAGGCTAATACTTGTGTGGACAAAAGCGAAGCAGAAGCAGTTAA 900
Query 916 TGCGTTGATTGCTGAGGTAGGCAGTGGGATCGAGGCTGCGAGTGATAAGATTGTAATGGA 975
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 TGCGTTGATTGAGGAGGTAGGCAGTGGGATCGAGGCTGTGAGTGATAAGATTGTAATGGA 960
Query 976 GGAAGAGAAGTTCATGAAATGGAGAACAGAGAACATTAGGAGGAAGCATAACTACATTCC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAAGAGAAGTTCATGAAATGGAGAACAGAGAACATTAGGAGGAAGCATAACTACATTCC 1020
Query 1036 GTTTCTGTTCAACTTCCTCAAACTTCTTGCTGAGAAGAAACAGTTGAAACCTCTGATTGA 1095
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 GTTTTTGTTCAACTTCCTCAAACTTCTTGCAGAGAAGAAACAGTTGAAACCTCTGATTGA 1080
Query 1096 GAAGGCCAAGAAACAGAAAACAGAAAGTTCCACTTGAGAATGTAGACACTTCTCTATGT- 1154
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 GAAGGCCAAGAAACAGAAAACAGAAAGCTCCACTTGAGAATGTAGACACTTCTCTATGTG 1140
Query 1155 TTCAGGAACTTGTTTTGTCTTCTCTCACCAAATCAATACACTCTCTCTTCCTTT-AAGTC 1213
|| |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||
Sbjct 1141 TT--GGAACTTGTTTTGTCTTCTCCCACCAAATCAATACACTATCTCGTCCTTTTAAGTC 1198
Query 1214 TT--GTATTCTAATTTTTGTTACACGACTAATAGATTCTCTAGTTTAAGT 1261
|| ||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1199 TTTTGTATTCTAATTTTTGCTACACGACAAATAGATTCTCTAGATTAAGT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5