BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65660.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1 2745 0.0
Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1 2206 0.0
Ahg937284 jgi|Araly1|937284|scaffold_501475.1 549 3e-155
> Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1
Length=1636
Score = 2745 bits (1486), Expect = 0.0
Identities = 1583/1631 (97%), Gaps = 2/1631 (0%)
Strand=Plus/Plus
Query 37 GTCGAAGCTTCACGATCGTATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 96
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GTCGAAGCTTCACGATCGTATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 60
Query 97 AGACCATAGGAAGCAAATTGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGA 156
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATCATAGGAAGCAAATCGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGA 120
Query 157 GGTTGATGAGGATGGAAAGGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCC 216
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 GGTTGATGAGGATGGAAAGGAAATCAATCCTCATATCCCGCAGTATATGTCATCTGCTCC 180
Query 217 ATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCC 240
Query 277 CAATTACACTAAGTCGTGGTATGATAGAGGTGCAAAGATCTTTCAAGCTGAAAAATACCG 336
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TAATTACACTAAGTCATGGTATGACAGAGGTGCAAAGATCTTTCAAGCTGAAAAATACCG 300
Query 337 CAAGGGAGCGTGTCAAAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGGATAG 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGGAGCGTGTCAAAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGGATAG 360
Query 397 GCCTCGTAAGATTGGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGA 456
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GCCTCGTAAGGTTGGGGCAAAGTACACAAACAAGAACATTGCACCTGATGAGAAAATTGA 420
Query 457 AAGTTTTGAACTTGACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGAC 516
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 421 GAGTTTTGAGCTTGACTACGATGGCAAGAGAGACCGATGGAATGGTTATGATCCTTCAAC 480
Query 517 CTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAA 576
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 CTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAGTACTTGAA 540
Query 577 GGAGCAGCAACTTAAGAAACTTGAGGAGAAA-AACAATAATGAAAAAGGTGATGATGCAA 635
||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||
Sbjct 541 GGAGCAGCAACTTAAGAAACTGGAGGA-AAAGAACAATAACGAAAAAGGTGATGAGGCAA 599
Query 636 ATAGTGATGGGGAAGAAGACGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGA 695
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAGTGATGGGGAGGAAGAAGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGA 659
Query 696 GCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTAGAACAACTGGTGGTGGTAGCA 755
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 GCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTCGAACAACTGGTGGTGGTAGCA 719
Query 756 CAGGAACGGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAACCTCG 815
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAACCTCG 779
Query 816 ATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCACTTCCAG 875
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 ATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCGCTTCCAG 839
Query 876 ATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAATAGTGGCCAAG 935
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 ATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAACAGTGGCCAAG 899
Query 936 CTTTGGAGTTCAAACAGCTAAACATCCATTCATGGGAAGCATTTGACAAGGGACAGGACA 995
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 CTTTGGAGTTCAAACAGCTAAACATCCATTCGTGGGAAGCATTTGACAAGGGACAGGACA 959
Query 996 TGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAGCTTTCAGGTTGCAA 1055
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 960 TGCATATGCAAGCGGCTCCCTCTCAAGCTGAATTGCTCTATAAGAGCTTTCAGGTTGCGA 1019
Query 1056 AGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATGCAGCTA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATGCAGCTA 1079
Query 1116 CAGAAGATGAAATTCCAATGGAGCTTTTACTTGGGCAAAGCGAAAGGCAAGTTGAGTATG 1175
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1080 CAGAAGATGAAATTCCAATGGAGCTTTTGCTTGGGCAAAGCGAAAGACAAGTTGAGTATG 1139
Query 1176 ACCGAGCAGGGAGGATTATAAAAGGACAGGAGGTGATATTGCCAAAGAGTAAATATGAAG 1235
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATCGAGCAGGGAGGATTATAAAGGGACAGGAGGTGATATTGCCAAAGAGTAAATATGAAG 1199
Query 1236 AAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGATCATATTGGAAAGATCATCAAT 1295
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 AAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGCTCATATTGGAAAGATCATCAAT 1259
Query 1296 GGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTCTGCTGGAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTCTGCTGGAA 1319
Query 1356 TTGAAGCTGCAGAGGCTGCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCAA 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTGAAGCTGCAGAGGCTGCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCAT 1379
Query 1416 CTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCGTCATGGGGAACTGATATTC 1475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 CTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCCTCATGGGGAACTGATATTC 1439
Query 1476 CTGAAGATTTGGAGTTGAACGAGGAGGCACTTGCTAATGCTCTTAAAAAGGAGGATCTCA 1535
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1440 CTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCTAATGCTCTTAAAAAGGAGGATCTCA 1499
Query 1536 GTAGGAGGGAAGAGAAAGATGAGAGGAAACGCAAATACAATGTCAAATACAACAACGATG 1595
|||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 GTAGGAAGGAAGAAAAAGATGAGAGGAAACGTAAATACAATGTCAAATACAACAACGATG 1559
Query 1596 TGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGGATCCAATGA 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGGATCCAATGA 1619
Query 1656 AAGATTTCCTC 1666
||||||||||
Sbjct 1620 GAGATTTCCTC 1630
> Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1
Length=1796
Score = 2206 bits (1194), Expect = 0.0
Identities = 1530/1690 (91%), Gaps = 31/1690 (2%)
Strand=Plus/Plus
Query 40 GAAGCTTCACGATCGT-ATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 98
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGCTTAACGATCGTAATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 60
Query 99 ACCATAGGAAGCAAATT-GAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAG 157
| ||||||||| ||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct 61 ATCATAGGAAG-AAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAG 119
Query 158 GTTGATGAGGATGG-AAAGGAAATTAATCCTCATATTCC-GCAGTATATGTCATCTGCTC 215
|| ||||||||||| ||| ||||| |||||||| || || | ||||||||||| ||||
Sbjct 120 GTCGATGAGGATGGCAAA-GAAATCAATCCTCACATACCTG-AGTATATGTCAAAAGCTC 177
Query 216 CATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATC 275
|||||||||| || |||||||||||||||||||||||||||| ||| ||||| | ||| |
Sbjct 178 CATGGTATCTCAACTCTGAAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAAC 237
Query 276 CC-AA-TTACACTAAGTCGTGGTATGATAGAGGTGCAAAGATCTTTCAAGCTGAAAAATA 333
|| || | | | || | |||||||||||||||||||||||| |||||| ||||||||
Sbjct 238 CCGAACTCA-AAAAAAT-ATGGTATGATAGAGGTGCAAAGATCCATCAAGCCGAAAAATA 295
Query 334 CCGCAAGGGAGCGTGTCA-AAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGG 392
|||||||||||||||| | ||||||||||||||||||||| | | ||||||| |||||||
Sbjct 296 CCGCAAGGGAGCGTGT-ATAAACTGTGGTGCAATGACGCACAGTTCTAAAGCATGTATGG 354
Query 393 ATAGGCCTCGTAAGATTGGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAA 452
|||| |||||||||||||| || || ||||||||||||||||||||| ||||||||||||
Sbjct 355 ATAGACCTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCAGCTGATGAGAAAA 414
Query 453 TTGAAAGTTTTGAACTTGACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTT 512
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 415 TCGAGAGTTTTGAACTTGACTATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTT 474
Query 513 CGA-CCTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTAC 571
| | |||||| || |||| |||||| |||||| ||||||||||| ||||||||||||||
Sbjct 475 C-ATCCTACCGTCATGTGGTAGATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTA- 532
Query 572 T-TGAAGGAGCAGCAACTTAAGAAACTTGAGGAGAAAAACAATAATGAAAAAGGTGATGA 630
| | ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 533 TCTCAAGGAGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGA 592
Query 631 TGCAAATAGTGATGGGGAAGAAGACGAA-GATGACTTAAGGGTTGATGAAGCCAAGGTTG 689
||||| ||||||||||| ||| || || || ||||||||||| ||||||||||||||||
Sbjct 593 TGCAACCAGTGATGGGGAGGAATAC-AATGACGACTTAAGGGTCGATGAAGCCAAGGTTG 651
Query 690 ATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTAGAACAACTGGTGGTG 749
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 652 ATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGAAAAACGTGTTCGAACAACTGGTGGTG 711
Query 750 GTAGCACAGGAACGGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGA 809
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGA 771
Query 810 ACCTCGATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCAC 869
| || |||||||||||||||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 772 ATCTTGATGTCAACTCAGCTCATTATGACCCGAAAACTCGATCCATGCGTGAAGATCCAC 831
Query 870 TTCCAGATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAATAGTG 929
|||||||||||||||||||||| || || ||| |||||||||||||||||||||| ||||
Sbjct 832 TTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTG 891
Query 930 GCCAAGCTTTGGAGTTCAAACAGCTAAACATCCATTCATGGGAAGCATTTGACAAGGGAC 989
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 892 GCCAAGCTTTGGAGTTCAAACAGCTAAACGTCCATTCATGTGAAGCATTTGACAAGGGAC 951
Query 990 AGGACATGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAGCTTTCAGG 1049
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 952 AGGACATGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAACTTTAAAG 1011
Query 1050 TTGCAAAGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATG 1109
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1012 TTGCAAAGGAAAAACTAAAATCTCAGACAAAAGACACAATCATGGAAAAGTACGGGAATG 1071
Query 1110 CAGCTAC-AGAAGATGAAATTCCAATGGAGCTTTTACTTGGGCAAAGCGAAAGGCAAGTT 1168
||||||| | ||| ||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1072 CAGCTACCA-AAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAGTT 1130
Query 1169 GAGTATGACCGAGCAGGGAGGATTATAAAAGGACAGGAGGTGATA-TTGCCAAAGAGTAA 1227
||||||||| | ||||| ||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1131 GAGTATGACAGGGCAGGCAGGATTATAAAGGGACAGGAGGTGATAATT-CCAAAGAGCAA 1189
Query 1228 ATATGAAGAAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGATCATATTGGAAAGA 1287
||||||||||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||
Sbjct 1190 ATATGAAGAAGATGTTCATGCCAACAATCACACAAGTGTTTGGGGTTCATGGTGGAAAGA 1249
Query 1288 TCATCAATGGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTC 1347
||||| |||||||||||||| |||||||||| ||||||||| || ||||||||||||||
Sbjct 1250 CCATCAGTGGGGATATAAATGCTGCCAGCAGACCATTCGCAACAGCTACTGCACAGGTTC 1309
Query 1348 TGCTGGAATTGAAGCTGCAGAGGC-TGCCCTTGATCTGATGAAGGCTAATATTGCTCGCA 1406
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1310 TGCTGGAATTGAAGCTGCAGAGGCGT-CCCTTGATCTGATGAAGGCTAATATTGCTCGCA 1368
Query 1407 AAGAAGCAACTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCGTCATGGGGAA 1466
||||||| || ||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1369 AAGAAGCTTCTAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAGAATGGCGACATGGGGAA 1428
Query 1467 CTGATATTCCTGAAGATTTGGAGTTGAACGAGGAGGCACTTGCTAATGCTCTTAAAAAGG 1526
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1429 CCGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCCAATGCTCTTAAAAAGG 1488
Query 1527 AGGATCTCAGTAGGAGGGAAGAGAAAGATGAGAGGAAACGCAAATACAATGTCAAATACA 1586
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1489 AGGATCTAAGTAAGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAATACA 1548
Query 1587 ACAACGATGTGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGG 1646
||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1549 CCAACGATGTGACTTCGGAAGATATGGAAGCTTATAGAATGAAGAGAGTTCACCATGAGG 1608
Query 1647 ATCCAATGAAAGATTTCCTCTGAAAGAAGTTGG-CTTTCATTCCCTTTTACCATGT-AAC 1704
|||||||||||||||||||| | || || || | |||||||| ||||| | |||
Sbjct 1609 ATCCAATGAAAGATTTCCTCGGCT-GAT-TTAAACTCT--TTCCCTTTCACCATATTAAC 1664
Query 1705 CTGAAGAAAC 1714
||||||||||
Sbjct 1665 CTGAAGAAAC 1674
> Ahg937284 jgi|Araly1|937284|scaffold_501475.1
Length=1148
Score = 549 bits (297), Expect = 3e-155
Identities = 470/554 (85%), Gaps = 10/554 (2%)
Strand=Plus/Plus
Query 55 TATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGACCATAGGAAGCAAAT 114
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 14 TATAACAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAA 73
Query 115 TGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAA 174
|||||||| |||||| | ||||||||||||| ||| |||||||| || ||| |||||||
Sbjct 74 AGAATTAGACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAA 133
Query 175 GGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCCATGGTAT-CTTAATTCTG 233
|||||| |||||||| || | ||||| ||| |||| |||||| ||| | || ||||
Sbjct 134 GGAAATCAATCCTCACATAGCTAAGTATTTGTTATCTCCTCCATTCTATGCC-AAGTCTG 192
Query 234 AAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCCAATTACACTAA-GTCG 292
|||||||||||||||||||||||| ||| ||||| | | | ||| || ||| || | |
Sbjct 193 AAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAG-CA 251
Query 293 TGGTATGATAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCGCAAGGGAGCGTGTCA 351
| ||||| ||||||||||||| ||| |||||| |||||||| ||||| |||||||||||
Sbjct 252 TATTATGACAGAGGTGCAAAGA-CTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCA 310
Query 352 AAACTGTGGTGCAATGACGCAT-AC-TGCTAAAGCTTGTATGGATAGGCCTCGTAAGATT 409
|||||||||||||||||| ||| | || ||| | ||||| || || ||||||||| ||
Sbjct 311 AAACTGTGGTGCAATGACACATGATATGA-AAA-CATGTATAGAAAGACCTCGTAAGGTT 368
Query 410 GGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGAAAGTTTTGAACTT 469
|| || || |||||||||| ||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 369 GGTGCAAAATACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTT 428
Query 470 GACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGACCTACCATCGTGTG 529
|| || ||||| ||||| ||| ||||||||||||||||||||||| | || | || ||||
Sbjct 429 GATTATGATGGTAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTG 488
Query 530 ATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAAGGAGCAGCAACTT 589
| |||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||
Sbjct 489 AGAGATCTTTATGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTT 548
Query 590 AAGAAACTTGAGGA 603
|||||||| |||||
Sbjct 549 AAGAAACTAGAGGA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5