BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65670.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2 1105 0.0
Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418 811 0.0
> Ahg493354 jgi|Araly1|493354|fgenesh2_kg.7__2787__AT4G15393.2
Length=1459
Score = 1105 bits (598), Expect = 0.0
Identities = 1189/1464 (81%), Gaps = 82/1464 (6%)
Strand=Plus/Plus
Query 1 ATGGTAGAAGTTTATGAGTTATTAACTGTGATGGTTTCACTCATTGTGGTGAAGCTATTT 60
|||||||| ||||||||||| | ||||| | ||||||||||| ||||||||||| | |
Sbjct 1 ATGGTAGAGGTTTATGAGTTGTGGGCTGTGGTAGTTTCACTCATAGTGGTGAAGCTGTGT 60
Query 61 CATTGGATATATCAGTCGAAG-AATCCGAA-ACCTAATGAAAAACTACCTCCAGGGTCGA 118
|||||||| ||||||| | || |||||||| | ||||| |||||| |||||||| ||||
Sbjct 61 CATTGGATCTATCAGT-GGAGAAATCCGAAGA-GTAATGGAAAACTTCCTCCAGGATCGA 118
Query 119 TGGGTTTTCCGA-TCATTGGAGAGACTTTTGAGTTCATGAAGCCTCATGACGCTTTTCAG 177
|||||||||| | |||| ||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 119 TGGGTTTTCC-AGTCATCGGAGAGACTTTCGAGTTCATGAAGCCTCATGATGCTATTCAG 177
Query 178 -TTTCCAACATTCATCAAGGAGAGAA-TCA-TCAGATATGGACCAATTTTTCGGACAAGT 234
| | |||||||| | ||||||| || | | ||||| |||||||| ||||| |||||||
Sbjct 178 ATAT-CAACATTCGTGAAGGAGA-AAGT-ACTCAGACATGGACCAGTTTTTAGGACAAGC 234
Query 235 TTATTTGGAGCCAAAGTTATAATCTCGACGGATATTGAATTAAATATGGAGATAGCAAAG 294
|||||||||| |||||||||||| || || ||||||| | | || |||||||||||||||
Sbjct 235 TTATTTGGAGGCAAAGTTATAATTTCCACTGATATTGGACTGAACATGGAGATAGCAAAG 294
Query 295 ACAAACCATGCTCCTGGTCT-CACAAAGAGCATAGCACAACTCTTTGGAGAAAACAACTT 353
||||| ||| ||| ||| | | | |||||| ||| | || ||||| | ||| |||||
Sbjct 295 ACAAATCATATTCCCGGTATGC-CGAAGAGCTTAGTGCGGCTATTTGGGGCAAATAACTT 353
Query 354 GTTTTTTCAGAGCAAGGAGT-CTCATAAACATGTCCGAAACTTGACATTCCAGTTGTTAG 412
| ||| | || ||||| | |||||||||||| ||| | ||||||| |||||| ||||
Sbjct 354 G-TTTGT--GAATAAGGA-TACTCATAAACATGCCCGCAGCTTGACAAACCAGTTTTTAG 409
Query 413 GTTCACAAGGTTTGAAATTGAGTG-TGATGCAAGACATCGATCTCTTGACTCGCACACAC 471
|||| |||| ||||||||| || | |||| || ||||| ||| ||||| |||||||||||
Sbjct 410 GTTCGCAAGCTTTGAAATTAAG-GATGATTCAGGACATTGATTTCTTGGCTCGCACACAC 468
Query 472 ATGGAA-GAAGGAGCTAGGAGAGGTTGTCTTGACGTCAAGGAAA-TATCAAGCAAGAT-T 528
|| ||| ||||||||||||| ||||||||||||||| ||||||| | ||||||||||
Sbjct 469 AT-GAAGGAAGGAGCTAGGAAAGGTTGTCTTGACGTGAAGGAAACGA-CAAGCAAGATCA 526
Query 529 TTAATTGAATGCCTTGCAAAGAAAGTTACCGGCGACATGGAACCAGAGGCGGCGAAAGAA 588
|| |||||||| ||||| |||||||| | || || |||||||||||||| || ||||||
Sbjct 527 TT-ATTGAATGTCTTGCGAAGAAAGTAATGGGGGAGATGGAACCAGAGGCAGCAAAAGAA 585
Query 589 CTCGCACTCTGTTGGAGATGTTTTCCGAGTGG-CTGGTTTAGATTCCCTCT-CAATCTTC 646
||| |||||||||||| || |||||| | || |||||| ||||| || | ||| | |
Sbjct 586 CTCACACTCTGTTGGACAT-TTTTCCCAACGGAATGGTTTCGATTCGCT-TGGAATATCC 643
Query 647 CTGGGACTGGTGTTTATAAAATGATGAAAGCAAGAAAGAGGATGCTTCACTTACTAAAGG 706
| |||||||| |||||| |||| |||| |||||||| ||||| | | ||||||| |
Sbjct 644 CGGGGACTGGAGTTTATCGAATGGTGAAGGCAAGAAATCGGATGATAAAGGTACTAAAAG 703
Query 707 AGACAATACTGAAGAAGAGAGCATCAGGAGAGGAGTTAGGGGA-GTTCTTCAAGATCATC 765
|||| |||| ||||| ||||||||||||||||| || ||||| ||| || |||| ||||
Sbjct 704 AGACGGTACTTAAGAAAAGAGCATCAGGAGAGGAATTGGGGGAGGTT-TTTAAGACCATC 762
Query 766 -TT-----T---G--A-AGGAGCGGAAACAATGAG-CGTAGACAATGCGATCGAGTACAT 812
|| | | | |||||| ||||| || || | |||| | ||||| |||||||||
Sbjct 763 TTTGGAGATACGGAAAGAGGAGCAGAAACTATAAGTC-TAGAGAGTGCGACCGAGTACAT 821
Query 813 ATACACCT-TATTTCTGCTTGCTAACGAAACAACACC-ACGTATTCTTGCAGCTACAATA 870
|| | || | ||| |||||||||||||||||||||| | | | ||||| |||||||||
Sbjct 822 ATTTA-CTCTGTTTTTGCTTGCTAACGAAACAACACCAATG-GTCCTTGCGGCTACAATA 879
Query 871 AAGCTCATAAGTGACAACCCTAAAGTCATGAAGGAGTTGCATAGAGAGCATGAGGGAATT 930
||||||||||| |||||||||||||||||| |||||||||| ||||| ||||| ||||||
Sbjct 880 AAGCTCATAAGCGACAACCCTAAAGTCATGCAGGAGTTGCAAAGAGAACATGAAGGAATT 939
Query 931 GTCCGGGGTAAGACTGAGAAG---GAG-A-CCAG-CATAACATGGGAAGAGTACAAATCT 984
||||| | ||||| ||||||| ||| | | | | ||||||||||||| ||||||||
Sbjct 940 GTCCGAGATAAGATTGAGAAGAATGAGAAGGCTGACTTAACATGGGAAGACTACAAATCA 999
Query 985 ATGACATTTAC-CCA-AATGGTGATCA-ATGAGTCCCTTAGGATCACAAGCACGGCGCCA 1041
||||| ||| | ||| |||||||| | ||||||| ||||||||||||||||||| ||
Sbjct 1000 ATGAC-TTT-CACCATGATGGTGAT-ACATGAGTCTCTTAGGATCACAAGCACGGTACCG 1056
Query 1042 ACAGTAT--TTAGAATATTTGATCATGAGTTCCAAGTTGGTTCTTATAAAATTCCAGCTG 1099
|| | || |||||||| |||||| ||||||| || ||||| ||||| |||||||||||
Sbjct 1057 AC-G-ATGCTTAGAATAATTGATCGTGAGTTCAAATTTGGTGATTATACAATTCCAGCTG 1114
Query 1100 GTTGGATCTTCATGGGCTATCCAAACAAT-CATTTCAATCCA-AAAACTTACGATGACCC 1157
|||||||||| ||||| ||||| | | |||||||||||| |||| || ||||||||
Sbjct 1115 GTTGGATCTTTATGGGTTATCCTTA-TGTGCATTTCAATCCAGAAAA-ATATGATGACCC 1172
Query 1158 TTTAGTATTCAATCCATGGCGTTGGGAGGGAAAAGACTTGGGCGCGATCGTCTCTC-GGA 1216
||||| ||| ||||||||||| ||| |||||||||| ||| |||| | |||||| | |||
Sbjct 1173 TTTAGCATTTAATCCATGGCGCTGGAAGGGAAAAGATTTGAGCGCAAACGTCTC-CAGGA 1231
Query 1217 CTTACATTCCCTTTGG-TGCTGGCTCTAGACAATGTGTAGGAGCTGAGTTTGCTAAGCTG 1275
||||| |||||||||| | |||| ||||||| ||||||||||||||| || | |||| ||
Sbjct 1232 CTTACCTTCCCTTTGGCT-CTGGTTCTAGACTATGTGTAGGAGCTGAATTCGTTAAGTTG 1290
Query 1276 CAAATGGCCATTTTTATCCATCATTTGTCTAGAGACAGGTGGTCAATGAAGATAG-GAAC 1334
|| |||||||||||||||||||||||||||||| |||||||||||||||||| || || |
Sbjct 1291 CAGATGGCCATTTTTATCCATCATTTGTCTAGATACAGGTGGTCAATGAAGACAGAGA-C 1349
Query 1335 -CACAATACTTCGAA-ACTTTGTACTCATGTTTCCAAATGGATGTGAGGTTCAATTCTTA 1392
| | ||||||||| | |||||||| ||| ||||| ||||| || |||||| ||| |
Sbjct 1350 TC-CTGTACTTCGAAGA-TTTGTACTTATGCTTCCACGTGGATCAGATGTTCAAATCTCA 1407
Query 1393 AAAGACACTGAAG-TGGATAACTC 1415
||||||| || ||||||||||
Sbjct 1408 GAAGACACCAAAACTGGATAACTC 1431
> Ahg355245 jgi|Araly1|355245|fgenesh1_pg.C_scaffold_7002418
Length=1311
Score = 811 bits (439), Expect = 0.0
Identities = 673/783 (86%), Gaps = 28/783 (4%)
Strand=Plus/Plus
Query 1 ATGGTAGAAGTTTATGAGTTATTAACTGTGATGGTTTCACTCATTGTGGTGAAGCTATTT 60
||||||||||||||||||||||| || ||| | || |||||||| || |||||||||||
Sbjct 1 ATGGTAGAAGTTTATGAGTTATTGACCGTGGTAGTCTCACTCATAATGATGAAGCTATTT 60
Query 61 CATTGGATATATCAGTCGAAG-AATCCGAAACCTAATGAAAAACTACCTCCAGGGTCGAT 119
|||||||| ||||||| | || ||||||||| ||| |||||||||||||||||||||||
Sbjct 61 CATTGGATCTATCAGT-GGAGAAATCCGAAAAGTAACGAAAAACTACCTCCAGGGTCGAT 119
Query 120 GGGTTTTCCGATCATTGGAGAGACTTTTGAGTTCATGAAGCCTCATGACGCTT-TTCAGT 178
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 120 GGGTTTTCCGATCATCGGAGAGACTTTTGAGTTCATGAAGCCTCATGACG-TTCTTCAGT 178
Query 179 TTCCAACATTCATCAAGGAGAGAAT-CATCAGATATGGACCAATTTTTCGGACAAGTTTA 237
||||||||||| |||| |||||| | | |||||||||||||| ||||||||||||| |||
Sbjct 179 TTCCAACATTCGTCAAAGAGAGAGTTC-TCAGATATGGACCAGTTTTTCGGACAAGCTTA 237
Query 238 TTTGGAGCCAAAGTTATAATCTCGACGGATATTGAATTAAATATGGAGATAGCAAAGACA 297
||||||||||||| ||||||||||| |||| ||||| | ||| |||||||||| ||| ||
Sbjct 238 TTTGGAGCCAAAGCTATAATCTCGATGGATCTTGAAATGAATGTGGAGATAGCGAAGGCA 297
Query 298 AACCATGCTCC-TGGTCTCACAAAGAGCATAGCACAACTCTTTGGAGAAAA-CAACTTGT 355
|| |||| ||| |||| |||| |||||||| |||| || ||||| ||||| ||||||||
Sbjct 298 AATCATG-TCCCTGGTGTCACGAAGAGCATTGCACGGCTATTTGG-GAAAAACAACTTGT 355
Query 356 TTTTTCAGAGCAAGGAGTCTCATAAACATGTCCGAAACTTGACATTCCAGTTGTTAGGTT 415
|| | || |||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 356 TTATCCAAAGCAAGCAGTCCCATAAACATGTCCGGAACTTGACATTCCAGTTGTTAGGTC 415
Query 416 CACAAGGTTTGAAA-TTGAGTG-TGATGCAAGACA-TCGATCTCTTGACTCGCACACACA 472
||||| |||| ||| ||||| | || || |||| | ||||||||||| |||||||| |||
Sbjct 416 CACAATGTTT-AAAGTTGAG-GATGGTGGAAGA-AGTCGATCTCTTGGCTCGCACATACA 472
Query 473 TGGAAGAAGGAGCTAGGAGA-GGTTGTCTTGACGTCAAGGAAATATCAAGCAAGATTTTA 531
|||| ||||||||||||| | ||||| |||||||||||||||| |||||||||||| |||
Sbjct 473 TGGAGGAAGGAGCTAGGA-ACGGTTGCCTTGACGTCAAGGAAACATCAAGCAAGATCTTA 531
Query 532 ATTGAATGCCTTGCAAAGAAAGTTACCGGCGACATGGAACCAGAGGCGGCGAAAGAACTC 591
|||||||| |||||||||||||||| || || |||||||||||||| || ||||||||
Sbjct 532 ATTGAATGTCTTGCAAAGAAAGTTATGGGTGAAATGGAACCAGAGGCAGCAAAAGAACTT 591
Query 592 GCACTCTGTTGGAGATGTTTTCCGAGTGGCT-GGTTT-AGATTCCCTCTC-AATC-TTCC 647
||||| |||||||||| |||||| || || | ||||| | |||| || | || | ||||
Sbjct 592 GCACTATGTTGGAGATATTTTCCAAG-GGATTGGTTTCA-ATTCTCT-TGGAA-CGTTCC 647
Query 648 TGGGACTGGTGTTTATAAAATGATGAAAGCAAGAAAGAGGATGCTTCACTT-ACTAAAGG 706
|||| ||||||| ||| ||||||||| ||||||||| ||||| | | || | ||||||
Sbjct 648 TGGGGCTGGTGTCTATCGAATGATGAAGGCAAGAAAGCGGATGATGAAGTTGA-TAAAGG 706
Query 707 AGACAATACTGAAGAAGAGAGCATCAGGAGAGGAGTTAGGGGAGTTCTTCAAGATCATCT 766
||| |||| |||||||||||||||||||||||||| || || || |||||||||||||
Sbjct 707 AGATGGTACTAAAGAAGAGAGCATCAGGAGAGGAGTTTGGAGAATTTTTCAAGATCATCT 766
Query 767 TTG 769
|||
Sbjct 767 TTG 769
Score = 483 bits (261), Expect = 2e-135
Identities = 407/477 (85%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 845 CACCACGTATTCTTGCAGCTACAATAAAGCTCATAAGTGACAACCCTAAAGTCAT-GAAG 903
||||| | || ||||| |||||| ||||||||||||| ||| |||||||||| | |||
Sbjct 821 CACCAGGGATCCTTGCGGCTACAGTAAAGCTCATAAGCGACCACCCTAAAGTTGTGGAA- 879
Query 904 GAGTTGCATAGAGAGCATGAGGGAATTGTCCGGGGTAAGACTGAGAAGGAGACCAGCATA 963
|||||| ||| |||||||||||||||||| || |||||||||||||||||| | || |
Sbjct 880 GAGTTGAATAAAGAGCATGAGGGAATTGTTCGAGGTAAGACTGAGAAGGAGGCTGGCCTT 939
Query 964 ACATGGGAAGAGTACAAATCTATGACATTT-ACCCA-AATGGTGATCAATGAGTCCCTTA 1021
||||||||||| |||||||| ||||| ||| || || || |||||| |||||||| ||||
Sbjct 940 ACATGGGAAGACTACAAATCAATGAC-TTTCACACACAA-GGTGATTAATGAGTCACTTA 997
Query 1022 GGATCACAAGCACGGCGCCAACAGTATTTAGAATATTTGATCATGAGTTCCAAGTTGGTT 1081
||||||||||||||||||| || || |||||||| ||| ||||| ||||| ||||||
Sbjct 998 GGATCACAAGCACGGCGCCGACTGTGCTTAGAATAACTGACCATGATTTCCAGGTTGGTG 1057
Query 1082 CTTATAAAATTCCAGCTGGTTGGATCTTCATGGGCTATCCAAACA-ATCATTTCAATCC- 1139
||||| ||||||||||||||||||||||||||||||||| || | ||||||| |||
Sbjct 1058 ATTATACAATTCCAGCTGGTTGGATCTTCATGGGCTATCCTAATGTA-CATTTCAGTCCC 1116
Query 1140 AAAAACTTACGATGACCCTTTAGTATTCAATCCATGGCGTTGGGAGGGAAAAGACTTGGG 1199
||||| | ||||||||||||| ||||| ||||||||||||||| || || |||||||| |
Sbjct 1117 AAAAAAT-ACGATGACCCTTTGGTATTTAATCCATGGCGTTGGAAGAGAGAAGACTTGAG 1175
Query 1200 CGCGATCGTCTCTCG-GACTTACATTCCCTTTGGTGCTGGCTCTAGACAATGTGTAGGAG 1258
| | ||| |||| | |||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1176 CTCAATCCTCTC-CAAGACTTACATTCCCTTTGGTGCTGGTTCTAGACTATGTGTGGGAG 1234
Query 1259 CTGAGTTTGCTAAGCTGCAAATGGCCATTTTTATCCATCATTTGTCTAGAGACAGGT 1315
||||||| |||||||| |||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1235 CTGAGTTCGCTAAGCTTCAAATGGCCATTTTTATCCATCATATGTTTAGATACAGGT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5