BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65680.1 Length=822 Score E Sequences producing significant alignments: (Bits) Value Ahg322168 jgi|Araly1|322168|fgenesh1_pm.C_scaffold_4002225 1101 0.0 > Ahg322168 jgi|Araly1|322168|fgenesh1_pm.C_scaffold_4002225 Length=1449 Score = 1101 bits (596), Expect = 0.0 Identities = 725/788 (92%), Gaps = 6/788 (1%) Strand=Plus/Plus Query 7 ATTCTTGTCGTAGATCGATACTACATGCTCATGAACTTACTCTTTGCTCTAACTTGTCTC 66 |||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 7 ATTCTTTTCGTAGAGCGATATTACATGATCATGAACTTACTCTTTGCTCTAACTTGTCTC 66 Query 67 CTCTTGAACTTAACTCATTGCTTTAGCCCCAAGAAATTCAACATTTCAGCCGCCACGACC 126 || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 67 CTGTTAAACTTAACTCATTGCTTTAGCCCCAAGAAACTCAACATTTCAGCCGCCACGACC 126 Query 127 AGCGATTCTGATTGGTCTATCGCCGGATCTACGTGGTATGGTAACCCCACCGGATACGGA 186 || ||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||| Sbjct 127 AGTGATTCTGATTGGTCTATTGCCGGAGCTACGTGGTATGGCAGCCCCACCGGATACGGA 186 Query 187 AGCGACGGTGGAGCTTGTGGTTATGGAAATGCTGTTGCACAACCTCCGTTTTCGAAAATG 246 |||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| Sbjct 187 AGCGACGGTGGAGCTTGTGGTTATGGAACTGCCGTGGCACAACCTCCGTTTTCGAGCATG 246 Query 247 GTATCAGCCGGAGGTCCGTCGTTGTTCAAGTCAGGAAAAGGATGTGGTGCATGTTACCAG 306 |||||||| || ||| ||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 247 GTATCAGCAGGCGGTACGTCGTTGTTCAAGTCAGGGAAAGGATGTGGCGCATGTTACCAG 306 Query 307 GTAAAATGCACTTCGAAATCGGCATGTTCGAAAAATCCTGTTACGGTGGTCATTACAGAT 366 ||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||| Sbjct 307 ATAAAATGCACTTCGAAATCTGCATGTTCGAAAAATCCTGTTACGATAGTCATCACAGAT 366 Query 367 GAATGTCCTGGATGCGTTA-AGGAGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 367 GAATGTCCTGGATGCGTTACAG-AGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425 Query 426 TGCCATGGCAATTTCTGGTCAAGATAGTCAGCTTCGCAATGTC-GGAGAATTGCAGATTC 484 ||||||||| ||||||||| ||||||||||||||||||||| | |||| |||||||||| Sbjct 426 TGCCATGGCGATTTCTGGTAAAGATAGTCAGCTTCGCAATG-CAGGAGTTTTGCAGATTC 484 Query 485 TTTATA-AAAAGGTTGAGTGCAACTATATAGGCAAAACGGTGACATTTCAAGTGGATAAA 543 |||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||| Sbjct 485 TTTATAGAAAAG-TTGAGTGCAACTATGTTGGCAAAACGGTGACGTTTCAAGTGGATAAA 543 Query 544 GGTTCAAACGCTAACTCCTTCGCGGTTTTGGTTGCGTATGTAAACGGAGACGGCGAAATT 603 |||||||||||| ||| ||| |||| ||| |||| ||||| ||||||||||||||||||| Sbjct 544 GGTTCAAACGCTTACTACTTTGCGGCTTTAGTTGAGTATGAAAACGGAGACGGCGAAATT 603 Query 604 GGCCGAATTGAACTCAAACAAGCTCTAGATTCTGACAAGTGGTTGTCTATGAGCCAATCA 663 |||||| | |||||||||||||||||||||||||||| |||| ||||||||| ||||| | Sbjct 604 GGCCGAGTCGAACTCAAACAAGCTCTAGATTCTGACACGTGGCTGTCTATGACCCAATTA 663 Query 664 TGGGGCGCCGTGTGGAAGCTCGACGTGTCGTCACCTTTGCGTGCCCCGCTCTCTCTCCGA 723 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 664 TGGGGTGCCGTGTGGAAGCTCGACGTGTCCTCACCTTTGCGTGCCCCGCTGTCTCTCCGA 723 Query 724 GTGACTTCGTTGGAATCCGGCAAGACTGTTGTGGCTTCCAATGTCATTCCCGCAAACTGG 783 ||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||| |||| Sbjct 724 GTGACTTCGCTGGACTCCGGCGAGACTGTTGTCGCTTCCAATGTCATTCCGGCAGGCTGG 783 Query 784 CAACCCGG 791 |||||||| Sbjct 784 CAACCCGG 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30383964849 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5