BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65680.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322168 jgi|Araly1|322168|fgenesh1_pm.C_scaffold_4002225 1101 0.0
> Ahg322168 jgi|Araly1|322168|fgenesh1_pm.C_scaffold_4002225
Length=1449
Score = 1101 bits (596), Expect = 0.0
Identities = 725/788 (92%), Gaps = 6/788 (1%)
Strand=Plus/Plus
Query 7 ATTCTTGTCGTAGATCGATACTACATGCTCATGAACTTACTCTTTGCTCTAACTTGTCTC 66
|||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 7 ATTCTTTTCGTAGAGCGATATTACATGATCATGAACTTACTCTTTGCTCTAACTTGTCTC 66
Query 67 CTCTTGAACTTAACTCATTGCTTTAGCCCCAAGAAATTCAACATTTCAGCCGCCACGACC 126
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 67 CTGTTAAACTTAACTCATTGCTTTAGCCCCAAGAAACTCAACATTTCAGCCGCCACGACC 126
Query 127 AGCGATTCTGATTGGTCTATCGCCGGATCTACGTGGTATGGTAACCCCACCGGATACGGA 186
|| ||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||
Sbjct 127 AGTGATTCTGATTGGTCTATTGCCGGAGCTACGTGGTATGGCAGCCCCACCGGATACGGA 186
Query 187 AGCGACGGTGGAGCTTGTGGTTATGGAAATGCTGTTGCACAACCTCCGTTTTCGAAAATG 246
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |||
Sbjct 187 AGCGACGGTGGAGCTTGTGGTTATGGAACTGCCGTGGCACAACCTCCGTTTTCGAGCATG 246
Query 247 GTATCAGCCGGAGGTCCGTCGTTGTTCAAGTCAGGAAAAGGATGTGGTGCATGTTACCAG 306
|||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 247 GTATCAGCAGGCGGTACGTCGTTGTTCAAGTCAGGGAAAGGATGTGGCGCATGTTACCAG 306
Query 307 GTAAAATGCACTTCGAAATCGGCATGTTCGAAAAATCCTGTTACGGTGGTCATTACAGAT 366
||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||
Sbjct 307 ATAAAATGCACTTCGAAATCTGCATGTTCGAAAAATCCTGTTACGATAGTCATCACAGAT 366
Query 367 GAATGTCCTGGATGCGTTA-AGGAGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 367 GAATGTCCTGGATGCGTTACAG-AGTCGGTCCATTTCGATTTGAGTGGTACAGCGTTTGG 425
Query 426 TGCCATGGCAATTTCTGGTCAAGATAGTCAGCTTCGCAATGTC-GGAGAATTGCAGATTC 484
||||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||||||
Sbjct 426 TGCCATGGCGATTTCTGGTAAAGATAGTCAGCTTCGCAATG-CAGGAGTTTTGCAGATTC 484
Query 485 TTTATA-AAAAGGTTGAGTGCAACTATATAGGCAAAACGGTGACATTTCAAGTGGATAAA 543
|||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 485 TTTATAGAAAAG-TTGAGTGCAACTATGTTGGCAAAACGGTGACGTTTCAAGTGGATAAA 543
Query 544 GGTTCAAACGCTAACTCCTTCGCGGTTTTGGTTGCGTATGTAAACGGAGACGGCGAAATT 603
|||||||||||| ||| ||| |||| ||| |||| ||||| |||||||||||||||||||
Sbjct 544 GGTTCAAACGCTTACTACTTTGCGGCTTTAGTTGAGTATGAAAACGGAGACGGCGAAATT 603
Query 604 GGCCGAATTGAACTCAAACAAGCTCTAGATTCTGACAAGTGGTTGTCTATGAGCCAATCA 663
|||||| | |||||||||||||||||||||||||||| |||| ||||||||| ||||| |
Sbjct 604 GGCCGAGTCGAACTCAAACAAGCTCTAGATTCTGACACGTGGCTGTCTATGACCCAATTA 663
Query 664 TGGGGCGCCGTGTGGAAGCTCGACGTGTCGTCACCTTTGCGTGCCCCGCTCTCTCTCCGA 723
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 664 TGGGGTGCCGTGTGGAAGCTCGACGTGTCCTCACCTTTGCGTGCCCCGCTGTCTCTCCGA 723
Query 724 GTGACTTCGTTGGAATCCGGCAAGACTGTTGTGGCTTCCAATGTCATTCCCGCAAACTGG 783
||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||| ||||
Sbjct 724 GTGACTTCGCTGGACTCCGGCGAGACTGTTGTCGCTTCCAATGTCATTCCGGCAGGCTGG 783
Query 784 CAACCCGG 791
||||||||
Sbjct 784 CAACCCGG 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5