BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65690.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925672 jgi|Araly1|925672|scaffold_201233.1 1243 0.0
Ahg330253 jgi|Araly1|330253|fgenesh1_pm.C_scaffold_7002480 398 5e-110
> Ahg925672 jgi|Araly1|925672|scaffold_201233.1
Length=799
Score = 1243 bits (673), Expect = 0.0
Identities = 759/801 (95%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 36 GTCATCAAGATTTTCCAAAAATGTCTCAACACCAAAAAATCTATCCGGTCCAAGATCCAG 95
|||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1 GTCATCAAGATTCTCCAAAAATGTCCCAACACCAAAAAATCTATCCGGTCCACGATCCTG 60
Query 96 AAGCCGCAACAGCGCGTCCAACAGCTCCTTTGGTTCCTCGTGGTTCCTCTAGATCAGAAC 155
||||| |||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 61 AAGCCCCAACGGCACGTCCAACGGCTCCTTTGGTTCCTCGTGGTTCCTCAAGATCAGAAC 120
Query 156 ATGGAGACCCATCCAAAGTCCCTTTGAACCAAAGGCCACAACGGTTCGTGCCGTTGGCTC 215
|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 121 ATGGAGACCCATCCAAAGTCCCTTTGAACCAACGGCCACAACAGTTCGTACCGTTGGCTC 180
Query 216 CTCCAAAGAAGAGAAGAAGTTGTTGTTGCAGATGCTTTTGCTACACGTTCTGCTTTCTTT 275
||||||||||||||||||||||||||||||||||| | || |||||||||||||| || |
Sbjct 181 CTCCAAAGAAGAGAAGAAGTTGTTGTTGCAGATGCGTGTGTTACACGTTCTGCTTCCTCT 240
Query 276 TGCTTCTTGTCGTTGCAGTAGGCGC-ATCCATTGGTATACTATACCTTGTCTTTAAACCG 334
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 241 TGCTTCTTGTTGTTGCAGTAGGCGCGA-CGATTGGTATACTATACCTTGTCTTTAAACCG 299
Query 335 AAGCTACCGGATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCACTGAACCAAGAC 394
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AAGTTACCGGATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCATTGAACCAAGAC 359
Query 395 TCGAGTTTGACTACGGCTTTTAACGTGACTATAACCGCTAAGAATCCGAACGAGAAGATT 454
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TCGAGTTTGACTACGGCTTTTAACGTGACCATAACCGCTAAGAATCCGAACGAGAAGATT 419
Query 455 GGAATTTATTATGAAGATGGGAGCAAGATTACCGTGTGGTACATGGAACATCAACTAAGC 514
|||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 420 GGAATTTACTATGAAGATGGGAGCAAGATTACTGTGTGGTACCTGGAAAATCAACTAAGC 479
Query 515 AATGGGTCGTTGCCAAAATTTTACCAAGGACATGAAAATACGACAGTGATATACGTAGAA 574
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 AATGGGTCGTTGCCAAAATTTTACCAAGGCCATGAAAATACGACAGTGATATACGTAGAA 539
Query 575 ATGACTGGTCAAACACAAAATGCATCGGGTTTAAGGACGACATTAGAAGAGCAACAACAA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGACTGGTCAAACACAAAATGCATCGGGTTTAAGGACGACATTAGAAGAGCAACAACAA 599
Query 635 AGAACCGGGAATATACCATTGAGAATTAGAGTAAACCAACCGGTTCGGGTCAAATTTGGG 694
|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||
Sbjct 600 AGAACCGGGAATATACCATTGAGAATTAGAGTTAACCAACCGGTTCGGATTAAATTCGGG 659
Query 695 AAGTTGAAGCTCTTCGAAGTAAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGCTTG 754
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 660 AAGTTGAAGCTCTTCGAGGTGAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGTTTG 719
Query 755 GCTACCAATAATGTTATTAAGATTCAAAGTAGTAGTTGCAAATTTCGTCTTAGGTTATAG 814
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 720 GCTACAAATAATGTTATTAAGATTCAGAGTAGTAGTTGCAAATTTCGACTTAGGTTATAA 779
Query 815 ATCCGttttttt-ttATATAA 834
|||||||||||| || |||||
Sbjct 780 ATCCGTTTTTTTATT-TATAA 799
> Ahg330253 jgi|Araly1|330253|fgenesh1_pm.C_scaffold_7002480
Length=747
Score = 398 bits (215), Expect = 5e-110
Identities = 465/583 (80%), Gaps = 28/583 (5%)
Strand=Plus/Plus
Query 229 AAGAAGTTGTTGTTGCAGATGCTTTTGCTACACGTTCTGCTT-T-CT-TTTGCTTCTTGT 285
|||||||||||| ||||||||| | |||||||| || ||| | || ||| || ||| |
Sbjct 162 AAGAAGTTGTTGGTGCAGATGCGTGTGCTACAC--ACTTCTTGTCCTCTTT-CTCCTTAT 218
Query 286 CGTT-GCAGTAGGCGC-ATCCATTGGTATACTATACCTTGTCTTTAAACCGAAGCTACCG 343
||| | || || || || | |||||||||| ||||||||||||| ||| || |||||
Sbjct 219 TGTTATC-GTTGGAGCGAT-CGTTGGTATACTCTACCTTGTCTTTAGACCAAAATTACCG 276
Query 344 GATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCA-CTGAACCAAGACTCGAGTTT 402
|||||| |||||||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct 277 GATTACAATATTGACCGGTTACAGCTCACCCGGTTT-CAACTAAACCAAGACTTGAGTTT 335
Query 403 GA-CTACGGCTTTTAACGTGACTATAACCGCTAAGAATCCGAACGAGAAGATTGGAATTT 461
| |||| || |||||||| || |||||||| || ||||| |||||||| || |||||||
Sbjct 336 -ATCTACCGCGTTTAACGTTACCATAACCGCGAAAAATCCCAACGAGAAAATCGGAATTT 394
Query 462 ATTATGAAGATGGGAGCAAGA-TTACCGTGTGGTACATGGAACATCA-ACTAAGCAATGG 519
| ||||||||||| |||| || ||| || | ||||||| || | || ||| || |||||
Sbjct 395 ACTATGAAGATGGAAGCA-GAATTAGTGTCTTGTACATGCAA-ACCAGACTCAGTAATGG 452
Query 520 GTCGTTGCCAAAATTTTACCAAGGACATGAAAATACGAC-AGTGATATACGTAGAAATGA 578
||| ||||| ||||| |||||||||||||| |||||||| | | |||| |||||||||||
Sbjct 453 GTCATTGCCGAAATTCTACCAAGGACATGAGAATACGACTATT-ATATCCGTAGAAATGA 511
Query 579 CTGGTCA-AACACAAAATGCATCGGGTTTAAGGACGACATTAG-AAGAGCAACAACAAAG 636
||||| || || |||||| | || ||| ||||||||| | ||||||||||||
Sbjct 512 CTGGTTTTAAT-CAGAATGCAACAAGTATAATGACGACATT-GCAAGAGCAACAACGGTT 569
Query 637 AACCGGGAAT-ATACCATTGAGAATTAGAGTAAACCAACCGGTTCGGGTCAAATTTGGGA 695
||| || || ||||| ||| | |||||||| | ||||||||||||| ||||| | ||||
Sbjct 570 AACAGG-AAGCATACCGTTGCGGATTAGAGTTACCCAACCGGTTCGGATCAAACTCGGGA 628
Query 696 AGTTGAAGCTCTTCGAAGTAAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGCTTGG 755
| || ||| | | ||||||||||| ||||| || |||||||||| ||||||||||| |
Sbjct 629 AATTAAAGTTGATGGAAGTAAGATTTTTGGTTAGGTGTGGTGTATCCGTTGATAGCTTAG 688
Query 756 CTACCAATAATGTTATTAAGATTCA-AAGTAGTAGTTGCAAAT 797
|| | || | ||| |||| | || | |||||||| |||||||
Sbjct 689 CTGCTAACAGTGTGATTAGGGTT-AGAAGTAGTAACTGCAAAT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5