BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65710.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315605 jgi|Araly1|315605|fgenesh1_pm.C_scaffold_2000638 1544 0.0
Ahg493700 jgi|Araly1|493700|fgenesh2_kg.7__3133__AT5G37010.1 130 3e-29
> Ahg315605 jgi|Araly1|315605|fgenesh1_pm.C_scaffold_2000638
Length=1773
Score = 1544 bits (836), Expect = 0.0
Identities = 1218/1390 (88%), Gaps = 75/1390 (5%)
Strand=Plus/Plus
Query 119 ATGGGTTGCTGTCTCAGCAAGAAACCTTC-CC--CTTCTCTTCCCTCTAGTGTTAAACCC 175
||||||||||||||||||||||||||||| || || |||||||||||| || | | ||
Sbjct 1 ATGGGTTGCTGTCTCAGCAAGAAACCTTCTCCTTCTCCTCTTCCCTCTAATGGT--A-CC 57
Query 176 TC-AG-A---TCCAA---TCA-AACCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAA 226
|| | | | || ||| | ||||| ||||||||||| ||| |||||||||||||
Sbjct 58 TCTTGTACTGTTAAACCCTCAGATCCCATTAAACCAGTGATTAAGCTTTTGGAGGAAGAA 117
Query 227 GCAAAACCCAAATCTGAGAAACTGAATCaagaagaagaagaagaagaagt-tgtggtgat 285
|| |||| |||||||||||||||| || ||||||||||||| | |||||||
Sbjct 118 ACAGAACCAAAATCTGAGAAACTGATTC---------AAGAAGAAGAAGTCT-TGGTGAT 167
Query 286 aaaacacacaagaagccatgaagagagatccaagaagaCAGAATCAGATAAAGATTCTCC 345
|||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 168 AAAACACAGAATAAGCCATGAAGAGAGTTCCAAGAAGACTGAATCAGATAAAGATTCTCC 227
Query 346 AGTTTCTTCTCCTGTGGCGGCTGAGAAATCGAATTCTACACCGCTTGTGAGAATCTCTAG 405
| || |||||||||| |||||||||||||| | ||||||||||| ||
Sbjct 228 -G-----------GT---GGCTGAGAAACCGAATTCTACACCGGTCGTGAGAATCTCGAG 272
Query 406 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAA 332
Query 466 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTCTAAA-AGAAGCTTTGATTTTGACCAGA 524
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 333 CTCTGCTGCTAAAACAAGAAGATACTCTGGTTC-AAAGAGAAGTTTTGATTTTGACCAGA 391
Query 525 ACGAGAGAATCCGCGGCGGCGATGCGGCGGAGGA-AGA--CGGAATGCAGCGAAATCGTC 581
|||||||||| |||||||||||| ||| |||||| ||| ||||||| |||| |||||||
Sbjct 392 ACGAGAGAATTCGCGGCGGCGATACGGAGGAGGAGAGAGACGGAATGGAGCGGAATCGTC 451
Query 582 ACCGTGGAGTAGAGAGAGTGCATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGTA 641
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 452 ACCGTGGAGTAGAGAGAGTTAATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGCA 511
Query 642 GAGAAAGAGAAAGATCGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTA 701
||||||||||| ||||||||||||||||||||||||||| ||| || || || |||||||
Sbjct 512 GAGAAAGAGAACGATCGGGAAGCAGAGAAAGAGGAAATGGCGGTGGCGGTGGTGGTGGTA 571
Query 702 GTAGGAGAGTGAGTAGATCTCCGGCGAAACGTTCTGAGATTCGTAACGCTGATTCGTGTG 761
||||| ||||||||||||||||||||||||| || ||| ||| |||||| |||||||||
Sbjct 572 GTAGGCGAGTGAGTAGATCTCCGGCGAAACGATCAGAGGTTCCAAACGCTAATTCGTGTG 631
Query 762 GCAGTTCGGTAAATTCGAGTAATAATAGACCGGGAAAGTTTGTTACGATTCCTGCAACGG 821
| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 632 GTAGTTCGGTAAATTCGAGTAATAGTAGACCGGGAAAGTTTGTTACGATTCCGGCGACGG 691
Query 822 ATAAGAGTAACAATGTAGAGCCGTTAGTAAAACGGATTACGGTTAAGAGAAACATCGGAG 881
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 692 ATAAGAGTAACAAAGTAGAGCCGTTGGTAAAACGAATTACGGTTAAGAGAAACATCGGAG 751
Query 882 ACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAATG 941
||||||| ||| | || ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 752 ACGCTTGTAGAGTTGCAGCGTCTCCGAGATCAAAGTCTCCGGCAAGAGCGGGGAATAATG 811
Query 942 TTCCCTCGCTAAGCCGGAGTAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAAATC 1001
||||||||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||
Sbjct 812 TTCCCTCGCTAAGCCGGAGCAATTCAAGAAAGGCGGAGCAATCACCGTATAGGAGGAATC 871
Query 1002 CATTGGGAGAGATTGATCAAAACAC-T--AA-G----A------A-------GA---TGA 1037
|||| |||||||||||||||||| | | || | | | || |||
Sbjct 872 CATTAGGAGAGATTGATCAAAACTCGTCGAAAGCTGGATCTTGTAACACTAAGAAGATGA 931
Query 1038 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGGTCCAAGCCCGAGTCGTGTTGCTG 1097
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
Sbjct 932 TAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGCTCCAAGCCCAAGTCGTGCCGCGG 991
Query 1098 TTGTAGAACTTACGAAAGCTCCTCAAGTTGTGTTAAGCAGAAGCAGATCGTTGAGGAAAT 1157
||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct 992 TTGTAGAACTTACAAAACCTCCTCAAGTTGTATTAAGCAGAAGCAGATCGTTAAGGAAAT 1051
Query 1158 CTCGAGATTTCGATTTGGTATCAAACGAGGATAACAATTACACTGCATTGTTGTTGAAAG 1217
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1052 CGCGAGATTTCGATTTGGTATCAAACGAAGATAACAATTACACTGCATTGTTGTTGAAAG 1111
Query 1218 ATATTCAGAGTTTTCATGGGAAGAGTGTTGATGATAGCGTGATTTCGCTGCCATTGTGTG 1277
| ||||||| |||||||||||||||||| ||||||| | |||||||||||| || ||||
Sbjct 1112 ACATTCAGAATTTTCATGGGAAGAGTGTCGATGATAACACGATTTCGCTGCCTTTATGTG 1171
Query 1278 TTAGTAAAGCTTGTTCAATTGTTGAAGCAGTGGCTGATCTTAACTCTATGACGAACAGA- 1336
||| |||||||||||| |||||||||||||| |||||||| ||||||||||| |||| |
Sbjct 1172 TTACTAAAGCTTGTTCCATTGTTGAAGCAGTAGCTGATCTCAACTCTATGACCAACA-AC 1230
Query 1337 ACTTGTTTGAGGTCTGATTCGAGCCGGTTTAGATTCACATCGACGGTGAAGAAAGCCGAT 1396
||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1231 ACTTGTTTGAGCTCTGATTCGAGCCGGTTTAGATTCACATCGACCGCAAAGAAAGCGGAT 1290
Query 1397 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGTGGTTCGTTGGAG 1456
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1291 CTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGT--T-CGTTGGAT 1347
Query 1457 GAATCATCTG 1466
||||||||||
Sbjct 1348 GAATCATCTG 1357
> Ahg493700 jgi|Araly1|493700|fgenesh2_kg.7__3133__AT5G37010.1
Length=1958
Score = 130 bits (70), Expect = 3e-29
Identities = 331/446 (74%), Gaps = 61/446 (14%)
Strand=Plus/Plus
Query 608 TCGCCTCGTGAACGGAGAAGACGAACTCCGAGTAGAGA-A---A-GA---GAA-AG--AT 656
|||||||| ||||||||||||||||||||||||||||| | | || ||| || ||
Sbjct 582 TCGCCTCGGGAACGGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTTAT 641
Query 657 ----CGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTAGTAGGA-GAGT 711
||||||| ||||| ||||||| || || ||| || ||||||||||| | | ||
Sbjct 642 AGATCGGGAAGTAGAGAGAGAGGAA--GT-GGTAATGGTGGTGGTGGTAGTAG-ACGGGT 697
Query 712 GAGTAGATCTCCGGCGAA-ACGTTCTGAGATTCGTAACGCTGATTCGTGTGGCAGTTCGG 770
|||||||||||||| ||| | | || ||||| ||| || |||| |||||| ||| |
Sbjct 698 GAGTAGATCTCCGG-GAAGAAGATCGGAGATA---AACCCTAATTCCAGTGGCAATTCTG 753
Query 771 TAAATTCGAGTAATAATAGACC-GGGAAAGTTTGT-TAC-GATTCCTGCAACGGATAAG- 826
| ||||||||||| |||||||| |||||| ||||| | | | |||||||||| ||||||
Sbjct 754 TGAATTCGAGTAACAATAGACCTGGGAAA-TTTGTAT-CTG-TTCCTGCAACAGATAAGG 810
Query 827 ----A-GTAACAATGTAGA-GCCGT-TAGTAAAACGGATTACGGTTAAGAGAAACATCGG 879
| ||||||||| ||| | | | || ||||||||||| || ||||||||| |
Sbjct 811 CTTTAAGTAACAATGGAGATGGA-TCT-GTGAAACGGATTACTGTGAAGAGAAAC---G- 864
Query 880 AGACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAA 939
||| | || ||| |||||||||||||| | || ||||| ||||||| || | |
Sbjct 865 ------TTGGA-AA-AGCTGCGTCTCCGAGGTCTCAGTCACCGGCGAGAGCGGCGAGTCA 916
Query 940 TGTTCCCTCGCTAAGCCGGAG-TAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAA 998
| || |||| | || || | | | |||| |||| || ||||| ||||| || |
Sbjct 917 -G--CCTTCGCC--GTCGAAGCTTAGCCG-GAAAA-CGGAGCATTCTCCGTATAGGAGGA 969
Query 999 ATCCATTGGGAGAGATTGATCAAAAC 1024
|||||||||| |||||||||| ||||
Sbjct 970 ATCCATTGGGTGAGATTGATCCAAAC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5