BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65720.1

Length=815
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475676 jgi|Araly1|475676|fgenesh2_kg.2__806__AT1G65720.1          961    0.0  


> Ahg475676 jgi|Araly1|475676|fgenesh2_kg.2__806__AT1G65720.1
Length=676

 Score =  961 bits (520),  Expect = 0.0
 Identities = 590/623 (95%), Gaps = 7/623 (1%)
 Strand=Plus/Plus

Query  1    TTGGGTTAGGTTTGTCTTCAAAATCGTCagaagaagaagaagaagTCAAAGACGATAACA  60
            |||||||||||||||||||||||   |||| |||||||||| ||||||||||||||||||
Sbjct  1    TTGGGTTAGGTTTGTCTTCAAAA---TCAGCAGAAGAAGAAAAAGTCAAAGACGATAACA  57

Query  61   ATGACGTCATCATCGTACCTCCGATTTGCGATCGCCGTCGTAGCTTTCCTCTCAATCACC  120
            ||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  58   ATGGCGTCATCCTCTTACCTCCGATTTGCGATCGCCGTCATAGCTTTCCTCTCAATCACC  117

Query  121  ACCATCACCACCGCACGTCCTTGCAAAACCTTCCTAATCTCCTCATATTCCCTCTCAATA  180
            |||||| ||  |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  118  ACCATCTCCGTCGCACGTCCTTGCAAAACCTTCCTCATCTCCTCTTATTCCCTCTCAATA  177

Query  181  ACCCCAGAAAACCCTAACCTCGAATCCGATTTCACCTCCACACGATTCGTCACCGTTTTC  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  178  ACCCCAGAAAACCCTAACCTCGAATCCGATTTCACCTCCACTCGATTCGTCACCGTTTTC  237

Query  241  ACAATCCGTCGTCTAAATCCTCACCACGTGGTTCCTTTCTTCGTCAATCGTCGTCACGAG  300
            |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  238  ACAATCCGCCGTCTAAATCCTCACCACATCGTTCCTTTCTTCGTCAATCGTCGTCACGAG  297

Query  301  AAGCCACAGATCCAATCGGATCGTTCCCTCCCTTTGATCTCTGATAACATCAATTCGTTT  360
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  298  AAGCCACAGATCCAATCGGATCGTTCCCTCCCTTTGATCTCTGAGAATATCAATTCGTTT  357

Query  361  AGAGATCGAACCAGAGATATTCTTAGCGTCGTCGTCGCGCTTTTGTTCGGTGTTGGTTGT  420
            ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct  358  AGAGATCGAACGAGAGATATTCTCAGCGTCGTCGTCGCTCTGTTGTTCGGTGTTGGTTGT  417

Query  421  GGTGCTTTAACCGCTGCTACTATGTATCTTGTTTGGGCTCTTGTTGTGAATCGTCAAAGC  480
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GGTGCTTTAACAGCTGCTACTATGTATCTTGTTTGGGCTCTTGTTGTGAATCGTCAAAGC  477

Query  481  TATGATTTTGAGGAAGAAGAAGATGATTATGAGAATGATGAATCTGATGCTGCTAGCTTG  540
            |||||||||   || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  TATGATTTT---GATGAAGAAGATGATTATGAGAATGATGAATCTGATGCTGCTAGCTTG  534

Query  541  AAGAAATTGGGTTATGTTAAGATTCCAGCTCCAGCTCCTGCTCCTGTGAAGGAAGCTGCT  600
            |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct  535  AAGAAATTGGGTTATGTTAAGATTCCAGCTCCAGCTCCAGCTCCGGTGAAGGAATCTGCT  594

Query  601  TGATTTGAGGTTGTGAATT-TCA  622
            ||||||||||||||||||| |||
Sbjct  595  TGATTTGAGGTTGTGAATTATCA  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30117104430


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5