BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65730.1
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475677 jgi|Araly1|475677|fgenesh2_kg.2__807__AT1G65730.1 3258 0.0
> Ahg475677 jgi|Araly1|475677|fgenesh2_kg.2__807__AT1G65730.1
Length=2329
Score = 3258 bits (1764), Expect = 0.0
Identities = 2132/2307 (92%), Gaps = 36/2307 (2%)
Strand=Plus/Plus
Query 1 GAATCATTCAGTTACAAGAAAATCGtcctcttctctcgccgatctcttctcttcagatcc 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 GAATCATTCAGTTATAAGAAAATCGTCCTCTTCTCTCGCCGATTTCTTCTCTTCAGATTC 60
Query 61 tctcctctataaaatctctccctctctcgttc-ccctcctcagatctgactcAAAT-CAA 118
||||||||||||||||||| |||||||| || | | |||||||||| || ||| ||
Sbjct 61 TCTCCTCTATAAAATCTCT--CTCTCTCG-TCACACAATTCAGATCTGATTC-AATGGAA 116
Query 119 ATCAAAAACTCTCAGCTATGGAAGTCGAACGATCGAAGAAAGACGACGATCTAAACAATG 178
| || || | | | | ||| || |||||| | | | || | | | |||||||
Sbjct 117 GTGGAACAC-C-GATCCAAAAAAGACG-ACGATCTCA-ACA-AC-A--A-C--AACAATG 165
Query 179 GATCTAAATCCAAC---GAAGAAGAAGAAATCTCCGTGGAGAGAATCTTCGAAGAGAGTA 235
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 166 GATCTAAATCCAACGAAGAAGAAGAAGAAATCTCCGTCGAGAGAATCTTCGAAGCGAGTC 225
Query 236 ACGAAATCCCACCGCCGTGGCAAAAACAGCTCACGTTCAGAGCTCTAATCGTGAGTTTCA 295
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 226 ACGAAATCCCACCGCCGTGGCAAAAACAGCTCACGTTTAGAGCTCTAATCGTGAGTTTTA 285
Query 296 TACTCGCGATTCTCTTTACCTTTGTGGTGATGAAACTGAATCTAACGACTGGGATTATTC 355
||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 TACTCGCGATTCTGTTTACGTTTGTGGTGATGAAATTGAATCTAACGACTGGGATTATTC 345
Query 356 CGTCGCTGAATATCTCCGCCGGTTTGCTTGGTTTCTTCTTTGTTAAAAGTTGGACTAAGA 415
||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 346 CGTCGCTTAATATCTCCGCCGGTTTACTTGGTTTCTTCTTCGTTAAAACTTGGACTAAGA 405
Query 416 TTCTTAATAAAGCTGGTTTTCTTAAACAACCGTTTACACGGCAAGAGAATACTGTGATTC 475
||||||||||||||||||||||||||||||||||||| || ||||| || || || ||||
Sbjct 406 TTCTTAATAAAGCTGGTTTTCTTAAACAACCGTTTACTCGTCAAGAAAACACCGTTATTC 465
Query 476 AGACTTGTGTCGTCGCCTCCTCCGGCATCGCCTTTAGCGGTGGGTTTGGTAGTTATCTGT 535
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 466 AGACTTGTGTCGTCGCTTCCTCCGGCATCGCTTTTAGCGGTGGGTTTGGTAGTTATCTGT 525
Query 536 TTGGAATGAGTGATGTTGTTGCTAAACAATCTGCGGAAGCCAATACTCCGTTGAACATAA 595
|||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 526 TTGGAATGAGTGATATTGTTGCTAAACAATCTGCGGAAGCTAATACTCCGATGAACATAA 585
Query 596 AGAATCCACATTTGGGTTGGATGATAGGATTTCTCTTTGTCGTTAGCTTTCTTGGTCTTT 655
||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 586 AGAATCCTCATTTGGGTTGGATGATTGGATTTCTCTTCGTTGTTAGCTTTCTTGGTCTTT 645
Query 656 TCTCCGTCGTTCCTCTTCGAAAGATCATGATCGTGGACTTCAAATTGACATATCCTAGTG 715
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 646 TCTCTGTCGTTCCTCTTCGAAAGATCATGATTGTGGACTTCAAATTGACATATCCTAGTG 705
Query 716 GTACTGCCACTGCCCATCTCATTAACAGCTTCCACACACCTCAAGGTGCCAAACTCGCAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTACTGCCACTGCCCATCTCATTAACAGCTTCCACACACCTCAAGGTGCCAAACTCGCAA 765
Query 776 AGAAGCAAGTCAGAGCATTGGGCAAGTTCTTCTCATTCAGTTTCTTATGGGGTTTCTTTC 835
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 766 AGAAGCAAGTCAGAGCATTGGGGAAGTTCTTTTCATTCAGTTTCTTGTGGGGTTTCTTTC 825
Query 836 AATGGTTCTTTGCTACTGGTGACGGTTGTGGTTTCGCCAACTTCCCTACATTTGGTCTCA 895
||||||||||| || ||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 826 AATGGTTCTTTACTTCTGGTGACGATTGTGGTTTTGCTAACTTCCCTACATTTGGTCTCA 885
Query 896 AAGCCTATGAAAACAAATTCTACTTTGATTTCTCTGCTACATATGTTGGTGTTGGAATGA 955
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AAGCATATGAAAACAAGTTCTACTTTGATTTCTCTGCTACATATGTTGGTGTTGGAATGA 945
Query 956 TTTGTCCATATCTTATCAATGTGTCTCTTCTCATCGGAGCAATTCTCTCATGGGGTGTTA 1015
|||| || |||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 946 TTTGCCCGTATCTTATCAATGTATCTCTTCTCATTGGATCAATTCTCTCATGGGGTGTTA 1005
Query 1016 TGTGGCCTCTCATTGGTGCCCAAAAAGGCAAATGGTATGCTGCTGATCTCTCA-TCAACC 1074
|||||||||||||||||||||||||||||||||||||| |||||||||| | | |||| |
Sbjct 1006 TGTGGCCTCTCATTGGTGCCCAAAAAGGCAAATGGTATTCTGCTGATCT-TAAATCAAGC 1064
Query 1075 AGTCTCCATGGTCTTCAAGGCTACAGGGTGTTTATAGCCATAGCTATGATCCTCGGTGAT 1134
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1065 AGTCTCCATGGTCTTCAAGGCTATAAGGTGTTTATAGCCATAGCTATGATCCTCGGTGAT 1124
Query 1135 GGTCTCTACAACTTCATCAAAGTCTTAGGCCGCACTGTCTTCGGTCTATACAAGCAATTC 1194
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GGTCTTTACAACTTCATCAAAGTCTTAGGCCGCACTGTCTTCGGTCTATACAAGCAATTC 1184
Query 1195 AAGAACAAAGATGTTCTTCCTATCAACGACCATACATCAACAGCCCCTGTAACCATTTCC 1254
||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||
Sbjct 1185 AAGAACAAAGATGTTCTTCCTGTCAACGACCGTTCATCACCAGCCACTGTAACCATTTCT 1244
Query 1255 TACGACGACAAAAGAAGAACAGAGCTTTTCCTCAAAGACAGAATCCCATCATGGTTTGCT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TACGACGACAAAAGAAGAACAGAGCTTTTCCTCAAAGACAGAATCCCATCATGGTTTGCT 1304
Query 1315 GTAACCGGTTACGTAGT-ATTGGCTATAGTCTCAATCATCACAGTTCCACATATCTTCCA 1373
||||| ||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1305 GTAACTGGTTACGTAGTCAT-GGCTATAGTCTCAATCATCACCGTTCCACACATCTTCCA 1363
Query 1374 TCAGCTAAAATGGTACCACATTTTGATCATGTACATAATCGCCCCTGTCTTAGCCTTTTG 1433
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1364 TCAGCTCCAATGGTACCACATTTTGACCATGTACATAATCGCCCCTGTCTTAGCCTTTTG 1423
Query 1434 CAACGCCTACGGTTGCGGACTCACTGACTGGTCCTTAGCTTCCACTTATGGAAAACTCGC 1493
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1424 CAATGCCTACGGTTGCGGACTCACTGATTGGTCCTTAGCTTCCACTTATGGAAAACTCGC 1483
Query 1494 CATTTTCACCATCGGAGCCTGGGCTGGTGCATCTAACGGAGGCGTCTTAGCTGGACTTGC 1553
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 1484 TATTTTCACCATCGGAGCCTGGGCTGGTGCAGCCAATGGAGGCGTCTTAGCTGGACTTGC 1543
Query 1554 AGCTTGTGGTGTCATGATGAACATTGTCTCAACAGCTTCTGATCTTATGCAAGATTTCAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AGCTTGTGGTGTCATGATGAACATTGTCTCAACAGCTTCTGATCTTATGCAAGATTTCAA 1603
Query 1614 AACCGGTTACATGACATTAGCCTCACCAAGATCAATGTTCTTGAGCCAAGCCATTGGAAC 1673
||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||
Sbjct 1604 AACCGGTTACATGACATTAGCCTCACCGAGATCAATGTTCCTAAGCCAAGCGATTGGAAC 1663
Query 1674 CGCCATGGGATGTGTGATCTCTCCTTGCGTCTTCTGGCTATTCTACAAGGCGTTCCCTGA 1733
|||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1664 TGCCATGGGCTGTGTGATATCTCCTTGCGTCTTCTGGCTATTCTACAAAGCCTTCCCCGA 1723
Query 1734 CTTTGGCCAACCCGGGACCGCCTATCCCGCTCCATACGCCTTAGTCTACAGAAACATGTC 1793
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 CTTTGGCCAAACCGGGACCGCCTATCCCGCTCCATACGCCTTAGTCTACAGAAACATGTC 1783
Query 1794 TATACTCGGAGT-CGAAGGATTCTCTGCTTTGCCCAAACATTGCCTCATGCTCTGCTACA 1852
|||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1784 TATACTTGGAGTTC-AAGGATTCTCTGCTTTGCCCAAACACTGCCTCATGCTCTGCTATA 1842
Query 1853 TATTCTTCGCAGCAGCAGTGATCGTAAACGGTATAAGGGATGCCCTTGGGCCAAAGTGGG 1912
||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||
Sbjct 1843 TATTCTTCGCAGCAGCAGTGATCGTCAACGGTGTAAGGGATGCCGTGGGGCCAAAGTGGG 1902
Query 1913 CTCGGTTTATCCCGCTCCCAATGGCTATGGCTATACCCTTCTACCTTGGAGGTTACTTCA 1972
||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 1903 CTCGGTTTATCCCCCTCCCGATGGCTATGGCTATACCTTTCTACATTGGAGGTTACTTCA 1962
Query 1973 CAATAGATATGTGTCTGGGAAGTCTCATACTGTTCATCTGGAGGAAGCTGAATAAACCAA 2032
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1963 CAATAGATATGTGTGTGGGAAGTCTCATATTGTTCATCTGGAGGAAGCTGAATAAACCAA 2022
Query 2033 AGGCCGATGCGTACTCTTCTGCTGTTGCTTCTGGTTTGATCTGTGGTGAAGGTATTTGGA 2092
||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct 2023 AGGCCGATGCGTACTCTTCGGCCGTTGCTTCAGGTTTGATCTGCGGTGAAGGTATTTGGA 2082
Query 2093 CGTTACCAAGCTCTATCCTTGCCTTGGCTGGTGTCAAGGCTCCTATTTGCATGAAGTTCT 2152
| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2083 CTTTACCAAGCTCTATACTTGCCTTGGCTGGTGTTAAGCCTCCTATTTGCATGAAGTTCT 2142
Query 2153 TGTCCA-TGGCTTCCAACAACAAGGTTGATGCCTTCTTAAACCCTTCTTAACATTCtttt 2211
|||||| || | ||||| ||||||||| || |||||||| ||||||| |||| |
Sbjct 2143 TGTCCACTG-CGGCCAACTTGAAGGTTGATTCCCTCTTAAACGCTTCTTAG--TTCTCAT 2199
Query 2212 ttttttttttagagtttggtttttaattttctacgtttctttgtctagttttaattggct 2271
||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2200 TTTTTTT---AGAGTTTGGTTTTTAATTTTTTACGTTTGT--GTCTAGTTTTAATTGGCT 2254
Query 2272 ttttaGGTCCTCATGTGTCTGT-CTTT 2297
|||||||||||| | ||||| | ||||
Sbjct 2255 TTTTAGGTCCTCCTCTGTCTTTTCTTT 2281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89321624525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5