BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65810.1
Length=3153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908040 jgi|Araly1|908040|Al_scaffold_0002_1121 4438 0.0
Ahg947346 jgi|Araly1|947346|scaffold_703575.1 113 7e-24
> Ahg908040 jgi|Araly1|908040|Al_scaffold_0002_1121
Length=3177
Score = 4438 bits (2403), Expect = 0.0
Identities = 2930/3181 (92%), Gaps = 50/3181 (2%)
Strand=Plus/Plus
Query 10 TTATGGGTAGCAAAAGAAACCAAGAAGAAGGAAAAAATCATCAAAGGAAGAGATTTAGTC 69
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 10 TTATGGGTATCAAAAGAAACCAAGAAGAAGGAAAGAATCATCAAAGGAAGAGATTTAGTC 69
Query 70 GATGTTGTCTTCTCTTGGTCTCTTCGTGATGTGTTAAACTCAAATCTATACAGAGGACAG 129
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| ||
Sbjct 70 GATGTTGTCTTCTCTTGGTCTCTTCGTGATGTGTTAAGCTCAAATCTTTACAAAGGAAAG 129
Query 130 GTAGGGAAGATTCCTAACACATTCACATCAACCAAAGAGTATTTTGAGTCATTTGTTAAA 189
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 GTAGGGAAGATTCCTAACACATTTACATCAACCAAAGAGTATTTTGAGTCATTTGTTAAT 189
Query 190 CCGATTATTGAAGAGACACATGCTGATTTGTTGTCAAGTATGGGAACGATACGTCGTGCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CCGATTATTGAAGAGACACATGCTGATTTGTTGTCAAGTATGGGAACGATACGTCGTGCA 249
Query 250 CAAGCTTTTAAGTTTTGGGAAATCAAGCCAGGGAAAGATTTTAAACCTCCTAGGGATCTT 309
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 250 CAAGCTTTCAAGTTTTGGGAAATCAAGCCAGGGAAAGATTTTAAACCTCCTAAGGATCTT 309
Query 310 TATTATGAGGTTACTTTGCAGATGACAAATGAGT-ATATGACCAAAGGAGGTCAAAATCT 368
|||||||||||||||||||||||| ||||| | || || |||| ||||||||||||||
Sbjct 310 TATTATGAGGTTACTTTGCAGATGGTGAATGA-TAATGTGGCCAATGGAGGTCAAAATCT 368
Query 369 GTTAGAGGTTAATGATCTTATTGCAGTGACCGATAAGAGGCCTATTCGAATCGATGACTT 428
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 GCTAGAGTTTAATGATCTTATTGCAGTGACAGATAAGAGGCCTATTCGAATCGATGACTT 428
Query 429 GAGATTTTCTC-ATGAGCCTTATTTGCTAGCTCTTGTTTGTGGAGTGAATGAAAATAATC 487
||||| ||| | |||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 429 GAGATGTTC-CAATGAGCCTCATTTGCTAGCTCTTGTTTGTGGGGTTAATGAAAATAATC 487
Query 488 CACATTTGATAACTATTTTGGCTTCTAAGCCAATTATTTTCGACGATGATGACGATATA- 546
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
Sbjct 488 CACATTTGATAACTATTTTGGCTTCTAAACCTATTATTTTCGAGGATGATGACGATA-AG 546
Query 547 AAAACGTCGTCGAAGAGAGGAAAGGGTGAGAGGAAAAGCTTAAGTTTCTTTGGGGTTAAT 606
||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 547 CGAACGTCGACAAAGAGAGGAAAGGGTGAGAGGAAACGCTTAAGTTTCTTTGGGGTTAAT 606
Query 607 TTGATCAACATGATGACAAATATTCGTATTTGGA-CTGCGTTGCATCCAAACCCCGAAGG 665
|||||||||||||||||||||||||||||||||| | |||||||||||| | || |||||
Sbjct 607 TTGATCAACATGATGACAAATATTCGTATTTGGAGC-GCGTTGCATCCACATCCAGAAGG 665
Query 666 AGGAAACTTGAAGCTTATTTCAAGAGTACTTCAAAGCAACAATGAGGTTGATGGAGGAAG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGGAAACTTGAAGCTTATTTCAAGAGTACTTCAAAGCAACAATGAGGTTGATGGAGGAAG 725
Query 726 TTGTGTTTCTTGTAAAGAAAACAGTGAGAGTGTAGTCTCAGATTACTCAGCTCGAATGCT 785
||||||| ||||||||||||||||||||| |||||| |||||| ||||||| || |||||
Sbjct 726 TTGTGTTGCTTGTAAAGAAAACAGTGAGAATGTAGTGTCAGATCACTCAGCGCGGATGCT 785
Query 786 ACGTTCATTTAAACTGAATTCATCTCAAGAGGACGCGATTTT-ACGTTGTCTTGAAGCTA 844
||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |||||||
Sbjct 786 ACGTTCATTCAAACTGAATTCATCTCAAGAGGATGCGATTTTGA-GTTGTCTAGAAGCTA 844
Query 845 AAAGTTG-TAACCATTCCAACAATATCAAACTTATTTGGGGACCACCGGGCACAGGGAAG 903
||||||| | |||| |||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 845 AAAGTTGCT-ACCACTCCAACAATATCAAACTTATATGGGGACCCCCGGGCACGGGGAAG 903
Query 904 ACGAAAACAACAAGTGTTCTGCTTTTGAACTTTCTGAAAATGAGATGCAGGACATTGACT 963
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 904 ACGAAAACAACAAGTGTTCTGCTTTTGAACCTTCTGAAAATGAGATGCAGGACATTGACT 963
Query 964 TGTGCTCCAACTAACATAGCTGTTTTGGAAGTTTGTTCAAGGCTTGTGAAATTAGTCTCT 1023
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 TGTGCTCCAACTAACATAGCTGTTTTGGAAGTTTGTTCAAGACTTGTGAAATTAGTCTCT 1023
Query 1024 GAGTCTTTGAGGTTTGATGGGTATGGTCTCGGAGATATAGTGTTGTTTGGCAATAAAGAA 1083
||||| |||||||||| ||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 1024 GAGTCATTGAGGTTTGGTGGTTATGGTCTTGGAGATATTGTGTTGTTTGGTAATAAAGAA 1083
Query 1084 AGGATGAAAATCGATGATCGCGAAGATCTTTTCGATGTCTTCCTTGAGTACCGAGTTGAT 1143
||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1084 AGGATGAAAATCGATGACCGGGAAGATCTTTTCGATGTCTTCCTTGAGTACAGAGTTGAG 1143
Query 1144 GAGCTTTATAGATGTTTTATGGCTCTGACTGGATGGAGAGCAAATGTAAACCGTATGATC 1203
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1144 GAGCTTTATAGATGCTTTATGGCTATGACTGGATGGAGAGCAAATGTTAACCGTATGATC 1203
Query 1204 TGTTTGCTCAGTGATCCGAAAC-ACGAGTTTCGCCAATTCAAATCCGTAAATACAACACT 1262
|||||||||||||||||| ||| | |||| ||| || ||||| |||||||||| ||||
Sbjct 1204 TGTTTGCTCAGTGATCCGCAACGA-GAGTATCGTCAGTTCAATTCCGTAAATAAAACAAG 1262
Query 1263 TCTCTCGTTTAAGGATTTTGTGGAGGAGAGGCTTAGTAGACTAAGATATGATCTGCATCA 1322
||| || |||||||| ||||||||||||||||| || ||||||||| ||||||| || ||
Sbjct 1263 TCTTTCTTTTAAGGAATTTGTGGAGGAGAGGCTGAGCAGACTAAGAAATGATCTACAGCA 1322
Query 1323 TCAGTTTACAACTTTGTGTCTCCATTTACCAACTTCTTTGCTCTCCTTTAGGGTGGCGGA 1382
||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 1323 TCAGTTTACAACTTTGTGTCTTCATTTACCAACTACTTTGCTCTCCTTTCGGGTGGCGGA 1382
Query 1383 AAAGATGAACCAGACTAATAATCTCCTTAGAAACATCGCGGCTTCTGATGTCAT--GAGA 1440
||| ||||| ||||||||| ||||||||||| |||| ||| ||||||||| || ||||
Sbjct 1383 AAAAATGAATCAGACTAATGATCTCCTTAGAGACATTTCGGTTTCTGATGTTATGGGAGA 1442
Query 1441 --G-ATG--G---T-T-ATGGAAGAATGAAATATAAGCTTAAAGATA-C--TG--G--TG 1483
| | | | | | ||||||||| ||||||||| | |||||||| | || | |
Sbjct 1443 TGGTAAGAAGTCTTGTCATGGAAGAAGGAAATATAACCGTAAAGATACCGGTGACGAAAG 1502
Query 1484 A-T-GAAAATGATTCAAGA-ACGCAAGATTGTTTGGAGATGTTGACATCGATTTCTATGA 1540
| | || |||||||||||| | |||||||||| || |||||||||||||||||||||| |
Sbjct 1503 ATTGGAGAATGATTCAAGAGA-GCAAGATTGTCTGAAGATGTTGACATCGATTTCTATAA 1561
Query 1541 GTATCAAACTTCCGGATTTTATATCCAAGTTCGAACTTCAAAA-ACTCTGCTTAGATAAT 1599
||||||| ||||||||||||||||| ||||| |||||| |||| |||||||||||| |||
Sbjct 1562 GTATCAATCTTCCGGATTTTATATCAAAGTTTGAACTT-AAAATACTCTGCTTAGACAAT 1620
Query 1600 GCATATCTG-TTGTTTTGCACAGCATCAAGCTCTGCTAGGTTACACATGAGTAGTCCAAT 1658
||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1621 GCATATCTGCTT-TTCTGCACAGCATCAAGCTCTGCTAAGTTACACATGAGTAGTCCAAT 1679
Query 1659 ACAGCTTCTTGTGATTGATGAAGCTGCTCAGTTAAAAGAATGCGAGTCAGCGATACCATT 1718
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1680 ACAGCTTCTTGTGATTGACGAAGCTGCTCAGTTAAAAGAATGCGAATCAGCGATACCTTT 1739
Query 1719 GCAGCTTCGAGGACTTCAACATGCGATTTTGATCGGTGATGAGAAGCAATTGCCTGCAAT 1778
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GCAGCTTCCAGGACTTCAAAACGCGATTTTGATCGGTGATGAGAAGCAATTGCCTGCAAT 1799
Query 1779 GATAAAAAGCAATATTGCTTCAGAGGCTGATCTTGGGAGGAGTTTGTTCGAAAGATTGGT 1838
||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1800 GATTAAAAGCAAGATTGCTTCAGAAGCTGATCTTGGGAGGAGTTTGTTTGAAAGATTGGT 1859
Query 1839 GTTGTTGGGACATAATAAACAGTTGCTGAACATGCAGTACCGAATGCATCCTTCGATTAG 1898
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1860 GTTGTTGGGGCATAATAAACAGTTGCTGAACATGCAATACCGAATGCATCCGTCGATTAG 1919
Query 1899 TATTTTCCCGAACAGAGAGTTTTACGATATGAAGATTTTGGATGCTCCTTCTGTGAGACT 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TATTTTCCCGAACAGAGAGTTTTACGATATGAAGATTTTGGATGCTCCTTCTGTGAGACT 1979
Query 1959 GAGAAGTTATGaaaaaaaGTTTCTTCCTGAGAAAATGTATGGACCTTACTCTTTTATCAA 2018
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1980 GAGAAGTTATGAGAAAAAGTTTCTTCCTGAGAAAATGTTTGGACCTTACTCTTTCATCAA 2039
Query 2019 CATAGCTTATGGAAGAGAACAGTTTGGTGAAGGATATAGTTCGAAAAACCTAGTGGAAGT 2078
|||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 2040 CATAGCATATGGAAGAGAACAGTTTGGAGAAGGATATAGTTCGAAAAACGTAGTGGAGGT 2099
Query 2079 CTCTGTTGTGGCTGAGATAGTCTCAAAGCTTTACTCAGTATCAAGAAAGACCGGG-AGAA 2137
||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||
Sbjct 2100 CTCTGTTGTGGCTGAGATAGTGTCAAAGCTTTATTCAGTATCAAGAAAGA-CGGGAAGAT 2158
Query 2138 CGATAAGCGTAGGGGTGATTTCACCTTACAAAGCTCAAGTGTTTGCGATCCAAGAAAGGA 2197
|||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2159 CGATCAGCGTAGGTGTTATTTCACCTTACAAAGCTCAAGTGTTTGCAATCCAAGAAAGGA 2218
Query 2198 TAGGCGAAAAGTATAATACCGAAGGGACATTTACAGTGAGTGTTAGGTCTGTAGATGGGT 2257
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2219 TAGGCGAAAAGTATAATACCGAAGGGACATTCACAGTGAGTGTTAGGTCCGTAGATGGGT 2278
Query 2258 TTCAAGGTGGTGAAGAAGATATCATTATAATCTCAACAGTCAGGTCTAACGGTAATGGAG 2317
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 2279 TTCAAGGCGGTGAAGAAGATATCATTATAATCTCAACTGTCAGGTCTAACGATAAAGGAG 2338
Query 2318 CTATTGGTTTTTTATCTAACCAACAAAGAACTAATGTAGCACTCACTCGTGCGAGGTATT 2377
| || |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2339 CAATCGGTTTTCTATCTAACCAACAACGAACTAATGTAGCACTCACTCGCGCGAGGTATT 2398
Query 2378 GCTTATGGATTCTTGGAAACGAAGCGACTTTAACGAACAATAGATCAGTGTGGAGACAGT 2437
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 2399 GCTTATGGATTCTTGGAAACGAGGCGACTTTAACGAACAATAAATCAGTGTGGAGGCAGT 2458
Query 2438 TGGTAGAT-GATGCGAAAGCACGAAACTGTTTCCATAATGCAGAAGAAGATGAATCATTA 2496
| |||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2459 TAGTAG-TCGATGCGCAAGCACGAAACTGTTTCCATGATGCAGAAGAAGATGAATCATTA 2517
Query 2497 GCTCAGTGTATTGAAAGATCAACAACAGCACTTGATGATCTTAATAAGCTTCAAAACAAG 2556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 GCTCAGTGTATTGAAAGATCAACAACAGCACTTGATGATCTTAATAAGCTTCAAAACAAG 2577
Query 2557 AAGCTTATTTCTTTTGAGAATTCGATATGGAAGGTTTGGCTCAGCTACGAGTTCTTGAAA 2616
||||||||||| || || ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 2578 AAGCTTATTTCCTTCGAAAATTCGATATGGAAGGTTTGGCTTAGCAATGAGTTCTTGAAA 2637
Query 2617 TCTCTGGAAACGATCGTAGACTCGGAAATTAATAAAAGAGTTATGAGCTTTTTGGAGAAG 2676
|||||||| |||||| ||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 2638 TCTCTGGAGACGATCATAGACTCTGAAATTAACAAAAGAGTTATGAACTTTTTGGAGAAG 2697
Query 2677 TTATCTAATGGGAAAGAGCT--T-CATCAAGAGGTTGAGTTTGAAAGTGAGAATTTGTTG 2733
|||||||||||||||||||| | || ||||||| |||| |||| |||||| || |||||
Sbjct 2698 TTATCTAATGGGAAAGAGCTGCTTCAACAAGAGGATGAGATTGAGAGTGAGTATCTGTTG 2757
Query 2734 AGACAACATGA-GTTTGATGATGGCTTAAGTCTTATTTGGGCGATAGATATTTTCAAGAA 2792
|||||||| || | |||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 2758 AGACAACA-GAAGATTGATGATGGCTTAAGCCTTATTTGGGCAATAGACATTTTCAAGAA 2816
Query 2793 TAATAATCAACATGTACAAGTTTTGAAGATCTGGCAGGTTTTGCCATCTACTGATGTTTC 2852
|||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2817 AAATAATTACCATGTCCAAGTTTTGAAGATCTGGCAGGTTTTGCCATCTTCTGATGTTTC 2876
Query 2853 TCGTGTTACAGAACATCTAGAGAAACATTACAGGCGATACACGAAAGGCAAGATAAGTCG 2912
||| | | |||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 2877 TCGCGCCATGGAACATCTAGAGAAACATTACAAGCGATACACGAAAGTCAAGATAAAACG 2936
Query 2913 GTGTCGATACATATGCTCTCAAGGTGATTTAGTTGTACCAATGCAATGGCCGGTTGATTC 2972
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2937 GTGTCGATACATATGCTCTCAAGGAGATTTAGTTGTACCAATGCGATGGCCGGTTGATTC 2996
Query 2973 CAATTCTTGTTCAAAGAAAGATATTGTAAGCGATGTTTCGAGATCATTTGCGTTGCTCAG 3032
||||||||||| |||||| || ||||||| ||| ||||| ||||||||||| ||||| ||
Sbjct 2997 CAATTCTTGTTTAAAGAAGGACATTGTAAACGACGTTTCAAGATCATTTGCATTGCTAAG 3056
Query 3033 TGTTGTGGAAGAGGAAACTGTGAGTCCTAAACCTATCAAGAAACAAGTGAAGCTAAAGAA 3092
||||||||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 3057 TGTTGTGGATGAAGAAACTGTGACTCCCAAACCAATCAAGAAACAAGTGAAGCTAAAGAA 3116
Query 3093 ACTGTGGAAGATTAGAAGAAAGGTTCAACTTTCAACATCTAACCCCAAAGATCCTAAGTG 3152
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3117 AGTGCGGAAGATTAGAAGAAAGGTTCAACTTTCAACATCTAACTCCAAAGATCCTAAGTG 3176
Query 3153 A 3153
|
Sbjct 3177 A 3177
> Ahg947346 jgi|Araly1|947346|scaffold_703575.1
Length=2500
Score = 113 bits (61), Expect = 7e-24
Identities = 539/764 (71%), Gaps = 56/764 (7%)
Strand=Plus/Plus
Query 1664 TTCTTGTGATTGATGAAGCTGCTCAG-TTAAAAGAATGCGAGTCAG-CGATACCATTGCA 1721
|||||||| |||| || || |||||| || || ||||| || |||| | | |||||||
Sbjct 1546 TTCTTGTGGTTGACGAGGCGGCTCAGCTT-AAGGAATGTGAATCAGTTGCT-GCATTGCA 1603
Query 1722 GCTTCGA-GGACTTCAACATGC-GATTTTGA-TCGGTGATGAGAAGCAATTGCCTGCAAT 1778
|||| | ||||| | ||||| | || | | | || |||||| || || ||||||||
Sbjct 1604 ACTTC-AGGGACTGCGTCATGCTG-TTCT-ACTAGGAGATGAGTTTCAGTTACCTGCAAT 1660
Query 1779 -GATAAAAAGCAAT-ATTGCTTCAGAGGCTGATCTT-GGGAGGAGTTTGTTCGAAAGATT 1835
| | | || | || | ||| | |||| || || || || || ||||| || |||||
Sbjct 1661 GGTTCATAA-CGATGAATGC-GAAAAGGC-GAAATTCGGAAGAAGCTTGTTTGAGAGATT 1717
Query 1836 GG-TGTTGTTGGGACATAATAAACAGTTGC-TGAACATGCAGTACCGAATGCATCCTTCG 1893
|| | || || |||| ||||| |||| || | | || || |||||||| ||||||
Sbjct 1718 GGTTACACTT-GGTCATAGCAAACACTTGCTTG-ATGTTCAATATCGAATGCACCCTTCG 1775
Query 1894 ATTAGTATTTTCCCGAACAGAGAGTTTTACGATATGAAG-ATTTTGGATGCTCCTTCTG- 1951
|||| || |||||| || | |||||| || | | | || || |||||| || ||
Sbjct 1776 ATTATTAGTTTCCCTAATAAAGAGTTCTATGGT-GGGAGAATCAAAGATGCTGCTAATGT 1834
Query 1952 T-GAGACTGAGAAGTTATGaaaaaaaG-TTTCTTCCTGAGAAA-ATGTATGG-ACCTTAC 2007
| ||| || | ||| | |||| | | ||||| | |||| |||| ||| |||| |
Sbjct 1835 TCAAGA--AAGCATTTACG-AAAAGCGATATCTTCAAG-GAAACATGTTTGGCTCCTT-C 1889
Query 2008 TCTTTTATCAACATAGCTTATGGAAGAGAACAGTTTGGTGAAGGATATAGTTCGAAAAAC 2067
|| |||||||| ||| | |||||| |||| |||||||||| || ||||| | || |||
Sbjct 1890 TCGTTTATCAATGTAGGTCATGGAAAAGAAGAGTTTGGTGATGGGCATAGTCCCAAGAAC 1949
Query 2068 CTAGTGGAAGTCT-CTGTTG-TGGCTGAGATAGTCTCAAAGCTTTACTCAGTATCAA--G 2123
| || ||||| | ||| || | |||| || | ||||| |||| | ||| |||| |
Sbjct 1950 ATGGTTGAAGT-TGCTG-TGATTTCTGAAATCCTATCAAATCTTTTCAAAGTTTCAAGTG 2007
Query 2124 AAAGACCGGGA-GAACGATAAGCGTAGGGGTGATTTCACCTTACAAAGCTCAAGTGTTTG 2182
||||| || || || || || || |||||| ||||||| |||| |||||| |
Sbjct 2008 AAAGA--AAGATTAA-TATGAGTGTTGGAGTGATTACACCTTATAAAGGACAAGTGAGAG 2064
Query 2183 CGATCCAAGAAAGGAT-AGGCGAAAAGTATAATACC-GA--AGG-GA-CATTT-ACAGTG 2235
| |||||||| || || | || ||||| | | || | ||| || | ||| ||| ||
Sbjct 2065 CAATCCAAGACAGAATCA-TAGATAAGTACAGTTCCTTATCAGGTGAGCTTTTCACATTG 2123
Query 2236 AGTGTTAGGTCTGTAGATGGGTTTCAAGGTGGTGAAGAAGATATCATTATAATCTCAACA 2295
| |||| |||| |||||||||||||||||||||||||||||| | || || ||||| ||
Sbjct 2124 AATGTTCGGTCGGTAGATGGGTTTCAAGGTGGTGAAGAAGATGTTATCATCATCTCCACC 2183
Query 2296 GTCAGGTCTAACGGTAAT-GGA-GCTATTGGTTTTTT-ATCTAACCAACAAAGAACTAAT 2352
|| || |||| |||| ||| | | | || ||| | | ||||| |||||| | ||
Sbjct 2184 GTTAGAAGTAACTGTAACAGGAAGGT-T-GGATTTCTCAG-TAACCGTCAAAGAGCCAAC 2240
Query 2353 GTAGCACTCACTCGTGCGAGGTATTGCTTATGGATTCTTGGAAA 2396
|| || |||||||| || || | || |||||| | |||||||
Sbjct 2241 GTGGCGCTCACTCGAGCTAGACACTGTTTATGGGTGATTGGAAA 2284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119108196115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5