BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65840.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925711 jgi|Araly1|925711|scaffold_201272.1 2453 0.0
Ahg925710 jgi|Araly1|925710|scaffold_201271.1 313 4e-84
> Ahg925711 jgi|Araly1|925711|scaffold_201272.1
Length=1534
Score = 2453 bits (1328), Expect = 0.0
Identities = 1453/1515 (96%), Gaps = 2/1515 (0%)
Strand=Plus/Plus
Query 376 TTTCCAACAAAATCTTCAATGGATAAGAAGAAGAATTCGTTTCCAGATAATCTTCCTGAA 435
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTTCCAACTAAATCTTCAATGGATAAGAAGAAGAATTCGTTTCCAGATAATCTTCCTGAA 62
Query 436 GGCACAATCTCTGAGCTTATGCAGAAGCAGAACAATGTGCAGCCTTCTGTTATTGTGATT 495
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 63 GGCACAATCTCTGAGATTATGCAGAAGCAGAACAATGTGCAGCCATCTGTTATTGTGATT 122
Query 496 GGTAGTGGTATATCAGGTCTTGCTGCTGCTAGGAATCTCTCTGAAGCATCTTTCAAGGTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 123 GGTAGTGGTATATCAGGTCTTGCTGCTGCTAGGAATCTCTCTGAAGCATCTTTTAAGGTG 182
Query 556 ACTGTTCTTGAATCACGCGATAGGATTGGTGGTCGTATCCATACGGATTATTCCTTTGGT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 183 ACTGTTCTTGAATCACGCGATAGGATTGGTGGTCGTATCCATACGGATTATTCGTTTGGC 242
Query 616 TGTCCTGTTGATATGGGAGCTTCATGGTTACATGGAGTCTCTGATGAGAATCCCTTAGCT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 243 TGTCCTGTTGATATGGGAGCTTCATGGTTACATGGAGTCTCTGATGAGAATCCATTGGCT 302
Query 676 CCCATTATACGCCGTTTAGGACTGACTTTATACCGAACTAGCGGGGATGACTCCATCTTG 735
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 303 CCCATTATACGCCGTCTAGGGCTGACTTTATACCGAACTAGCGGGGATGATTCCATCTTG 362
Query 736 TATGATCATGATCTGGAGAGTTATGGACTTTTTGACATGCATGGGAATAAAATTCCGCCG 795
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 363 TATGATCATGATCTGGAGAGTTATGGACTTTTCGACATGCGTGGGAATAAAATTCCGCCG 422
Query 796 CAGTTGGTTACTAAAGTTGGAGATGCATTCAAGAGAATTCTCGAAGAGACGGAGAAAATA 855
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CAGTTGGTCACTGAAGTTGGAGATGCATTCAAGAGAATTCTCGAAGAGACGGAGAAAATA 482
Query 856 AGGGATGAAACTGCCA-ATGACATGTCTGTTCTTCAAGGAATATCTATCGTCTTGGATAG 914
|||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 483 AGGGATGAAACT-ACAGATGACATGTCTGTTCTTCAAGGAATATCTATTGTCTTGGATAG 541
Query 915 AAATCCAGAACTAAGGCAAGAAGGGATGGCGTACGAAGTTTTACAGTGGTACTTATGTAG 974
||||||||||||||||| | |||| || |||||||||||||| |||||||||||||||||
Sbjct 542 AAATCCAGAACTAAGGCTACAAGGTATAGCGTACGAAGTTTTGCAGTGGTACTTATGTAG 601
Query 975 GATGGAGGCGTGGTTTGCTGTAGATGCGAATTTAATTTCACTAAAATGTTGGGATCAGGA 1034
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 602 GATGGAGGCATGGTTTGCTGTAGATGCGAATTTGATATCACTAAAATGTTGGGATCAGGA 661
Query 1035 TGAATGTCTTTCAGGTGGTCATGGTCTAATGGTGCAGGGTTATGAGCCAGTGATCAGAAC 1094
|||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 662 TGAATGTCTTTCTGGTGGTCATGGTTTAATGGTGCAGGGTTACGAGCCAGTAATCAGAAC 721
Query 1095 AATTGCAAAAGATCTTGATATTCGCTTGAACCATAGGGTTACTAAAGTTGTAAGAACATC 1154
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 722 AATTGCAAAAGATCTTGATATTCGCTTGAGCCATAGGGTTACTAAAGTTGTAAGAACATC 781
Query 1155 TAATAACAAGGTGATAGTCGCAGTTGAAGGCGGAACCAATTTTGTTGCTGATGCTGTTAT 1214
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 782 TAATAACAAGGTGATAGTCGCAGTTGAAGGTGGAACCAATTTTGTTGCTGATGCTGTTAT 841
Query 1215 TATTACGGTTCCAATCGGTGTTCTCAAGGCAAATCTAATTCAATTTGAGCCAGAGCTCCC 1274
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 842 TATTACGGTTCCAATCGGTGTCCTCAAGGCAAATCTAATTCAATTCGAGCCAGAGCTCCC 901
Query 1275 ACAATGGAAAACCTCTGCGATATCGGGTCTCGGTGTAGGCAATGAGAATAAGATTGCCTT 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 ACAATGGAAAACCTCTGCGATATCGGGTCTCGGTGTAGGCAATGAGAATAAGATTGCCCT 961
Query 1335 GAGATTTGACAGAGCGTTTTGGCCTAATGTGGAGTTCCTCGGGATGGTGGCACCGACTTC 1394
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 962 GAGATTTGACAGAGCGTTTTGGCCCAATGTGGAGTTCCTCGGGATGGTGGCTCCGACTTC 1021
Query 1395 TTACGCATGTGGCTATTTTCTGAATCTTCACAAGGCAACAGGCCATCCGGTGCTTGTTTA 1454
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1022 TTACGCATGTGGCTATTTTCTGAATCTTCATAAAGCAACAGGCCATCCGGTGCTTGTTTA 1081
Query 1455 TATGGCTGCAGGGAATCTAGCACAAGACCTCGAAAAGCTATCTGATGAAGCTACAGCAAA 1514
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1082 TATGGCTGCAGGGAATCTAGCACAAGACTTGGAAAAGCTATCTGATGAAGCTACAGCAAA 1141
Query 1515 TTTCGTGATGCTGCAACTTAAGAAAATGTTTCCAGACGCACCTGACCCGGCTCAATATCT 1574
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1142 TTTCGTGATGCTGCAACTTAAGAAAATGTTTCCCGACGCTCCAGACCCGGCTCAATATCT 1201
Query 1575 AGTGACACGGTGGGGAACGGATCCAAATACATTGGGGTGTTATGCGTATGACGTAGTAGG 1634
||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1202 AGTGACAAGGTGGGGAACAGATCCAAACACATTAGGGTGTTATGCGTATGACGTAGTAGG 1261
Query 1635 AATGCCGGAAGATCTGTACCCGAGGCTAGGAGAGCCGGTTGATAATATTTTCTTCGGAGG 1694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1262 GATGCCGGAAGATCTGTACCCGAGGCTAGGAGAGCCGGTTGATAATATTTTCTTCGGCGG 1321
Query 1695 AGAAGCCGTGAACGTCGAGCATCAAGGATCCGCTCACGGAGCTTTCTTAGCAGGAGTCTC 1754
|||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||| |
Sbjct 1322 AGAAGCCGTGAATGTGGAGCATCAAGGATCGGCTCATGGAGCCTTCTTAGCAGGAGTCAC 1381
Query 1755 GGCCTCGCAGAATTGTCAAAGGTATATCTTTGAACGACTCGGGGCTTGGGAGAAACTCAA 1814
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1382 AGCCTCGCAGAATTGTCAAAGGTATATCTTTGAGCGACTCGGGGCTTGGGAGAAACTTAA 1441
Query 1815 GCTTGTTTCTCTTATGGGGAACAGTGACATTCTCGAAACTGCAACTGTGCCTCTCCAAAT 1874
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ACTTGTTTCTCTTATGAGGAACAGTGACATTCTCGAAACTGCAACTGTGCCTCTCCAAAT 1501
Query 1875 CTCCAGGATGTGATT 1889
|||||||||||||||
Sbjct 1502 CTCCAGGATGTGATT 1516
> Ahg925710 jgi|Araly1|925710|scaffold_201271.1
Length=195
Score = 313 bits (169), Expect = 4e-84
Identities = 180/185 (97%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 102 gaacaaaaaaaaaaaTGCTCCGATCACGGAATTGTAAGATCTCCGCCGCGAACGAAGCCG 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GAACAAAAAAAAAAATGCTCCGATCACGGAATTGTAAGATCTCCGCCGCGAACGAAGCCG 68
Query 162 TTATTTCTAATCGTCTTTCAATTTCTAATCTCAAAGTTTTATTCGTTTTTGAATCCTCGC 221
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TTATATCTAATCGTCTTTCAATTTCTAATCTCAAAGTTTTATTCGTTTTTGAATCCTCGC 128
Query 222 CATTGAATAATTTGATTAATCGTTTTTCCGATAAGCTTCGTCGTTGAA-CTTATCTCCGA 280
||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||
Sbjct 129 CATTGAATAATTTGATTAATCGTTTTTCCGATAAGCTTCTTCGTTGAATCCT-TCTCCGA 187
Query 281 TCTCT 285
|||||
Sbjct 188 TCTCT 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5