BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65845.1

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315619 jgi|Araly1|315619|fgenesh1_pm.C_scaffold_2000652           407    4e-113


> Ahg315619 jgi|Araly1|315619|fgenesh1_pm.C_scaffold_2000652
Length=324

 Score =  407 bits (220),  Expect = 4e-113
 Identities = 293/326 (90%), Gaps = 13/326 (4%)
 Strand=Plus/Plus

Query  17   ATGATAATGaa-aaaaaCAACTCAAGCGTATCTTCTTCTAAGTTTAGTTCATATACTTCT  75
            ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGATAATGAAGAAAAA-AACTCAAGCTTATCTTCTTCTAAGTTTAGTTCATATACTTCT  59

Query  76   ATGTCTATCCTTTCAGATTCGTGC--T--A---TA--CGCCCTCTTCTAGCTGAGCCGCC  126
            ||||||||||||||||||||||||  |  |   ||  |||||||| | ||||||||| ||
Sbjct  60   ATGTCTATCCTTTCAGATTCGTGCCATTGAGGCTATACGCCCTCTCCAAGCTGAGCCCCC  119

Query  127  AAGTCAAATCCTAAATCCACCACCACCCTCGCCCGTATGGCCCTCTCCACCATGTGGAAC  186
            ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct  120  AAGTCAAATCCGAAATCCACCACCACCCTCGCCTGCATGGCCCTCTCCACCATGTGGATC  179

Query  187  TAATATCGGGAGTCAAGTTACGGCAGTAGGAGAGAATTCTTGCAGACAAATTCCGAGGCC  246
            ||||||||| ||||||||||| ||| || ||||||| ||||| ||||||||||| |||||
Sbjct  180  TAATATCGGAAGTCAAGTTACTGCAATAAGAGAGAAGTCTTGTAGACAAATTCCAAGGCC  239

Query  247  TCCTaaaaccaaaaagaagaaaattccaaagcctcttaaaaccaaaaagaagaaaatctc  306
            ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct  240  TCCTAAAACCAAAAAGAAGAAAACTCCAAAGCCTCTTAAAACCAAAAAGAACAAAATTTC  299

Query  307  aaagCCTCATGCAGC-AGTTCCGTGA  331
            || ||||| |||||| | ||||||||
Sbjct  300  AAGGCCTCCTGCAGCTA-TTCCGTGA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17742348885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5