BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65870.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267 676 0.0
Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840 392 1e-108
> Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267
Length=930
Score = 676 bits (366), Expect = 0.0
Identities = 490/550 (89%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 25 CTTCTTCCTCTGTTCTTAGCTCTTATTCTCGCAGCCACCATTACAGAATCAAAATCTTTC 84
|||||||||||||||| ||||||| || |||| ||||||||||||||||| || ||| |
Sbjct 385 CTTCTTCCTCTGTTCTCAGCTCTTCTTTTCGCGGCCACCATTACAGAATCCGAAGCTTAC 444
Query 85 TCAACAACAGTGAAGGCACCATATCCAGGACATAAACCGGATAAGCTAACCCACTTACAC 144
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 445 TCAACAACAGTGAAGGCACCGTATCCAGGACATAAACCGGAGAAGCTAACCCACCTACAC 504
Query 145 TTCTACTTCCACGACATTGTCTCC-GGAGACAAACCAACCTCCGTCCAAGTCGCTAACGG 203
|||||||||||||||||| ||||| ||| ||||||||||| |||||| ||| |||| ||
Sbjct 505 TTCTACTTCCACGACATTATCTCCGGGA-ACAAACCAACCGCCGTCCCAGTTGCTAGGGG 563
Query 204 TCCAACCACAAACTCTTCTGCCACCGGTTTCGGTTTGGTTGCAGTCGTTGACGA-CAAAT 262
||| | |||||||| ||||| ||| | |||| |||||||||| ||| |||||| | ||
Sbjct 564 TCCTGCAACAAACTCCTCTGCAACCAGCTTCGCTTTGGTTGCAATCGCTGACGATC-CAT 622
Query 263 TGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTGGGAGAGCCCAAGGAATGTATGCAT 322
||||| | |||||||||| |||||||||||| | |||||||||||||| ||||||||||
Sbjct 623 TGACGATTGGGCCTGAAAGAACCTCAGAGGAAATCGGGAGAGCCCAAGGGATGTATGCAT 682
Query 323 CGGCTGACCAGAACAAGC-TTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACGAAGGGT 381
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 CGGCTGACCAGAACAA-CTTTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACCAAGGGT 741
Query 382 AAATTTTCCGACAGCACCGTGGCGATGTATGGCCGGAATCCTG-TATTGTCGAAGGTGAG 440
||||||||| |||||||| | ||||||||||||||||||| | ||||||||||| ||||
Sbjct 742 GAATTTTCCGGCAGCACCGCGTCGATGTATGGCCGGAATCC-GATATTGTCGAAGCTGAG 800
Query 441 GGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAGGTTCGGAAGAGGATATGCATTGGC 500
|| ||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 801 AGAGATGCCGATCATCGGAGGTACGGGAGCATTCAGGTTCGCAAGAGGATATGCACAGGC 860
Query 501 CAAGACTTTGGTGTTCAATATTACCAGTGGAGATGCTGTGGTCGAATATAATGTCTATAT 560
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 861 CAAGACTTTTGTGTTCAATATTACCAGTGGAGATGCTGTTGTCGAGTATAATGTCTATAT 920
Query 561 TTGGCATTAA 570
|||||||||
Sbjct 921 CTGGCATTAA 930
> Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840
Length=333
Score = 392 bits (212), Expect = 1e-108
Identities = 294/334 (88%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 239 TGGTTGCAGTCGTTGACGACAAATTGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTG 298
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TGGTTGCAGTGGTTGACGACATATTGACGGTGGGGCCTGAAATTACCTCAGAGGAAGTTG 61
Query 299 GGAGAGCCCAAGGAATGTATGCATCGGCTGACCAGAACAAGCTTGGTCTGCTTATGGCTT 358
|||||||||||||||| | |||| || | |||||||| ||| || |||||||||||||||
Sbjct 62 GGAGAGCCCAAGGAATTTTTGCAGCGACCGACCAGAATAAGTTTAGTCTGCTTATGGCTT 121
Query 359 TTAACTTGGTTTTCACGAAGGGTAAATTTTCCGACAGCACCGTGG-CGATGTATGGCCGG 417
| |||||||||||||| |||||| ||||||| | |||||| | || ||||||||||||||
Sbjct 122 TCAACTTGGTTTTCACCAAGGGTGAATTTTCGGGCAGCACGG-GGTCGATGTATGGCCGG 180
Query 418 AATCCTG-TATTGTCGAAGGTGAGGGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAG 476
||||| | || |||| |||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 181 AATCC-GATAATGTCAAAGGTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCTTTTAG 239
Query 477 GTTCGGAAGAGGATATGCATTGGCCAAGACTTTGGTGTTCAATATTACCAGTGGAGATGC 536
||| || ||||||||||| |||||||||||| |||||||| |||| ||||| ||||
Sbjct 240 GTTTGGTAGAGGATATGCGCAGGCCAAGACTTTTACGTTCAATACTACCCGTGGAAATGC 299
Query 537 TGTGGTCGAATATAATGTCTATATTTGGCATTAA 570
||||||||| |||||||||||||| |||||||||
Sbjct 300 TGTGGTCGAGTATAATGTCTATATCTGGCATTAA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5