BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65890.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908054 jgi|Araly1|908054|Al_scaffold_0002_1135 1027 0.0
> Ahg908054 jgi|Araly1|908054|Al_scaffold_0002_1135
Length=711
Score = 1027 bits (556), Expect = 0.0
Identities = 659/710 (93%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 49 ATGGATAATTTGGCGTTATGTGAAGCAAACAATGTTCCTCTAACTCCCATAACGTTCTTG 108
|||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGGATAACTTGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTTG 60
Query 109 AAGAGAGCTTCGGAGTGTTATCCGAATCGAACTTCGATAATATACGGAAAAACTCGTTTC 168
||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 61 AAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTTC 120
Query 169 ACTTGGCCTCAGACCTATGACCGTTGCTGTCGTCTAGCCGCTTCTCTCATATCTCTTAAT 228
|||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 121 ACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAAC 180
Query 229 ATCGGCAAGAACGATGTGGTATCCGTTGTTGCTCCAAACACACCGGCCATGTATGAGATG 288
|||| |||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 181 ATCGCCAAGAACGATGTGGTATCCGTTGTGGCCCCAAACATACCGGCCATATATGAGATG 240
Query 289 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCTATCAACACTCGTCTAGACGCA 348
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGACGCA 300
Query 349 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATTTTATTCATATACCGCAGT 408
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 301 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGACCGCAGT 360
Query 409 TTTGAGCCATTGGCTCGAGAAATCCTCCAGT-TATTATCATCTGAAGACTCAAACCTAAA 467
|||||||| |||||||||||||| ||||| | || |||||| ||| ||||||||||||||
Sbjct 361 TTTGAGCCCTTGGCTCGAGAAATTCTCCA-TCTACTATCATGTGATGACTCAAACCTAAA 419
Query 468 CTTGCCGGTCATATTTATCCACGAGATTGATTTCCCTAAAAGGGTTTCGTCCGAGGAGTC 527
||||| |||||||||||| |||||| |||| ||||||||||||||||| || ||||
Sbjct 420 CTTGCTGGTCATATTTATTGACGAGAACGATTACCCTAAAAGGGTTTCGTGTGACGAGTT 479
Query 528 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTTGTTGTTGGCACGCATGTT 587
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 480 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTCCTTGGTGGCACGTATGTT 539
Query 588 CTGTATTCAAGACGAGCATGATCCAATCTCTTTAAACTACACATCGGGTACCACAGCCGA 647
| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 540 CCGTATTCAAGACGAGCATGATCCAATCTCATTAAACTACACATCGGGTACAACTGCCGA 599
Query 648 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTAAGCACATTAAGCGCGATTAT 707
||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 600 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGCTCATTAAGCGTGATTAT 659
Query 708 TGGTTGGGAAATGGGGACATGCCCTGTCTACCTTTGGACTCTGCCTATGT 757
|||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 660 TGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCTACCTATGT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5