BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65910.1
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908056 jgi|Araly1|908056|Al_scaffold_0002_1137 2961 0.0
> Ahg908056 jgi|Araly1|908056|Al_scaffold_0002_1137
Length=1899
Score = 2961 bits (1603), Expect = 0.0
Identities = 1804/1902 (95%), Gaps = 9/1902 (0%)
Strand=Plus/Plus
Query 57 ATGGCTCCTGTTTCAATGCCTCCAGGTTTCCGGTTTCATCCAACAGACGAAGAGCTTGTC 116
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCTGTTTCAATGCCTCCTGGTTTCCGGTTTCATCCAACAGACGAAGAGCTTGTC 60
Query 117 ATATACTACCTCAAGCGAAAGATTAATGGTCGGACTATTGAGTTAGAGATAATACCCGAG 176
||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct 61 ATATACTACCTCAAGCGAAAGATTAATGGTCGGACGATCGAGTTAGAGATAATTCCGGAG 120
Query 177 ATTGATCTTTACAAATGCGAACCTTGGGATTTACCTGGGAAGTCCTTGCTGCCAAGTAAA 236
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ATTGATCTTTACAAATGTGAACCTTGGGATTTACCCGGGAAGTCCTTGCTGCCAAGTAAA 180
Query 237 GACCTAGAATGGTTCTTTTTCAGTCCTCGAGACCGGAAATATCCAAACGGATCAAGAACA 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACCTAGAATGGTTTTTTTTCAGTCCTCGAGACCGGAAATATCCAAACGGATCAAGAACA 240
Query 297 AACCGGGCGACCAAAGCAGGTTACTGGAAAGCCACCGGGAAAGATCGTAAAGTGACTTCA 356
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCGGGCGACAAAAGCCGGTTACTGGAAAGCCACCGGGAAAGATCGTAAAGTGACTTCA 300
Query 357 CATTCACGGATGGTTGGAACAAAGAAAACATTAGTTTATTACCGAGGAAGAGCGCCTCAT 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATTCGCGGATGGTTGGAACAAAGAAAACATTAGTTTATTACCGAGGAAGAGCGCCTCAT 360
Query 417 GGCTCTCGTACCGATTGGGTCATGCACGAGTACCGTCTTGAAGAACAAGAATGTGACTCT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GGCTCTCGTACCGATTGGGTCATGCACGAGTACCGTCTTGAAGAACAAGAATGTGATTCT 420
Query 477 AAATCCGGTATACAGGATGCCTATGCACTTTGTCGAGTATTTAAGAAGAGTGCTTTAGCC 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATCCGGCATACAGGATGCCTATGCACTTTGTCGAGTATTTAAGAAGAGTGCTTTAGCC 480
Query 537 AACAAAATTGAAGAACAACACCATGGTACGAAGAAGAACAAAGGAACGACTAATAGTGAA 596
||||| || ||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 481 AACAAGATAGAAGAACAACACCATGGTACGAAGAAGAATAAAGCAACGACCAATAGCGAA 540
Query 597 CAATCTACTTCTAGTACTTGTTTGTATTCTGATGGAATGTATGAAAACCTCGAAAACTCG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAATCTACTTCTAGTACTTGTTTGTATTCTGATGGAATGTATGAAAACCTCGAAAACTCG 600
Query 657 GGGTATCCAGTCTCACCTGAG-ACAGGAGGCTTAACTCAACTCGGTAATAATTCGTCGTC 715
|||||||| ||||| || | | |||||||||||||||||||| |||||||||||||||||
Sbjct 601 GGGTATCCGGTCTCCCCCG-GTACAGGAGGCTTAACTCAACTTGGTAATAATTCGTCGTC 659
Query 716 GGATATGGAAACGATAGAGAATAAATGGAGTCAGTTTATGTCGCATGACACGTCCTTCAA 775
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGATATGGAAACGATAGAGAACAAATGGAGTCAGTTTATGTCGCATGACACGTCCTTCAA 719
Query 776 CTTCCCACCTCAGTCTCAATATGGAACAATCTCATATCCTCCCTCGAAGGTTGATATAGC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTCCCACCTCAGTCTCAATATGGAACAATCTCATATCCTCCCTCGAAGGTTGATATAGC 779
Query 836 GTTAGAGTGTGCAAGACTACAAAATCGTATGTTGCCACCAGTACCACCACTTTACGTAGA 895
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 780 GTTAGAGTGTGCAAGACTACAAAATCGTATGTTGCCACCGGTTCCACCACTTTACGTAGA 839
Query 896 AGGTCTCACACACAATGAATATTTTGGAAACAATGTAGCTAACGATACAGATGAAATGTT 955
|||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 840 AGGTCTCACACACAGTGAATATTTGGGAAACAACGTTGCTAACGATACAGATGAAATGTT 899
Query 956 GAGCAAGATTATAGCATTGGCTCAAGCCTCACATGAGCCACGAAACAGTCTAGACTCATG 1015
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 900 GAGCAAGATTATAGCATTGGCTCAAGCCTCCCATGAGCCACGAAACAGTCTAGACTCGTG 959
Query 1016 GGACGGTGGTTCTGCTTCCGGGAACTTCCATGGAGACTTTAACTATTCCGGAGAAAAAGT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGACGGTGGTTCTGCTTCCGGGAACTTCCATGGAGACTTTAACTATTCCGGAGAAAAAGT 1019
Query 1076 CTCATGCCTAGAGGCGAACGTGGAGGCTGTAGATATGCAAGAACACCATGTGAATTTTAA 1135
||||||| ||||||| |||||| |||||||||||||||||||||| ||| || || |||
Sbjct 1020 CTCATGCATAGAGGCAAACGTGAAGGCTGTAGATATGCAAGAACATTATGGGAGTTATAA 1079
Query 1136 GGAAGAAAGACTTGTTGAAAACTTGAGATGGGTAGGAGTATCAAGCAAGGAACTTGAAAA 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 GGAAGAAAGACTTGTTGAAAACTTGAGATGGGTAGGAGTATCAAGCAAGGAACTAGAAAA 1139
Query 1196 GAGCTTCGTTGAAGAACACTCAACGGTAATTCCTATAGAAGATATTTGGAGATATCATA- 1254
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1140 GAGCTTCGTTGAAGAACACTCAACGGTAGTTCCTATAGAAGATATTTGGAGCTATCATAG 1199
Query 1255 ATGATAATCAAGAACAAGAACATCATGATCAAGATGGTATGGACGTTAACAACAACAATG 1314
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1200 A-GATAATCAAGAACAAGAACATCAAGATCAAGATGGTATGGACGTTAACAACAACAATG 1258
Query 1315 GAGATGTGGATGATGCTTTCACACTCGAGTTTTCGGAAAACGAACATAACGAGAATCTTT 1374
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1259 GAGATGTGGATGATGCTTTCACACTTGAGTTCTCGGAAAACGATCATAACGAGAATCTTT 1318
Query 1375 TGGACAAGAACGATCATGAGACAACGAGTTCCTCATGTTTTGAGGTGGTaaaaaaaGTTG 1434
||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1319 TGGACAAGAGCGATCATGACACAACGAGTTCCTCATGTTTTGAGGTGATAAAAAAGGTTG 1378
Query 1435 AGGTTAGCCATGGATTGTTTGTCACAACTCGTCAGGTAACCAACACATTCTTCCAACAGA 1494
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1379 AGGTTAGCCATGGATTGTTTGTCACAACTCGTCAGGTAACCAATACATTCTTCCAAAAGA 1438
Query 1495 TAGTACCATCGCAAACCGTTATAGTTTATATAAATCCGACGGATGGCAATGAGTGTTGTC 1554
| ||||| ||||||||||||||||||||||||||||| |||| | |||||| |||||||
Sbjct 1439 TCGTACCTTCGCAAACCGTTATAGTTTATATAAATCCAACGGGCGCCAATGAATGTTGTC 1498
Query 1555 ATAGTATGACATCAAAAGAGGAGGTTCATGTCCGTAAAAAGATAAATCCGCGAA-TCAAC 1613
||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| || ||||
Sbjct 1499 ATAATATGACATCAAAAGAAGAGGTTCCTGTCCGTAAAAAGATCAATCCGC-AACTCAAT 1557
Query 1614 GGAGTAAGCTCAACAGTTCTTGGACAATGGAGAAAATTCGCGCATGTTATTGGCTTCATT 1673
|||||| |||||||| |||||| || |||||||||||| | | | ||||||||||||| |
Sbjct 1558 GGAGTAGGCTCAACATTTCTTGTACCATGGAGAAAATTTGTGTACGTTATTGGCTTCAAT 1617
Query 1674 CCTATGCTTCTATTGATGCGTTGTGTTCATC--G-AGGTAACTCTAACAAAAACAGAGGC 1730
||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1618 CCTATGCTTCTATTGATGCGTTGTGTTCATCAAGGAGGTAACTCTAACAAAAACAGAAGC 1677
Query 1731 AGTGAAGGTTACTCGAGGCAGCCTACGAGAGGAGATTGTAACAATCGGGGAACAATACTC 1790
|||||| ||||||| |||||||||| || |||| |||||||||||| ||| |||||||||
Sbjct 1678 AGTGAATGTTACTCAAGGCAGCCTAAGAAAGGAAATTGTAACAATCTGGGCACAATACTC 1737
Query 1791 ATGATGGAAAATGCTGTCGTGagaagaaaaatttggaagaagaagaaagagaaaaaTATG 1850
||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||
Sbjct 1738 ATGATGGAAAATGCTGTAGTGAGAAGAAAATTTTCGAAGAAGAAGAAAGAGAAAAACATG 1797
Query 1851 GTTGACGAACAAGGTTTTCGGTTTCAAGATAGTTTCGTATTGAAGAAGTTGGGGCTTTCT 1910
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1798 GTTGATGAACAAGGTTTTCGGTTTCAAGATAGTTTCGTGTTGAAGAAGTTGGGGCTTTCT 1857
Query 1911 CTTGCTATCATCTTAGCTGTTTCTACCATAAGTCTTATTTGA 1952
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CTTGCTATCATCTTAGCTGTTTCTACCATAAGTCTTATTTGA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78770626660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5