BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65920.1
Length=3276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475695 jgi|Araly1|475695|fgenesh2_kg.2__825__AT1G65920.1 4796 0.0
> Ahg475695 jgi|Araly1|475695|fgenesh2_kg.2__825__AT1G65920.1
Length=3252
Score = 4796 bits (2597), Expect = 0.0
Identities = 3019/3223 (94%), Gaps = 28/3223 (1%)
Strand=Plus/Plus
Query 59 tcttcttcttcttcttcttctctGACAAAGTTATGGGCGAACAACAAATCTCAGTTACAG 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 51 TCTTCTTCTTCTTCTTCTTCTCTGACAAAGTTATGGGCGAACAACAAATCTCAGCTACAG 110
Query 119 TGCCTCGTGATAGAACTGATGAACAGGCAATCTTGGCTTTGAAGAAAGGTGCACAGCTTT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 111 TGCCTCGTGATAGAACTGATGAACAGGCAATCTTGGCTTTGAAGAAAGGTGCTCAGCTTC 170
Query 179 TGAAATGTCGAAGAAGAGGAAACCCAAAGTTTTGTCCTTTTAAACTCTCAATGGATGAGA 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 171 TGAAATGTCGAAGAAGAGGAAACCCAAAGTTTTGTCCTTTCAAACTCTCAATGGATGAGA 230
Query 239 AGTACTTGATTTGGTACTCAGGAGAAGAGGAGAGACAATTGAGATTGAGTTCTGTTATAA 298
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 231 AGTACTTGATTTGGTACTCAGGAGAAGAAGAGAGACAATTGAGATTGAGTTCGGTTATAA 290
Query 299 CGATTGTTCGCGGACAAATCACACCAAACTTTCAGAAACAAGCACAATCTGATCGAAAGG 358
| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 291 CAATCGTTCGAGGACAAATCACGCCAAACTTTCAGAAACAAGCGCAATCGGATCGAAAGG 350
Query 359 AACAGTCTTTTTCACTCATTTATGCAAATGGAGAACACACTCTTGATCTCATATGTAAGG 418
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 351 AGCAGTCTTTTTCACTCATTTATGCAAATGGAGAACACACTCTTGATCTTATATGCAAGG 410
Query 419 ATAAAGCACAAGCAGACTCATGGTTTAAAGGTCTTAGAGCTGTGATAACAAAGCATCATA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 ATAAAGCACAAGCAGACTCATGGTTTAAAGGTCTTAGAGCTGTGATAACAAAGCACCATA 470
Query 479 ACATTAGAAACTCTGTGAATCATCGGAGTAGTAGGGGAGCTCAAAGTTGCATCAATAGTC 538
||||||| ||||||| ||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 471 ACATTAGGAACTCTGCGAATCTTCGGACTAGTAGAGGAGCTCAAAGTTGCATCAATAGTC 530
Query 539 CTGCGGGTTTTATGCGAAGGAAACAGAATCTTGGACTTCTTGAAGAGACTCCTGACGTCA 598
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 531 CTGCGGGTTTTATGCGCAGGAAACAGAATCTTGGACTTCTTGAAGAGACTCCTGACTTAA 590
Query 599 CTCAGATACGTAGCTTATGTGGAAGTCCATCGACGTTACTTGAAGAGCGGTGTTTGTCGA 658
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 591 CTCAGATACGCAGTTTATGTGGAAGTCCATCTACGTTACTTGAAGAGCGGTGTTTGTCAA 650
Query 659 ACGGGTTGTCATGTTCTTCAGATAGTTTTGCTGAATCTGATGCCTTGGGTCCAGTTTCTT 718
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 651 ATGGGTTGTCATGTTCTTCAGACAGTTTTGCTGAATCTGATGCCTTGGGTCCAGTTTCTT 710
Query 719 CTTACTATGAAACAGATTATGATTTCAGGAACTCGGATTGTGATCGTAGTACAGGTTCAG 778
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 711 CTTACTATGAAACAGATTATGATTTCAGGAACTCGGATTGTGAAC---GTACAGGCACAG 767
Query 779 AACTTTGCAGGTTTTCATCACAAAGATTTGCTGCTTCTCCTCCTCTTTCTATCATAACAC 838
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 AACTTTGCAGGTTTTCATCACAAAGATTTGCTGCTTCTCCTCCTCCTTCTATCATAACAC 827
Query 839 AGCCGGTTACAAGATCCAATGTCCTTAAGGACATTATGATATGGGGAGCTATAACGGGTC 898
||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 828 AGCCGATTACAAGATCCAATGTCCTCAAGGATATAATGATATGGGGAGCTATAACGGGTC 887
Query 899 TTATCGATGGATCGAAGAATCAGAACGATGCGTTGTCTCCTAAGCTTTTGGAATCTGCTA 958
||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 888 TTATCGATGGATCAAAGAATCAGAACGATGCGTTATCTCCTAAGCTTTTAGAATCTGCCA 947
Query 959 CGATGTTTGATGTACAGAGTATATCTCTAGGTGCAAAACATGCTGCGTTGGTTACAAGAC 1018
| |||||||||||||||||||||||||||||||||||||| || ||| |||| || ||||
Sbjct 948 CAATGTTTGATGTACAGAGTATATCTCTAGGTGCAAAACACGCCGCGCTGGTCACTAGAC 1007
Query 1019 AAGGTGAAGTGTTTTGTTGGGGGAATGGAAATAGTGGGAAGCTTGGACTTAAAGTTAACA 1078
|||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 1008 AAGGTGAAGTGTTTTGTTGGGGAAATGGAAACAGTGGTAAGCTCGGACTTAAAGTTAACA 1067
Query 1079 TCGATATCGACCATCCGAAACGCGTTGAGTCTCTTGAGGATGTTGCAGTTCGATCAGTGG 1138
|||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1068 TCGACATCGACCATCCGAAACGCGTTGAATCACTTGAGGATGTTGCGGTTCGATCAGTGG 1127
Query 1139 CTTGTAGTGATCATCAAACGTGTGCTGTTACGGAATCTGGTGAGCTGTATTTATGGGGAA 1198
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1128 CTTGTAGTGATCATCAAACATGTGCTGTTACGGAATCCGGTGAGCTGTATTTATGGGGAA 1187
Query 1199 TTGATGGTGGAACCATTGAACAGTCAGGAAGCCAGTTCTTGACTCGGAAGATATCCGATG 1258
| ||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||
Sbjct 1188 TCGATGGTGGAACCATTGAGCAATCAGGAAGCCAATTCTTAACTCGGAAGATATCAGATG 1247
Query 1259 TTCTTGGCGGATCTTTGACTGTTTTAAGTGTTGCTTGTGGCGCGTGGCACACGGCAATTG 1318
|||||||||||||| ||| | |||| ||||||||||||||||| ||||| |||||||| |
Sbjct 1248 TTCTTGGCGGATCTCTGAGTATTTTTAGTGTTGCTTGTGGCGCTTGGCATACGGCAATGG 1307
Query 1319 TGACTAGTTCTGGTCAGCTTTTCACTTATGGTAGTGGAACTTTTGGAGTTCTTGGACATG 1378
|||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1308 TGACTAGTTCTGGTCAACTTTTCACTTATGGTAGCAGAACCTTTGGAGTTCTTGGACATG 1367
Query 1379 GGAGTCTTGAGAGTGTTACAAAGCCGAAAGAAGTTGAGTCTTTGAGACGCATGAAGGTCA 1438
|||| |||||||||| ||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 1368 GGAGCCTTGAGAGTGCTACCAAGCCGAAAGAAGTGGAGTCTTTGAGACGAATGAAGGTAA 1427
Query 1439 TATCTGTCTCTTGTGGACCGTGGCACACGGCTGCTATAGTGGAAACCGCGAACGACCGGA 1498
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1428 TATCTGTTTCTTGTGGACCGTGGCACACGGCTGCTATAGTGGAAACCGCGATCGACCGGA 1487
Query 1499 AATTCTACAACGCCAAGAGTTGTGGAAAGCTGTTTACTTGGGGAGATGGCGATAAAGGAC 1558
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1488 AATTCTACAATGCTAAGAGTTGCGGAAAGCTGTTTACTTGGGGAGATGGCGATAAAGGAC 1547
Query 1559 GGTTAGGACATGCTGATAGCAAGAGAAAGCTTGTGCCAACTTGTGTTACTGAACTCATTG 1618
||||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||
Sbjct 1548 GGTTAGGACATGCGGATAGCAAGAGAAAGCTCGTGCCAACGTGTGTTACCGAGCTCATTG 1607
Query 1619 ATCATGATTTCATAAAAGTCTCTTGTGGATGGACTTTAACTGTTGCTTTAAGCATTTCAG 1678
||||||||||||| |||||||||||||| ||||||||||||||||| | ||| ||||||
Sbjct 1608 ATCATGATTTCATTAAAGTCTCTTGTGGTTGGACTTTAACTGTTGCACTCAGCGTTTCAG 1667
Query 1679 GAACGGTTTATACAATGGGAAGCTCGATCCACGGACAGTTAGGATGTCCGCGGGCAAAGG 1738
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1668 GAACGGTTTATACAATGGGAAGCTCGATCCACGGGCAGTTGGGATGTCCGCGGGCAAAGG 1727
Query 1739 ATAAGTCGGTAAATGTTGTTTTAGGCAATCTAACACGACAATTTGTCAAGGATATTGCTT 1798
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 ATAAGTCGATAAATGTTGTTTTAGGCAATCTAACACGACAATTTGTCAAGGATATTGCTT 1787
Query 1799 CAGGTTCACATCATGTAGCTGTTCTAACTTCATTTGGAAATGTTTATACTTGGGGAAAAG 1858
| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1788 CGGGTTCACATCATGTAGCCGTGCTAACTTCGTTTGGAAATGTTTATACTTGGGGAAAAG 1847
Query 1859 GCATGAATGGACAACTTGGTTTAGGTGACGTTAGAGATAGAAACTCTCCTGTTCTTGTTG 1918
||| |||||||||||| || ||||| || ||||||||||||||||| || ||||||||||
Sbjct 1848 GCACGAATGGACAACTCGGATTAGGCGATGTTAGAGATAGAAACTCGCCGGTTCTTGTTG 1907
Query 1919 AGCCTTTAGGTGATAGGTTGGTAGAAAGTATAGCTTGCGGGTTGAATTTGACGGCTGCGA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 AGCCTTTAGGTGATAGGTTGGTAGAAAGTATAGCTTGCGGGTTGAATTTGACGGCTGCGA 1967
Query 1979 TCTGTTTACACAAAGAGATCTCTTTGAATGATCAAACCGCTTGTAGTTCTTGCAAATCAG 2038
||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1968 TCTGTTTGCACAAAGAAATCTCTTTGACTGATCAAACCGCTTGTAGTTCTTGCAAATCAG 2027
Query 2039 CTTTTGGATTCACAAGGAGAAAGCATAACTGTTACAACTGTGGTCTATTGTTTTGCAATG 2098
|||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 2028 CTTTTGGATTCACAAGGAAAAAGCACAACTGTTACAACTGTGGTCTATTGTTCTGCAATG 2087
Query 2099 CATGTAGTAGCAAGAAAGCGGTAAATGCTTCGTTAGCACCGAATAAAAGCAAGCTTTCTC 2158
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct 2088 CATGTAGTAGCAAGAAAGCGGTAAATGCTTCGTTGGCGCCAAACAAAAGCAAGCTTTCTC 2147
Query 2159 GGGTTTGCGATTCTTGCTTTGATCATCTATGGAGTATAACAGAGTTTTCAAGAAATGTTA 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 GGGTTTGCGATTCTTGCTTTGATCATCTATGGAGTATAACAGAGTTTTCAAGAAATGTTA 2207
Query 2219 AGATGGATAATCACACTCCGAGGATGCAGATGGTTACACGAAGAGTATCTGAGGATTTGA 2278
||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 2208 AGACGGAGAATCACACTCCGAGGATGCAGCTGGTTACACGAAGGGTATCTGAGGATTGGA 2267
Query 2279 CAGAAAAACAATCAGAGAATGAGATGCAGAATCTTCCACAAGCTAATCGATCTTCGGATG 2338
|||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 2268 CAGAAAAAGAAGCAGAGAATCAGATGCAGAATGTTCCACAAGCTAATCGATTTTCGGATG 2327
Query 2339 GACAGCCTCGATGGGGACAAGTCTCTGGTCCTTCTCTGTTTCGTTTCGATAAGATTTCGA 2398
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 2328 GACAGCCTCGATGGGGACAAGTCTCTGTTCCTTCTCTGTTTCATTTCGATAAAATTTCGA 2387
Query 2399 CAAGTTCTTCT-TTGAATCTTTCAGTCTCAGCAAGGCGAACATCTTCAACGAAGATTTCA 2457
|||||||| || || ||||| ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 2388 CAAGTTCTCCTATT-AATCTATCAGTCTCAGCGAGGCGACCATCTTCTACGAAGATTTCA 2446
Query 2458 ACCTCGTCTGAGTCGAATAAGATCTTAACCGAAGAAATCGAAAGGCTAAAAGCCGTGATA 2517
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||
Sbjct 2447 ACCTCGTCTGAGTCGAATAAGATCTTAATCGAAGAAATTGAAAGACTAAAAGCCGAGATA 2506
Query 2518 AAAAATCTCCAGAGGCAGTGTGAACTTGGCAATGAGAAGATGGAAGAATGTCAACAAGAG 2577
| ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2507 AGAAATCTCCAGAAGCAGTGTGAACTTGGGAACGAGAAGATGGAAGAATGCCAACAAGAG 2566
Query 2578 CTCGACAAGACATGGGAAGTTGCTAAAGAAGAAGCAGAGAAATCGAAAGCTGCTAAAGAG 2637
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2567 CTCGACAAGACATGGGAAGTTGCTAAAGAAGAAGCCGAGAAGTCGAAAGCTGCTAAAGAG 2626
Query 2638 ATAATAAAAGCCTTGGCATCGAAGCTCCAAGCGAATAAAGAGAAACCGAGTAATCCTCTG 2697
|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2627 ATAATAAAAGCCTTGGCATCAAAGCTTCAAACGAATAAAGAGAAACCGAGTAATCCTCCG 2686
Query 2698 AAGACCGGCATTGCATGCAATCCTTCTCAAGTCTCACCAATCTTTGATGACTCAATGTCC 2757
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2687 AAGACCGGCATTGCGTGCAATCCTTCTCAAGTCTCACCAATCTTTGATGATTCAATGTCC 2746
Query 2758 ATTCCATACCTCACACCAATCACCACAGCTCGTTCACAACACGAAACCAAACAACAT-GT 2816
|||||||| |||||||||||||||||||||||||| || | ||||| |||||||| | ||
Sbjct 2747 ATTCCATATCTCACACCAATCACCACAGCTCGTTCCCACCCCGAAAACAAACAAC-TAGT 2805
Query 2817 AGAGAAATGTGTCACGAAATCCTCGAACCGTGACAGCAACATTAAGCTATTAGTAGATGC 2876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2806 AGAGAAATGTGTCACGAAATCCTCGAACCGTGACAGCAACATTAAGCTATTAGTAGATGC 2865
Query 2877 ATCGCCAGCCATCACAAGAACAGGGTATCTCCAAAACGAAACACAAGACTCGTCAGCAGA 2936
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2866 ATCGCCTGCCATCACAAGAACAGGGTATCTCCAAAACGAAACACAAGACTCAACAGCAGA 2925
Query 2937 ACAAGTTGAGCAATACGAGCCCGGTGTATATATAACTTTCACGGCCTTGCCTTGCGGTCA 2996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2926 ACAAGTTGAGCAATACGAGCCCGGTGTATATATAACTTTCACGGCCTTGCCTTGCGGTCA 2985
Query 2997 GAAGACGCTTAAACGCGTACGGTTTAGTCGGAAGAGGTTTTCAGAGAAGGAAGCACAAAG 3056
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2986 GAAGACGCTTAAACGCGTACGGTTTAGTCGAAAGAGGTTTTCAGAGAAGGAAGCACAAAT 3045
Query 3057 ATGGTGGGAAGAGAAGCAGGTTTTGGTCTATAACAAGTATGATGCTGAAATATGAAACTA 3116
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3046 ATGGTGGGAAGAGAAACAGGTTTTGGTCTATAACAAGTATGATGCTGAAGCATGAAACTA 3105
Query 3117 ACTTTTGAGTTTACTTCTTCGAATGTATTTTAATTCATTTTGATGTTTGTTAGTGAATAT 3176
||||| || | | | | ||||||||||||||||||| |||||||||| |||
Sbjct 3106 ACTTT-GA----A-T-----G--T--ATTTTAATTCATTTTGATGCTTGTTAGTGATTAT 3150
Query 3177 ATGTAATGCAGAAAAATTTCTTTATTTAAGaaaaaatgaaaaaaaaatactgggaaa-aa 3235
|| ||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||| ||
Sbjct 3151 ATCTAATGCAGAAAAATTTCTTTATTTAAGAAAATATGGAAAAAATATACTGG-AAATAA 3209
Query 3236 aaTTCCAATA--TATGAT-T-AATAAAAATATTTTAATGATCA 3274
|||||||||| |||||| | |||||||||||||| |||||||
Sbjct 3210 AATTCCAATAAATATGATATTAATAAAAATATTTTGATGATCA 3252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123649054677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5