BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65950.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475697 jgi|Araly1|475697|fgenesh2_kg.2__827__AT1G65950.1 2843 0.0
> Ahg475697 jgi|Araly1|475697|fgenesh2_kg.2__827__AT1G65950.1
Length=1829
Score = 2843 bits (1539), Expect = 0.0
Identities = 1743/1840 (95%), Gaps = 19/1840 (1%)
Strand=Plus/Plus
Query 6 AACCCAAAGAATCCACAAAAATGGAGATTCTCCGCAAATTCAAAATT-CTCGGGAGATCC 64
|||||||| |||| |||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 1 AACCCAAAAAATCAACAAAAATGGAGATTCTCCGCAAATTCAAATTTAC-CGGGAGATCC 59
Query 65 AAGTCTCCGATCTTTGCTTTCACAGTCACCGCCGGCCTAGCTCTAACCGCCGTCACTGGC 124
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 60 AAGTCTCCGATCTTTGCTTTCACAGTCA---CCGGCCTAGCTCTAACTGCCGTCACTGGC 116
Query 125 AGCGCCACCGCCGTGTCCATCTTCCGAGACTCACCTTCCAATAAAATAGCGACGGCTGTA 184
|||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||
Sbjct 117 GGCGCCACCGCCGTGTCTATCTTCCGAGACTCACCTTCCAATAAATTCGCGACGGCGGTA 176
Query 185 GAAGGCGTCGTCCGTTCTTCTCGCGCTATCTACTCCATCACTCTCACTGTCGCTGATTAC 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GAAGGCGTAGTCCGTTCTTCTCGCGCTATCTACTCCATCACTCTCACTGTCGCCGATTAC 236
Query 245 AAGTATA-CTTTGCGTAGATTACCAGCAGATTCCGATGAGTATCTTCAGAGATTAACAGA 303
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGTATAGC-TTGCGTAGATTACCAGCAGATTCCGATGAGTATCTTCAGAGATTAACAGA 295
Query 304 GGTTCATTCACGGTCTGCTAAACGAATTCTTAAACTGTGTGAAAGTAATAAAGGTTTCTA 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 296 GGTTCATTCACGGTCTGCTAAACGAATTCTTAAACTATGTGAAAGTAATAAAGGTTTTTA 355
Query 364 TGTGAAAGCTGGTCAGTTTGTGGCTACGTTGAAGCTCGTTCCGAAAGAGTACTCGTTGGC 423
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 356 TGTGAAAGCTGGTCAGTTTGTGGCTACGTTGAAGCTGGTTCCGAAAGAGTACTCTTTGGC 415
Query 424 TCTTTCCTCGTTGCAGGACAAGGCAGTTCCTTGTAACTTTCAAGAAATAAAGCAAGTTCT 483
|||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 416 TCTTTCGTCGTTGCAGGATAAGGCTGTTCCTTGTAATTTTCAAGAAATAAAGCACGTTCT 475
Query 484 GACAAGTAACTTGGGTCAAAATCTCACAGAGATATATTTATCTTTTGATGAGGAACCAAT 543
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 GACAAGTAATTTGGGTCAAAATCTCACAGAGATGTATTTATCTTTTGATGAGGAACCAAT 535
Query 544 TGCGGCAGCATCTATTGCTCAAGTACATCATGCTGTATTGAAGAACCACCAGGAAGTAGC 603
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 536 TGCGGCAGCATCTATTGCTCAAGTTCATCATGCTGTATTGAAGAATCACCAGGAAGTAGC 595
Query 604 AGTAAAGGTGCAATACCCTGGATTGAAGCAGAACATGATGTTAGATACAATGATAATGTC 663
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 596 AGTAAAGGTGCAATACCCTGGATTGAAGCAGAACATGAAGTTAGATACAACGATCATGTC 655
Query 664 ATTCCTTTCAAAATCAGTCGCAAAGATATTTCCAGAATACAGATTTGATTGGCTAGTTTA 723
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTTCCTTTCAAAATCAGTGGCAAAGATATTTCCAGAATACAGATTTGATTGGCTAGTTTA 715
Query 724 TGAATTCGTAAAGTCAATTTCCCAGGAACTTGATTTTCTACAGGAGGCAAAAAATTCAGA 783
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 TGAATTCGTAAAGTCAATTTCCCAGGAACTTGATTTTATACAGGAGGCAAAAAATTCAGA 775
Query 784 GAGAATTGCCAAAAACTTCAAACATAACAAAATGATTACAATTCCTACAGTGTTTTCGGA 843
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 776 GAGAATTGCCAAAAACTTCAAACATAACAAAATGATTACAATTCCTACGGTGTTTTGGGA 835
Query 844 GTTCACAACCACTCAAGTGCTGACAATGCAGTTTTGCAAGGGTTTCAAGGTTGACGATGT 903
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 836 GTTCACAACTACTCAAGTCCTGACAATGCAGTTTTGCAAGGGTTTCAAGGTTGATGATGT 895
Query 904 GGAATCCCTCAAAAGGACTAATGTAAGTCCAGAAAAGGTTGCTAAAGTATTGGTTGAAGT 963
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 GGAATCCCTCAAAAGCTCTAATGTAAGTCCACAAAAGGTTGCTAAAGTATTGGTTGAAGT 955
Query 964 GTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATAT 1015
Query 1024 ACTAGTTTCTCCTGAAGGCCAGAATGGCTTCTCTCTAGTTCTGCTAGACCATGGGAACTG 1083
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1016 ACTAGTTTCTCCTGGAGGCCAGAATGGTTTCTCTCTAGTTCTGCTAGACCACGGGAACTG 1075
Query 1084 TAAAACATTGGATGAAGCATTTAGGCGGGACTTTTGTCGGTTGTGGGAAGCTTTGATTCT 1143
||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1076 TAAAACATTGGATGAAGGATTTAGGCGGGACTTTTGTCGGCTGTGGGAGGCTTTGATTCT 1135
Query 1144 TCTAGACTCGAACAAGATACAAGAATTAGGGAAACAGTTTGGGGTTGGAAAATATGCCAA 1203
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 TCTTGACTCGAACAAGATACAAGAATTAGGGAAACAGTTTGGAGTTGGAAAATATGCCAA 1195
Query 1204 ATTCTTCCCCGTCATTTTCACCGGAAGAACTAGTGAAAGCAAATCAGGACTGGGAAAAGG 1263
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 ATTCTTCCCCGTCATTTTTACCGGAAGAACTAGTGACAGCAAATCAGGACTGGGAAAAGG 1255
Query 1264 AATGTCTATACAAGAGAGGCAAAAACTGAAACAGGAGCTCAAACTTCTGAGATTGGAAGA 1323
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1256 AATGTCTATACAAGAGAGGCAAAAACTGAAACAAGAGCTCAAGCTTCTGAGATTGGAAGA 1315
Query 1324 CGTAACAACTTTCATGGGGTCTCTTCCACCTGACTTTCTAACCGTTCTGCGAACAGATGG 1383
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1316 CGTAACAACTTTCATGGGGTCTCTTCCACCTGACTTTCTAACTGTACTGCGAACAGATGG 1375
Query 1384 ACTCATACGGTCAATCACTCTAAAGTTAGGTGCTCCACAACGGGTGAGACTACTCGCTTA 1443
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ACTCATACGTTCAATCACTCTGAAGTTAGGTGCTCCACAACGGGTGAGACTACTCGCTTA 1435
Query 1444 TGCGAAATATGCGGTATACGGGCTTGGCTACAAACCAACTTCTGAACCAGATTTTGTTGA 1503
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGCGAAATATGCTGTATACGGGCTTGGCTACAAACCAACTTCTGAACCAGATTTTGTTGA 1495
Query 1504 GAAGTCGGTAATCTCCAGATCTGTAATGTTAATGAGTTACCTTCGGTTACGTCTTATTCT 1563
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1496 GAAGTCGATAATCTCCAGATCTGTAATGTTAATGAGTTACCTTCGGTTACGTTTTATTCT 1555
Query 1564 AGAATTGATGGAACTCTTTCAAGGAATGAAGAAGCTAAAACATACCATATACGGTTTCTA 1623
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1556 GGAATTGATGGAACTATTTCAAGGAATGAAGAAGCTAAAACATACCATCTACGGTTTCTA 1615
Query 1624 TGGGCAACTCGTTGGCGGTATCACAAATAGTGTAAAGCGAATTACATGCAGCGTATGAAA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGGGCAACTCGTTGGCGGTATCACAAATAGTGTAAAGCGAATTACATGCAGCGTATGAAA 1675
Query 1684 ATATGATTATGATGTAGGAATTGGTTCAAAAGTGTCTTTGATATATTT-TTTGTATCGAA 1742
||| |||||||||||| |||||||| |||||||||| ||| |||||| ||| | | ||
Sbjct 1676 TTATTATTATGATGTAGAAATTGGTTTAAAAGTGTCTCTGAAATATTTATTTATTTGGA- 1734
Query 1743 ACGGA-ATAACG-GATATATGTAAA-TTTG--AGGTGAAACCAATGACTCTCTCGGTACA 1797
|||| |||| | || || | | |||| || |||||||||||||| ||||||||||
Sbjct 1735 -CGGATATAA-GTGA-ATC-G-ACTCTTTGGCAGCTGAAACCAATGACTTTCTCGGTACA 1789
Query 1798 ACGAACTTTAATCAAAGAAAAACAAAGAACCGACTTGACC 1837
|| |||||||||||||||||||| |||| ||||| |||||
Sbjct 1790 ACAAACTTTAATCAAAGAAAAACCAAGACCCGACCTGACC 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5