BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65970.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1 1129 0.0
Ahg475706 jgi|Araly1|475706|fgenesh2_kg.2__836__AT1G65980.1 773 0.0
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 564 4e-160
> Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1
Length=732
Score = 1129 bits (611), Expect = 0.0
Identities = 693/733 (95%), Gaps = 4/733 (1%)
Strand=Plus/Plus
Query 1 ATAAATTGTCCTAAGGCCTAAATACATTTTCGCACTCAAGTCAAACAAAACTCTTCTATT 60
||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATAAATTGTCCTAAGACCTAAATTCATTTTCCCTCTCAAGTCAAACAAAACTCTTCTATT 60
Query 61 TTCCTCTGTC-T--TCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGAT 117
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCCCTGTCTTCATCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGAT 120
Query 118 GTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAGACCGTCTCC 177
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 GTTGTACCAAACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAAACTGTCTCC 180
Query 178 GTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACT 240
Query 238 CCCACATGCAGTATGAGCCATGTGCCTGGATTCATTGGGAAAGCAGAGGAGCTGAAGTCA 297
||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 241 CCCACTTGCAGTATGAGCCATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCA 300
Query 298 AAGGGTATTGATGAGATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGG 357
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGGTGTTGATGACATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGG 360
Query 358 GGAAAAACATATCCAGAGAACAAGCATGTGAAGTTTGTAGCAGATGGGTCTGGAGAATAC 417
||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTAGCAGATGGTTCTGGAGAATAC 420
Query 418 ACGCATCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGG 477
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACACACCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGG 480
Query 478 AGATTCGCTTTGTTGCTTGATAACCTTAAGGTGACTGTAGCCAATGTTGAATCTGGTGGC 537
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 AGATTCGCTTTGTTGCTCGATAACCTTAAGGTGACTGTAGCTAATGTCGAATCTGGTGGC 540
Query 538 GAGTTCACGGTTTCCAGCGCAGAGGATATTCTCAAGGCTCTTTAAGAAACTTTATCGTTT 597
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||
Sbjct 541 GAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCTAAGAAACTTTATT-TTT 599
Query 598 CGCTTGTTGTATTGTGAATCTAAACTGCTGTATGTGAAGAAGAGATTTCTATAGCTTGAT 657
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| | ||
Sbjct 600 CGCTTGTTGTGTTGTGAATCTAAACCGCTGTATGTGAAGAAGAGAATTCTATAGCCTAAT 659
Query 658 TTCAATCAACAAGCATGTGTTTGACTTGCTTGGCATAATAAAGTATTTGATAAACGTTCA 717
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TTCAATCAACAAGCAAGTGTTTGACTTGCTTGGCATAATAAAGTATTTGATAATCGTTCA 719
Query 718 ATAACAATGGCTT 730
||||||| |||||
Sbjct 720 ATAACAACGGCTT 732
> Ahg475706 jgi|Araly1|475706|fgenesh2_kg.2__836__AT1G65980.1
Length=634
Score = 773 bits (418), Expect = 0.0
Identities = 548/610 (90%), Gaps = 12/610 (2%)
Strand=Plus/Plus
Query 46 CAAA-ACTCTTCTA-TTTTCCTCTGTCTTCAAAACCACAGAGATCTCT--TCATGGCTCC 101
|||| ||| ||| | |||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 31 CAAACACT-TTC-ACTTTTCCCCTTTCTTCAAATCCACAGAGATCTCTCCTCATGGCTCC 88
Query 102 AATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCA 161
||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 89 AATCACCGTCGGCGATGTTGTACCAGACGGAACAATCTCCTTCTTCGATGAGAATGATCA 148
Query 162 GCTTCAGACCGTCTCCGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 221
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 149 ACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 208
Query 222 TCCTGGTGCTTTCACTCCCACATGCAGTATGA-GCCATGTGCCTGGATTCATTGGGAAAG 280
||||||||||||||||||||| ||||| |||| || |||| ||||| ||||||| |||||
Sbjct 209 TCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGC-ATGTTCCTGGGTTCATTGAGAAAG 267
Query 281 CAGAGGAGCTGAAGTCAAAGGGTATTGATGAGATCATTTGCTTTAGTGTGAATGATCCAT 340
||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
Sbjct 268 CAGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAACGATCCGT 327
Query 341 TTGTGATGAAGGCATGGGGAAAAACATATCCAGAGAACAAGCATGTGAAGTTTGTAGCAG 400
|||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 328 TTGTGATGAAAGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTAGCAG 387
Query 401 ATGGGTCTGGAGAATACACGCATCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTC 460
|||| |||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||
Sbjct 388 ATGGTTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTCAAGGATAAGGGTC 447
Query 461 TTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTTGATAACCTTAAGGTGACTGTAGCCA 520
||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 448 TTGGTGTTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTCAAGGTGACTGTAGCCA 507
Query 521 ATGTTGAATCTGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATTCTCAAGGCTCTTT 580
|||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct 508 ATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCT 567
Query 581 AAGAAACTTTATCGTTTCGCTTGTTGTATTGTGAATCTAAACTGCTGTATGTGAAGAAGA 640
||||||| | | | || ||||||| ||||| || ||||| ||||||||||||| |||
Sbjct 568 AAGAAACGT-ACCACG-CGTTTGTTGTCTTGTGTATGTAAACCGCTGTATGTGAAGTAGA 625
Query 641 G-ATTTCTAT 649
| ||| ||||
Sbjct 626 GGATT-CTAT 634
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 564 bits (305), Expect = 4e-160
Identities = 397/442 (90%), Gaps = 4/442 (1%)
Strand=Plus/Plus
Query 94 ATGGCTCCAATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAA 153
|||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 1 ATGGCTCCAATTGCTGTCGGCGATGTTGTACCTGACGGAACCATCTCTTTCGTCGATGAC 60
Query 154 AATGATCAGCTTCAGACCGTCTCCGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTC 213
|||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 AATGATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAGAAAGTCATTCTC 120
Query 214 TTTGGTGTTCCTGGTGCTTTCACTCCCACATGCAGTATG-AGCCATGTGCCTGGATTCAT 272
|||||||| |||||||||||||||||||||||||| ||| || ||||||||||| |||||
Sbjct 121 TTTGGTGTCCCTGGTGCTTTCACTCCCACATGCAGCATGAAG-CATGTGCCTGGTTTCAT 179
Query 273 TGGGAAAGCAGAGGAGCTGAAGTCAAAGGGTATTGATGAGATCATTTGCTTTAGTGTGAA 332
|| |||||||||||| || || ||||| | ||||||||||||||||||||||||||||
Sbjct 180 TGAGAAAGCAGAGGAACTAAAATCAAATTATGTTGATGAGATCATTTGCTTTAGTGTGAA 239
Query 333 TGATCCATTTGTGATGAAGGCATGGGGAAAAACATATC-CAGAGAACAAGCATGTGAAGT 391
||| |||||||||||||||||||||||||| ||||| | | |||||||||||||||||||
Sbjct 240 TGACCCATTTGTGATGAAGGCATGGGGAAAGACATA-CGCTGAGAACAAGCATGTGAAGT 298
Query 392 TTGTAGCAGATGGGTCTGGAGAATACACGCATCTTCTTGGACTTGAGCTTGACCTTAAGG 451
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| || |
Sbjct 299 TTGTAGCAGATGGGTCTGGAAAATACACACATCTTCTCGGACTTGAGCTTGACCTCAAAG 358
Query 452 ACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTTGATAACCTTAAGGTGA 511
| ||||||| |||| ||||||||| ||| ||| || |||| | |||||||| |||||||
Sbjct 359 ATAAGGGTCATGGTGTTAGGTCAAAGAGTTTCACTCTGTTAATCGATAACCTCAAGGTGA 418
Query 512 CTGTAGCCAATGTTGAATCTGG 533
||||||||| |||||||||||
Sbjct 419 TTGTAGCCAAAGTTGAATCTGG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5