BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65980.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475706 jgi|Araly1|475706|fgenesh2_kg.2__836__AT1G65980.1 896 0.0
Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1 739 0.0
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 569 9e-162
> Ahg475706 jgi|Araly1|475706|fgenesh2_kg.2__836__AT1G65980.1
Length=634
Score = 896 bits (485), Expect = 0.0
Identities = 571/611 (93%), Gaps = 11/611 (2%)
Strand=Plus/Plus
Query 130 TAAGTCCAAACACTTTCA-TTTGTCTCCTTTCGTCAACTCCACAGAGA--TCTCCTCATG 186
|||||||||||||||||| ||| || |||||| |||| |||||||||| ||||||||||
Sbjct 25 TAAGTCCAAACACTTTCACTTT-TCCCCTTTCTTCAAATCCACAGAGATCTCTCCTCATG 83
Query 187 GCTCCAATTGCTGTCGGCGATGTCGTACCAGACGGAACTATCTCCTTCTTCGATGAGAAT 246
|||||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 84 GCTCCAATCACCGTCGGCGATGTTGTACCAGACGGAACAATCTCCTTCTTCGATGAGAAT 143
Query 247 GATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTT 203
Query 307 GGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGCATGTTCCTGGGTTCATTGAG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGCATGTTCCTGGGTTCATTGAG 263
Query 367 AAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGAGATCATTTGCTTTAGCGTGAACGAT 426
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 264 AAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAACGAT 323
Query 427 CCGTTTGTGATGAAAGCATGGGGAAAAACATACCCAGAGAACAAACATGTGAAGTTTGTA 486
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 324 CCGTTTGTGATGAAAGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTA 383
Query 487 GCTGATGGGTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTTAAAGACAAG 546
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 384 GCAGATGGTTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTCAAGGATAAG 443
Query 547 GGTCTTGGTGTTAGGTCAAGGAGATTTGCTCTGTTACTTGATGATCTCAAAGTGACTGTA 606
||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||
Sbjct 444 GGTCTTGGTGTTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTCAAGGTGACTGTA 503
Query 607 GCCAATGTCGAATCTGGTGGCGAATTCACAGTTTCCAGCGCCGATGATATCCTCAAGGCT 666
||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct 504 GCCAATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCT 563
Query 667 CTCTAAGAAATGTACCAC---TT-GT-GT-T-GTCTATGTAAACCGCTGTATGTGTAGTA 719
|||||||||| ||||||| || || || | || |||||||||||||||||||| ||||
Sbjct 564 CTCTAAGAAACGTACCACGCGTTTGTTGTCTTGTGTATGTAAACCGCTGTATGTGAAGTA 623
Query 720 GAGGATTCTAT 730
|||||||||||
Sbjct 624 GAGGATTCTAT 634
> Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1
Length=732
Score = 739 bits (400), Expect = 0.0
Identities = 525/585 (90%), Gaps = 10/585 (2%)
Strand=Plus/Plus
Query 158 TTCGTCAACTCCACAGAGATCTCCTCATGGCTCCAATTGCTGTCGGCGATGTCGTACCAG 217
||| |||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 71 TTCATCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGATGTTGTACCAA 130
Query 218 ACGGAACTATCTCCTTCTTCGATGAGAATGATCAACTTCAGACCGCCTCCGTTCACTCTC 277
||||||||||||| ||||||||||| |||||||| ||||| || | |||||||||||||
Sbjct 131 ACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAAACTGTCTCCGTTCACTCTA 190
Query 278 TCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACTTGCA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACTTGCA 250
Query 338 GCATGAAGC-ATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTT 396
| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GTATGA-GCCATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTT 309
Query 397 GATGAGATCATTTGCTTTAGCGTGAACGATCCGTTTGTGATGAAAGCATGGGGAAAAACA 456
||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 310 GATGACATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGGGGAAAGACA 369
Query 457 TACCCAGAGAACAAACATGTGAAGTTTGTAGCTGATGGGTCTGGAGAATACACACACCTT 516
|||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 370 TACCCAGAGAACGAGCATGTGAAGTTTGTAGCAGATGGTTCTGGAGAATACACACACCTT 429
Query 517 CTCGGACTTGAGCTTGACCTTAAAGACAAGGGTCTTGGTGTTAGGTCAAGGAGATTTGCT 576
|| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 430 CTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCT 489
Query 577 CTGTTACTTGATGATCTCAAAGTGACTGTAGCCAATGTCGAATCTGGTGGCGAATTCACA 636
|||| || ||| | || || ||||||||||| |||||||||||||||||||| |||||
Sbjct 490 TTGTTGCTCGATAACCTTAAGGTGACTGTAGCTAATGTCGAATCTGGTGGCGAGTTCACG 549
Query 637 GTTTCCAGCGCCGATGATATCCTCAAGGCTCTCTAAGAAA-TGTAC----CACTTGT-GT 690
||||| |||||||| ||||||||||||||||||||||||| | || | ||||| ||
Sbjct 550 GTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCTAAGAAACTTTATTTTTCGCTTGTTGT 609
Query 691 -T-GTCTATGTAAACCGCTGTATGTGTAGTAGAGGATTCTATAGC 733
| || || |||||||||||||||| || |||| ||||||||||
Sbjct 610 GTTGTGAATCTAAACCGCTGTATGTGAAGAAGAGAATTCTATAGC 654
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 569 bits (308), Expect = 9e-162
Identities = 397/441 (90%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 184 ATGGCTCCAATTGCTGTCGGCGATGTCGTACCAGACGGAACTATCTCCTTCTTCGATGAG 243
|||||||||||||||||||||||||| ||||| |||||||| ||||| ||| |||||||
Sbjct 1 ATGGCTCCAATTGCTGTCGGCGATGTTGTACCTGACGGAACCATCTCTTTCGTCGATGAC 60
Query 244 AATGATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTC 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AATGATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAGAAAGTCATTCTC 120
Query 304 TTTGGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGCATGTTCCTGGGTTCATT 363
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 121 TTTGGTGTCCCTGGTGCTTTCACTCCCACATGCAGCATGAAGCATGTGCCTGGTTTCATT 180
Query 364 GAGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGAGATCATTTGCTTTAGCGTGAAC 423
|||||||||||||| || || ||||| |||||||||||||||||||||||| |||||
Sbjct 181 GAGAAAGCAGAGGAACTAAAATCAAATTATGTTGATGAGATCATTTGCTTTAGTGTGAAT 240
Query 424 GATCCGTTTGTGATGAAAGCATGGGGAAAAACATACCCAGAGAACAAACATGTGAAGTTT 483
|| || ||||||||||| ||||||||||| |||||| | |||||||| ||||||||||||
Sbjct 241 GACCCATTTGTGATGAAGGCATGGGGAAAGACATACGCTGAGAACAAGCATGTGAAGTTT 300
Query 484 GTAGCTGATGGGTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTTAAAGAC 543
||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 301 GTAGCAGATGGGTCTGGAAAATACACACATCTTCTCGGACTTGAGCTTGACCTCAAAGAT 360
Query 544 AAGGGTCTTGGTGTTAGGTCAAGGAGATTTG-CTCTGTTACTTGATGATCTCAAAGTGAC 602
||||||| |||||||||||||| ||| ||| |||||||| | ||| | ||||| ||||
Sbjct 361 AAGGGTCATGGTGTTAGGTCAAAGAG-TTTCACTCTGTTAATCGATAACCTCAAGGTGAT 419
Query 603 TGTAGCCAATGTCGAATCTGG 623
||||||||| || ||||||||
Sbjct 420 TGTAGCCAAAGTTGAATCTGG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5