BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65985.1

Length=1456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315636 jgi|Araly1|315636|fgenesh1_pm.C_scaffold_2000669           499    2e-140


> Ahg315636 jgi|Araly1|315636|fgenesh1_pm.C_scaffold_2000669
Length=1254

 Score =  499 bits (270),  Expect = 2e-140
 Identities = 426/499 (85%), Gaps = 19/499 (4%)
 Strand=Plus/Plus

Query  943   GGTG-TTTCATTGCATGTGGAGTTAAAGAAAGGTTGCTTATCGATGCCGAG-TTTCTGGG  1000
             |||| |||| |||||||||||||| ||||||||| | ||| |||||| ||| |||| | |
Sbjct  765   GGTGTTTTCGTTGCATGTGGAGTTTAAGAAAGGTAGATTAACGATGCTGAGTTTTC-GTG  823

Query  1001  CTAAT-GATAGGACAGATATGATTCTAAGAAATGTAATTGCATTTGAGCAGTGCCA-GCA  1058
             |||||  || ||   |||||| |||||||||||||||| ||||||||||||||||| |  
Sbjct  824   CTAATCAAT-GGTTTGATATGGTTCTAAGAAATGTAATAGCATTTGAGCAGTGCCATGTT  882

Query  1059  TGGCATAATACCCTTTACCT-CGC-ACTACATACAATTCTTAAATGCCCTGA-TAGTTTC  1115
             |  | |||||||||||| || | | ||||| |||| |||||||||   || | ||  |||
Sbjct  883   TCTC-TAATACCCTTTA-CTAC-CAACTACGTACATTTCTTAAATTTTCTAATTA-CTTC  938

Query  1116  CGACAGAGACGTCGAGCTACTCAGCGAAAAAGGGGTGGTAATGAACAATATGGGTCGGCC  1175
             ||| |||||||||||| ||||||||||| ||||||||||||  |||||||| ||||||  
Sbjct  939   CGATAGAGACGTCGAGGTACTCAGCGAAGAAGGGGTGGTAACAAACAATATCGGTCGGGT  998

Query  1176  AAGCTTGGTGGTGGACATGGTGAACAAGTTAAAGGTTGGTGTGTACG-AAGGATACACCT  1234
              |||||||||||||||||||||||||||||| ||||||||||| | | | ||| ||||||
Sbjct  999   GAGCTTGGTGGTGGACATGGTGAACAAGTTACAGGTTGGTGTGAAAGTAGGGA-ACACCT  1057

Query  1235  CCCAATAC-TATGACATAGCCATA-GATCTCAAAGCTCACTATAAATCTCGAAGAAAGAG  1292
             |||||||| | | ||||||||  | ||||||| |||||||| ||||||||||||||||||
Sbjct  1058  CCCAATACTTCT-ACATAGCC-GAGGATCTCAGAGCTCACTGTAAATCTCGAAGAAAGAG  1115

Query  1293  GTGTTGGGCCACCCTCAGAAAAGTTTACTTCAGCGACTTGTGGACCGGCACAGCTACTTT  1352
             ||||||||| || ||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct  1116  GTGTTGGGCGACTCTCAGAAAAGTCTACTTCAGCGACTTATGGACCGGAACAGCAACTTT  1175

Query  1353  AGCCGCCGTGCTTCTCTTGCTTTTGACTCTGGTTGGGACGGTGGCTTCTGTCATCCAAGC  1412
             |||||| | | |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct  1176  AGCCGCAGCGTTTCTCTTGCTTTTGACTCTGGTCGGAACGGTTGCTTCTGTCATCCAAGC  1235

Query  1413  TTACGAAAGCTTCAAGTAA  1431
             |||| ||||||||||||||
Sbjct  1236  TTACAAAAGCTTCAAGTAA  1254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54469050350


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5