BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66060.1
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925747 jgi|Araly1|925747|scaffold_201308.1 1210 0.0
> Ahg925747 jgi|Araly1|925747|scaffold_201308.1
Length=1016
Score = 1210 bits (655), Expect = 0.0
Identities = 910/1031 (88%), Gaps = 26/1031 (3%)
Strand=Plus/Plus
Query 407 CTTCCCATGGATAATCAG-AAG-T--CGCCGAAGCAACCAACCTCCCAAGACTTCACCAA 462
|||||||||||||| | | ||| | || ||||||||||||||||| |||| |||| |||
Sbjct 1 CTTCCCATGGATAAGC-GAAAGATGCCGACGAAGCAACCAACCTCCGAAGAGTTCAACAA 59
Query 463 AGCCGCCTTCAAGCTTCTTGCGAATCCCCACGTTGAACCGACGGTGGAATTCATCGCCGC 522
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 60 AGCCGCCTTCAAGCTTCTTGCGAATCCCCACATCGAACCGACGGTGGAGTTCATCGCCGC 119
Query 523 CCTCACAAAGCCACCGGAGA-ATCCAGAAGATAAAGACATCAAGTTCTTCCGTTTCTGCG 581
||||| ||| ||| |||| | ||| ||||||| || | |||||||||||||| ||||
Sbjct 120 CCTCATAAATCCA-CGGAAATATCAAGAAGAT--AG--A--AAGTTCTTCCGTTTTTGCG 172
Query 582 TCGCCAATTACCCGGGATGCTTCTCCCTCAAGCTCATGCGTGTCTAT-TCCTCGAATGAT 640
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||| ||
Sbjct 173 TCGCCAATTACCCGGGATGCTTCTCCGTCAAGCTCATGTGTGTCT-TCGCCTCGAAAGAG 231
Query 641 CCACGAGTCCCATACCAGATCAGAGAGATTGCGATGATATTACTCCACGTTATCTTCATC 700
||||| ||| | ||| |||||||||||| ||| |||| || ||||||| ||||||||||
Sbjct 232 CCACGTGTCTCTTACGAGATCAGAGAGAGTGCAATGAGGTTTCTCCACGGTATCTTCATC 291
Query 701 ATAGAAGAAGCCTCTTTGAATTTGGCAGTGGTTCACATACTT-TCGCCTATACTCATATC 759
| ||||||||| ||| || |||| | ||||||||| || || ||| || ||||||||||
Sbjct 292 AAAGAAGAAGCTTCTATGGATTTTGAAGTGGTTCAGGTA-TTCTCGACTTTACTCATATC 350
Query 760 ATGCCTTGAAGAACAAGTTATCTC-GAACAACAGTTTAAAGATTCTTTCCATGCTCGTGA 818
||||||||||||||||||||||| ||| | |||||| |||| ||||| | |||||||||
Sbjct 351 TTGCCTTGAAGAACAAGTTATCTCGGAA-ACCAGTTTCAAGACTCTTTGCTTGCTCGTGA 409
Query 819 ACCGTGTCGCTTTCGAGATATTCACCATTCAGGAAGA-AACGTGGTATGACCTGCGTGAG 877
| ||||||||||||||||||||||||||||| ||| | ||||||| ||| | ||| | ||
Sbjct 410 AGCGTGTCGCTTTCGAGATATTCACCATTCAAGAA-ACAACGTGGCATGGCTTGCTTAAG 468
Query 878 TTTATCTCGTCTAAAGCGGAATC-AGAGTTTGCGAAAGCGGTTTCCGTGTTCAAGAGCTT 936
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 469 TTTATCTCGTCTAGAGCGGAA-CAAGAGTTTGCGAAAGCGGTTTCCGTGTTCAAGAGCTT 527
Query 937 GTCGATGCCTTTGGATGGAGAGGAGTTTTTGATTCCTCTCATGGATAATCTTCTTCCAGC 996
||||||||| ||||||| |||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 528 GTCGATGCCCTTGGATGAAGAGGAGTTTCTGATTCCTCTAATGGAGAATCTTCTTCCAGC 587
Query 997 GATCTTAAAACGTTTAGGTAACAAAGAGGAAGAGAGTTCGAGCCAGTGGGGTTTGGCCTT 1056
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 588 GATCTTGAAACGTTTAGGTGACAAAGAGGAAGAGAGTTCGAACCAGTGGGGTTTGGCGTT 647
Query 1057 TGTGGGTGGTTTCTGTGCGGCGGTTCACTTGTTGGAGACGACACGTGTTGATTTGGTGGA 1116
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 648 TGTGGGTGGTTTCTGTGCGGCGGTTCACTTGTTGGAGACGAGACGTGTTGCTTTAGTGGA 707
Query 1117 GAATCTTGCGAATGAGATGTTGAAATCGGTGAAGAGAGGAATGGAATTAGGGTTTCTTGG 1176
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 708 GAATCTTGCTAATGAGATGTTGAAATCGGTGAACAGAGGAATGGAATTAGGGTTTCTTTT 767
Query 1177 GAAAGCTCTTAGGGAAGTTGAAACCGCTGTAGTGGAACAATTATGGTGGTATTGTACTAC 1236
||||||||||| ||| |||||| |||| ||||||| || ||||||||||||||||||||
Sbjct 768 GAAAGCTCTTACGGATCTTGAAATCGCTATAGTGGAGCAGTTATGGTGGTATTGTACTAC 827
Query 1237 AGAATTCAGATTCGTATTGGGTTTGATT-AGTAGGATTGATGCGATTGTCACTGAGGAGA 1295
||| || | |||||| |||||||||||| || ||||||||||||||| |||||||| |||
Sbjct 828 AGAGTTTAAATTCGTCTTGGGTTTGATTCAG-AGGATTGATGCGATTATCACTGAGAAGA 886
Query 1296 CAGCGAAGAATGTGTTGCAAAGGATTAAGATAGTTGTGAAGAAGAAGATGCTTGAATATG 1355
||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 887 CAGCGAAGAATGTGTTGGAGAGGATTACGATGGTTGTGAAGAAGAAGATGCTTGAATATG 946
Query 1356 TTTAAGAGATTGGTAAATGGTGACGAAGATTGGCTTAATGAGAGCCATTGAATTTGGATG 1415
|| |||||||| ||| |||||| ||||||||||||||| || ||| |||| ||||| ||
Sbjct 947 TTGGAGAGATTGATAA-TGGTGATGAAGATTGGCTTAATCAGCGCCTTTGAGTTTGGTTG 1005
Query 1416 CTTCTTGCCCA 1426
|||| ||||||
Sbjct 1006 CTTCCTGCCCA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5