BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66070.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475711 jgi|Araly1|475711|fgenesh2_kg.2__841__AT1G66070.1 1410 0.0
> Ahg475711 jgi|Araly1|475711|fgenesh2_kg.2__841__AT1G66070.1
Length=982
Score = 1410 bits (763), Expect = 0.0
Identities = 940/1018 (92%), Gaps = 41/1018 (4%)
Strand=Plus/Plus
Query 35 TTTAACCTCTGAAGCAAAAACCAC--CACATCGGA-GA-TTTCTAATCCAACGAAAACGC 90
||||||||||||||| |||||||| ||||||||| || ||| |||||||| |||||||
Sbjct 1 TTTAACCTCTGAAGC-AAAACCACAACACATCGGAGGAGATTCCAATCCAACCAAAACGC 59
Query 91 TTCAATTTTCTTGCGATTTCTCTTCCTCTGCGAAAAACCCTTTTGGATTCAGACTTTCCT 150
|||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 60 TTCAATCGTCTTCCGATTTCTCTTCCTCTACGAAAAACCCTTTTGGATTCAGACTTTTCT 119
Query 151 CGGTTTACCAGTTGGACTCAGATAGAAGCTTATATCTGTACCTGATAATTTGCAGCAAAT 210
||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 120 CGGTTTACCAGTTGGACTCAGATAGCAGCTTATATTTGAATCTGATAATTTGCAGCAAAT 179
Query 211 ATGGATGACTGGGAGGACGAGAAAATTGCACCACTTCCAGCAAAAGTTGAGCTTAAAAGT 270
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGGATGACTGGGAGGACGAGCAAATTGCACCACTTCCAGCAAAAGTTGAGCTTAAAAGT 239
Query 271 AACTGggatgatgaagatgtggatgagaatgaaattaaggattcatgggaggatgatgat 330
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 AACTGGGATGATGAAGATGTGGATGAGAATGAGATTAAGGAGTCATGGGAGGATGATGAT 299
Query 331 gatgaaCCTGCTCAGCCGCCTGTTATAAATCCTGCTCCGGAGAAGGCTCCTAAGAAAGCA 390
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 300 GATGAACCTGCTCAGCCGCCTGTTGTAAAGCCTGCTCCGGAGAAGGCTCCTAAGAAAGCA 359
Query 391 GCCCCCAAAACTGTTGAAAAGAAGGGTAAAGCAGTCGAAGTTCCAAAGGAAGCACCAAAA 450
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 360 GCCCCCAAAACTGTTGAAAAGAAGGGTAAAGCAGTCGAAGTTCC-TA--AAG------AA 410
Query 451 GAAAAACCTCTAGATCCTATAGCGGAGAAACTTCGCCAGCAGAGGCTTGTTGAGGAAGCC 510
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 G---AACCTCTAGATCCTATAGCGGAGAAACTTCGCCAGCAGAGGCTTGTTGAGGAAGCC 467
Query 511 GACTACCGGGCAACTGCTGAGCTCTTTGGAGTGAAGGATGATGACAAAAACCTTGATATG 570
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 468 GACTACCGGTCAACTGCTGAGCTCTTTGGAGTGAAGGATGAAGAAAAAAACCTTGATATG 527
Query 571 TTTATCCCCAAGTCTGAAAGCGATTTTTTGGAATATGCTGAAATGATTTCTCATAGGATT 630
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 528 TTTATCCCTAAGTCTGAAAGCGATTTCTTGGAATATGCTGAAATGATTTCTCATAGGATT 587
Query 631 AAACCATATGAGAAAAGTTATCACTATATAGCGCTGCTCAAAACAATCATGAGACTTTCA 690
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 588 AAACCATATGAGAAAAGTTATCACTATATTGCGCTGCTCAAAACAATCATGAGACTTTCA 647
Query 691 TTGACCAACATGAAAGCAGCTGATGTTAAAGATGTTGCTTCGTCCATTACAACGATAGCa 750
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTGACCAACATGAAAGCAGCAGATGTTAAAGATGTTGCTTCGTCCATTACAACGATAGCA 707
Query 751 aatgaaaaactaaaggcagagaaagaagctgctgcgggaaaaaagaaaggtggaaagaag 810
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 708 AATGAAAAACTAAAGGCAGAGAAAGAAGCTGCTGCAGGCAAAAAGAAGGGTGGAAAGAAG 767
Query 811 aaaCAACTTATTGTAGATAAGGCCAATGACGATCTAGTGGCTGGTCCTTATGATGCCATG 870
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 768 AAACAACTTATTGTAGATAAACCCGATGACGATCTAGTGGCTGGTCCTTATGATGCCATG 827
Query 871 GATGACTTCGACTTCATGTAGATTAAAAGAGCTTTTTGAGCAAATGCAAATTGGATTTGT 930
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 828 GACGACTTCGACTTCATGTAGATTAAA-GAGCTTTTTGAGCAAATGCAAATTGGATT-GT 885
Query 931 CCAGCGTCTATTTTATCATTTATCTATCACTCAAAAGAAACACATTTTTCTTAATTTTGG 990
||||||||||||||||||||||||| | | | |||||||||||
Sbjct 886 CCAGCGTCTATTTTATCATTTATCT-T---T-------------T----CTTAATTTTGG 924
Query 991 TTTGAATAGAGCAAGAAGA-GCCAAATTTCTGGTTGCGGAAATATATAGTTGGAACAT 1047
|| |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 925 TTCGAATAGAGCAAGAAGAAGCCAAATTTCTTGTTATGGAAATATATAGTTGGAACAT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5