BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66080.1
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475712 jgi|Araly1|475712|fgenesh2_kg.2__842__AT1G66080.1 1155 0.0
> Ahg475712 jgi|Araly1|475712|fgenesh2_kg.2__842__AT1G66080.1
Length=774
Score = 1155 bits (625), Expect = 0.0
Identities = 713/756 (94%), Gaps = 3/756 (0%)
Strand=Plus/Plus
Query 90 aaaaaaaatcaaaa--cctttcaaaaaaaccaaaaaC-TCAACAATGTTCGGAGTCGTCT 146
|||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 19 AAAAAAAATCAAAATTCCTAAAAAAAAAACCCTAAACATCAACAATGTTCGGAGTCGTCT 78
Query 147 TCCCCAATCGAAGTTTCCCAATAGACATCTCAACCTTCACTCAAATCGACACATTCCACT 206
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 79 TCCCCAATCGAAGTTTCCCACTCGACATCTCAACCTTCACTCAAATCGACACATTCCACT 138
Query 207 GGGTTCTCGACATGAACCACTTCGTCGGTGAAGCTTATGATCAAATCTCAGAGATGTGTA 266
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 139 GGGTTCTCGATATGAACCATTTCGTCGGTGAAGCATATGATCAAATCTCAGAGATGTGTA 198
Query 267 TCTTCTTGTTAAACAATTTCAATCTTCCACCAGATAAAGCTTTAGCTGTTTATGTTCAAT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 199 TCTTCTTGTTAAACAATTTCAATCTTCCACCAGATAAAGCTTTAGCTGTTTATCTCCAAT 258
Query 327 CTCCAGGATCAGCTTTTGTGTTCTGTGGTGCTGTAACTTTAGCTAGACCTTCTGCTGTTT 386
||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |
Sbjct 259 CTCCAGGATCAGCTTTTGTCTTCTGTGGTGCTGTTACTTTAGCTAGACCATCAGCTGTGT 318
Query 387 TATCACTTCAATGGCCTGAACCTGGTAGTGCAGCGAAGATGCAACTCACGGCGGGTGATT 446
| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 319 TGTCTCTTCAATGGCCTGAACCTGGTAGTGCTGCTCAGATGCAACTCACGGCGGGTGATT 378
Query 447 CGAGTTCCTTATCGGCGAAGATCGGTGTTTCGGTGGAGGATGTAGCAGCGTTGAGGTCGT 506
||||||| ||||||||||| |||||||||||||| |||||| || | |||||||||||||
Sbjct 379 CGAGTTCTTTATCGGCGAAAATCGGTGTTTCGGTTGAGGATATAACGGCGTTGAGGTCGT 438
Query 507 TGGATGTTGTTGCGGAGAGGAGGATTGAGAAATTGGCTATGAAAGTTGGAGAGAATTTGT 566
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 439 TGGATGTTGTGGCGGAGAGGAGGATTGAGAAATTAGCTATGAAAGTTGGAGAGAATTTGT 498
Query 567 TTAACTTTATGCAGTCTTTTTGTGGTGTTGATGGAAGTAAATTGGTTGTTCCTATGGATA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TTAACTTTATGCAGTCTTTTTGTGGTGTTGATGGAAGTAAATTGGTTGTTCCTATGGATA 558
Query 627 TTTTGGATCGTTGGTTTAAGAAGTTTCAGGAGAAAGCTAAACGTGATCCTGATTTCCTCA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TTTTGGATCGTTGGTTTAAGAAGTTTCAGGAGAAAGCTAAACGTGATCCTGATTTCCTCA 618
Query 687 AAAGCTTTGCTTTGTAAGGTTAGCGTTTTTGTAACATTTGATCTTGTGGTTCTATGTGAT 746
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||
Sbjct 619 AAAGCTTTGCTTTGTAAGGTTAGAGTTTTTGTAACATTTGATCTTTTGGTTTTATATGAT 678
Query 747 GAATTGAACAAGAGATTGTAGTTTTACTTTGTTTGTCAATGTTTATTAACTAGTTGATCA 806
|||||||| |||| ||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 679 GAATTGAAGAAGACATTGTAGTTTTACTTGGTTTGTCAATGTTCATTAACTACTTGATCA 738
Query 807 TACTCTGCTTTTAAGCAATTTAAAGTGTTGAACTTT 842
|||||||||||||||||||| |||||||||||||||
Sbjct 739 TACTCTGCTTTTAAGCAATTGAAAGTGTTGAACTTT 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31146423189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5