BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66090.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908088 jgi|Araly1|908088|Al_scaffold_0002_1169 881 0.0
Ahg907021 jgi|Araly1|907021|Al_scaffold_0002_102 612 3e-174
Ahg474812 jgi|Araly1|474812|fgenesh2_kg.1__4766__AT1G56540.1 549 2e-155
Ahg493465 jgi|Araly1|493465|fgenesh2_kg.7__2898__AT4G14370.1 331 8e-90
Ahg914952 jgi|Araly1|914952|Al_scaffold_0001_5206 231 9e-60
> Ahg908088 jgi|Araly1|908088|Al_scaffold_0002_1169
Length=1176
Score = 881 bits (477), Expect = 0.0
Identities = 599/658 (91%), Gaps = 7/658 (1%)
Strand=Plus/Plus
Query 655 AAGGATTTTGATGAAATGGTGGGAATTAAAGCTCATTTGACGAAAATTGAGTCTTTGCTA 714
|||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 337 AAGGATTTTGATGACATAGTGGGACTTAAAGCTCATTTGACGGAAATTGAGTCTTTGCTA 396
Query 715 TCTTTAGATTATGATAAAGTTAAGATCGTTGGGATCTCCGGTCCTGCAGGCATTGGTAAG 774
| | |||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 397 TATCTAGACTATGATAAAGTTAAGATGGTTGGAATCTCTGGTCCGGCAGGCATTGGTAAG 456
Query 775 AGTACCATTGCCAGAGCCTTACATAACCTACTCTCTAGCAGTTTTCATCTTAGTTGTTTT 834
||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||| |
Sbjct 457 AGTACCATTGCTAGAGCCTTACATAGCCTACTCTCAAGCAGTTTTCATCATAGTTGTTAT 516
Query 835 ATGGAAAACCTTATTAGCCAAAGCAACCCCCATAGTTCTCTAGAGTATAGTTCGAAATTG 894
||||||||||||| ||| ||||||| || ||||| ||||||||||| |||||||||||
Sbjct 517 ATGGAAAACCTTA-TAG--AAAGCAAAGCCAATAGTGCTCTAGAGTATCGTTCGAAATTG 573
Query 895 AGTTTACAAGAGCAACTTCTCTCACAAGTTTTGAACGAAAAGGACATTAGGATACGCCAT 954
|||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 574 AGTTTACAAGAGCAGCTTCTTTCGCAAGTTTTGAACCTAAAGGACATTAGGATACGCCAT 633
Query 955 TTAGGTGCGATACAAGAAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACGTG 1014
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTAGGTGCGATACGCGAAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACGTG 693
Query 1015 ACG-AGTCTAGAGCAACTAGAGGTTTTGGCTAATATCAAGTGGTATGGTCCTGGAAGTAG 1073
| | || | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 694 AAGGAGGC-AGAGCAACTAGAGGTTTTGGCTAATATCAAGTGGTTTGGTCCTGGAAGTAG 752
Query 1074 GATCATAGTAATCACTAAAAAGAAAGATATTTTGGTGCAACATGGTATCTGTGATATATA 1133
|||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 753 AATCATAGTGATCACTGAAAACAAAGATATTTTGGTGCAACATGGTATATGTGATATATA 812
Query 1134 CCATGTGGGTTTTCCAACAGATGCAGATGCTCTAAAGATCTTTTGTCTATCTGCTTATAG 1193
|||||||||||||||| || | | |||||||||||||||||||||||||| ||||| |||
Sbjct 813 CCATGTGGGTTTTCCATCACAAGAAGATGCTCTAAAGATCTTTTGTCTATATGCTTTTAG 872
Query 1194 ACAAACCTCTCCACCTGATGGATCTATGAAAATTCATGAGTGTGAAATGTTTATAAAA-A 1252
|||||||||||||||| |||||| ||||||| ||||||| ||||||||| || ||||| |
Sbjct 873 ACAAACCTCTCCACCTTATGGATATATGAAACTTCATGAATGTGAAATGGTTGTAAAATA 932
Query 1253 TTTGTGGCAATCTTCCATTGCATCTACATGTTTTGGGGTCGGCGCTTCGGGGAAGGAG 1310
|| |||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 933 TT-GTGGCAGTCTTCCATTGAATCTACATGTTTTGGGGACGGCGTTTCGGGGAAGGAG 989
Score = 438 bits (237), Expect = 5e-122
Identities = 307/341 (90%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 241 ATGTTTGATGATCAAAGGATGGAGAGAAGCCAAACCCTTGCCCCTACTCTCACGCAGGCG 300
||||| ||||| ||||||| ||||||||||||||| | |||||| ||||||| ||||||
Sbjct 1 ATGTTCAATGATGAAAGGATCGAGAGAAGCCAAACCATCGCCCCTGCTCTCACACAGGCG 60
Query 301 ATTAGAGAATCGAAGATCTACATCGTCTTGCTCTCGAAGAACTATGCTTCATCGAGCTGG 360
||||||||||||| ||| | ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 61 ATTAGAGAATCGAGGATATCCATCGTCGTGCTCTCGAAGAACTATGCTTCATCAAGCTGG 120
Query 361 TGTCTTGATGAGCTATTGGAGATTTTAAACTGCAAAGAAAAAAG-AGGACAGAGAGTGAT 419
|||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||
Sbjct 121 TGTCTTGATGAGCTATTGGAGATTTTGAACTGCAAAGAAAAC-GCAGGACAGATAGTGAT 179
Query 420 GACAATCTTCTACGGCGTAAATCCATCTGATGTGCGGAAACAAACCGGAGAATTTGGAAT 479
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 180 GACAATCTTCCACGGAGTAAATCCATCTGATGTGCGCAAACAAACCGGAGAATTTGGGAT 239
Query 480 CGCTTTCAACGAAACTTGTGCTCGTAAAACAGAGGAGGAGAGGAGAAAATGGAGCCACGC 539
||||||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| ||
Sbjct 240 CGCTTTCAAAGAAACTTGTGCTCGTAAAACAAAGGAGGAGATGATAAAATGGACCCATGC 299
Query 540 TTTGACCTGTGTGGGCAACATAACCGGAGTACACGTCCAAG 580
||||| || ||||||||||||| | ||||||||| || |||
Sbjct 300 TTTGAACTTTGTGGGCAACATAGCTGGAGTACAC-TCGAAG 339
> Ahg907021 jgi|Araly1|907021|Al_scaffold_0002_102
Length=2829
Score = 612 bits (331), Expect = 3e-174
Identities = 881/1138 (77%), Gaps = 72/1138 (6%)
Strand=Plus/Plus
Query 113 cttcttctt-tatcttctccttcacctt-GC-ACATGGAGATA-CATGACTTTCACGAGC 168
||||||||| | |||||| |||| ||| || || |||| ||| || | | ||| |||||
Sbjct 5 CTTCTTCTTCT-TCTTCTTCTTC-GCTTCGCAAC-TGGACATACCACGTC-TTCGCGAGC 60
Query 169 TTCCATGGACCAGATGTCCGCAACACATTTCTTAGTCATTTGA-GGAAACAGTTTAACAC 227
|| |||||| ||| ||||| || |||||||| |||||| | | | |||||||||| |
Sbjct 61 TTTCATGGAGAAGACGTCCGTAAAACATTTCTGAGTCATAT-ACGCAAACAGTTTATCTG 119
Query 228 CAATGGAATTACGATGTTTGATGATCAAAGGATGGAGAGAAGCCAAACCCTTGCCCCT-- 285
|||||| || |||||||| ||||||||| |||| ||||| || ||||| || |||||
Sbjct 120 CAATGGGATCACGATGTTCGATGATCAAGGGATCAAGAGAGGCAAAACCATTACCCCTGA 179
Query 286 ACTC-TCACGCAGGCGATTAGAGAATCGAAGATCTAC-ATCGTCTTGCTCTCGAAGAACT 343
|||| | || ||| |||||||||||||| ||||| | ||| || | ||||| || || |
Sbjct 180 ACTCAT-AC-AAGG-GATTAGAGAATCGAGGATCT-CGATCATCGTACTCTCAAAAAATT 235
Query 344 ATGCTTCATCGAGCTGGTGTCTT-GATGAGCTATTGGAGATTTTAAACTGCAAAGAAAAA 402
||||||| || ||||||||| || ||||||||| ||||||| || || |||| ||| |
Sbjct 236 ATGCTTCTTCCAGCTGGTGT-TTGGATGAGCTACTGGAGATATTGAAGTGCAGGGAAGAT 294
Query 403 AGAGGACAGAGAGTGATGACAATCTTCTACGGCGTAAATCCATCTGATGTGCGGAAACAA 462
| ||||| | |||||||||| |||||||||| ||| || ||||||||||||||||||||
Sbjct 295 ATTGGACAAATAGTGATGACAGTCTTCTACGGAGTAGATACATCTGATGTGCGGAAACAA 354
Query 463 ACCGGAGAATTTGGAATCGCTTTCAACGAAACTTGTGCTCGTAAAACAGAGGAGGAGAGG 522
|||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 355 ACCGGAGAATTTGGGATTGCTTTCAACAAAACTTGTGCTGGTAAAACGGAGGAGGAGAGC 414
Query 523 AGAAAATGGAGCCACGCTTTGACCTG-TG-TGGGCAACATAACCGGAGTACACGTCCAAG 580
|||| ||||||||| ||||||||| | || || ||||||| | |||||| || || ||
Sbjct 415 AGAAGATGGAGCCAAGCTTTGACC-GATGCTGC-CAACATAGCAGGAGTAGACTTCAAAA 472
Query 581 ACAGGGACGATGAGGCA-AACATGATCGAGAAAATTGCAA-CTGATGTCTCAGAAA-AAC 637
|| | | ||||||| || ||||| ||| | ||||||| | |||| || || |||
Sbjct 473 ACTGCAAAAATGAGGCGGAA-ATGATTGAGGAGATTGCAAACC-ATGTTTCT-AACCAAC 529
Query 638 TGAATGCT-ACAGAGTCAAAGGATTTTGATGAAATGGTGGGAATTAAAG-CTCATTTGAC 695
|||||| | ||| ||| ||||||||||||| ||||| ||| | | || |||||||||
Sbjct 530 TGAATG-TGACACCGTCTAAGGATTTTGATGGCATGGTAGGACT-AGAGGCTCATTTGA- 586
Query 696 GA-AAATTGAGTCTTTGCTATCTTTAGATT-ATGATAAAGTT-AAGATCGTTGGGATCTC 752
|| |||| |||||||||||| |||||||| | | | |||| || || ||||| ||||
Sbjct 587 GAGAAATGGAGTCTTTGCTAGATTTAGATTCA-GTTGGAGTTCAA-ATGGTTGGAATCTA 644
Query 753 CGGTCCTGCAGGCATTGGTAAGAGTACCATTGCCAGAGC-CTTACATAACCTACTCTCTA 811
||||||||| ||||||||||||||||||||||| ||||| || ||||| | ||| ||||
Sbjct 645 CGGTCCTGCGGGCATTGGTAAGAGTACCATTGCTAGAGCTCT-ACATAGTCGACTTTCTA 703
Query 812 GCAGTTTTCATCTTAGTTGTTTTATGGAAAACCTTATTAGCCAAAGCAACCCCCATAG-T 870
|| ||||| | || ||||||| |||| | || || | ||||| || | || | |
Sbjct 704 ATAGGTTTCAACATAATTGTTTTGTGGACATCCA-ATGGG--AAAGCTTCCGC-ATTGGT 759
Query 871 TCTC-TAGAGTATAGTTCGAAATTGAGTTTACAAGAGCAACTTCTCTCACA-AGTTTTGA 928
| | | || ||| ||| ||| || |||||||||| || |||| ||| | | |||||
Sbjct 760 TTTGAT-GATTATGGTTTGAAGCTGCGTTTACAAGAAAAATTTCTTTCAAATA-TTTTGG 817
Query 929 ACGAAAA-GGACATTAGGATACGCCATTTAGGTGCGATACAAGAAAGGCTA-CACGACCA 986
|| || |||| | |||||| ||||||||||||| ||| ||||| ||||| | | | |
Sbjct 818 ACCTAAGTGGAC-TGAGGATAAGCCATTTAGGTGCCATAAAAGAACGGCTATC-CAAGCT 875
Query 987 GAGGGTTCTTATCATTCTTGATGACGTGA-CGAGTCTAGA-GCAACTAGAGGTTTTGGCT 1044
|||||| ||||||||||||||||| |||| | | | | || ||||||||||| |||||
Sbjct 876 GAGGGTGCTTATCATTCTTGATGATGTGAACCA-TAT-GAAGCAACTAGAGGCGTTGGCA 933
Query 1045 AAT-AT-CAA-GTGGTATGGTCCTGGAAGTAGGATCATAGTAATCA-CTA-AAAAGAAAG 1099
||| | | | ||||| |||||||||||||||||| || || | || | | |||| ||||
Sbjct 934 AATGAAACTACGTGGTTTGGTCCTGGAAGTAGGATTATTGTGA-CAAC-AGAAAACAAAG 991
Query 1100 ATATTTTGG-TGCAACATGGTATCTGTGATATATACCATGTGGGTTTTCCAACAGATGCA 1158
| || || | |||||||||||| ||| ||||||||||| |||||| | |||| |
Sbjct 992 AGCTTCTGCAT-CAACATGGTATCAACAATACGTACCATGTGGGGTTTCCATCTGATGAA 1050
Query 1159 GATGCTCTAAAGATCTTTTGTCTATCTGCTTAT-AG-ACAAACCTCTCCACCTGATGG 1214
| || || |||||||| |||| || ||||| | || | ||| || ||||| | ||||
Sbjct 1051 AAAGCGCTCAAGATCTTATGTCGATATGCTT-TCAGGA-AAAGCTATCCACATAATGG 1106
> Ahg474812 jgi|Araly1|474812|fgenesh2_kg.1__4766__AT1G56540.1
Length=2883
Score = 549 bits (297), Expect = 2e-155
Identities = 590/726 (81%), Gaps = 41/726 (6%)
Strand=Plus/Plus
Query 583 AGGGACGATGAGGC-AAACATGATCGAGAAAATTGCAACTGATGTCTCAGAAAAACTGAA 641
|||||| |||| || ||| ||||| ||||| |||||| ||||| ||||| ||||| ||
Sbjct 22 AGGGACAATGAAGCGAAA-ATGATAGAGAAGATTGCATGAGATGTTTCAGATAAACTCAA 80
Query 642 TGCTACA-GAGTCAAAGGATTTTGATGAAATGGTGGGAATTAAAGCTCATTTGACG-AAA 699
|| |||| | || | ||||||||||| ||||| ||| || |||||||||||| | |||
Sbjct 81 TGTTACACCA-TCTAGGGATTTTGATGGCATGGTTGGACTTGAAGCTCATTTGA-GAAAA 138
Query 700 ATTGAGTCTTTGCTAT-CTTTAGATTATGATAAAGTTAAGATCGTTGGGATCTCCGGTCC 758
|| ||||||||||| | ||||||| ||||| || |||||| ||||| ||||| |||||
Sbjct 139 ATGGAGTCTTTGCT-TGATTTAGATAATGATGGAGCTAAGATTGTTGGAATCTCTGGTCC 197
Query 759 TGCAGGCATTGGTAAGAGTACCATTGCCAGAGCCTTACATAAC-CTACTCTCTAGCAGTT 817
||||||||||||||||||||||||||| ||||| ||||||| | ||| |||| ||| |
Sbjct 198 TGCAGGCATTGGTAAGAGTACCATTGCTAGAGCTTTACATAGTGC-ACTATCTACCAGGT 256
Query 818 TTCATCTTAGTTGTTTTATGGAAAACCTT-ATTAGCCAAAGCAACCCCCATAGTTCTC-T 875
|||| | || |||||||||||| |||||| || | ||||||| || | | | |
Sbjct 257 TTCAGCATAATTGTTTTATGGACAACCTTCAT--G--AAAGCAATAAG-ATTGGTATTGT 311
Query 876 AGAGTATAGTTCGAAATTGA-GTTTACAAGAGCAACTTCTCTCACAAG-TTTTGAACGAA 933
|||||| ||| ||| || | | |||||||| |||||||| ||| ||| |||||||| |
Sbjct 312 TGAGTATGGTTTGAAGTT-ACGCTTACAAGAACAACTTCTTTCA-AAGATTTTGAACCTA 369
Query 934 AA-GGACATTAGGATACGCCATTTAGGTGCGATACAAGAAAGGCTACACGACCAGAGGGT 992
| || |||||||||| |||||| ||||| |||||||||||||||||||||||| || ||
Sbjct 370 GATGG-CATTAGGATAGGCCATTCAGGTGTGATACAAGAAAGGCTACACGACCAAAGAGT 428
Query 993 TCTTATCATTCTTGATGACGTG-ACGAGTCTAGAGCAACTAGAGGTTTTGGCTAATATCA 1051
|||||||||||||||||| ||| | ||||||||| |||||||||| ||||||||||||||
Sbjct 429 TCTTATCATTCTTGATGATGTGGA-GAGTCTAGATCAACTAGAGGCTTTGGCTAATATCA 487
Query 1052 AGTGGTATGGTCCTGGAAGTAGGATCATAGTAATCACTAAAAAGAAAGATATTTTGGTGC 1111
||||| |||||| ||||||||| ||||||| | |||| |||| ||||| |||||| ||
Sbjct 488 TGTGGTTTGGTCCAGGAAGTAGGGTCATAGTGACCACTGAAAACAAAGAGATTTTGCAGC 547
Query 1112 AACATGGTATCTGTGATATATACCATGTGGGTTTTCCAACA-G-ATGCAGATGCTCTAAA 1169
||||||||||| |||||||||||||||||||||||||| || | | | ||| ||| |||
Sbjct 548 AACATGGTATCAGTGATATATACCATGTGGGTTTTCCATCAAGTA-G-AGAAGCTTTAAT 605
Query 1170 GATCTTTTGTCTATCTGCTTATAGACAAACCTCTCCACCTG-ATGGATCTATGAAAATTC 1228
|||||||||||||||||||| | |||||| ||||||||||| | || | |||| | | |
Sbjct 606 GATCTTTTGTCTATCTGCTTTTCGACAAATCTCTCCACCTGGAGGGTT-TATGGA--T-C 661
Query 1229 ATGAGTGT-GAAATGTTTATAAAAATTTGTGGCAATCTTCCATTG-CATCTACATGTTTT 1286
|| | || | | ||| ||| ||||||| |||||||||||| | ||||||||||||
Sbjct 662 TTGCG-GTCGGA--GTTGC-AAAGCTTTGTGGTAATCTTCCATTGGC-TCTACATGTTTT 716
Query 1287 GGGGTC 1292
||||||
Sbjct 717 GGGGTC 722
> Ahg493465 jgi|Araly1|493465|fgenesh2_kg.7__2898__AT4G14370.1
Length=5602
Score = 331 bits (179), Expect = 8e-90
Identities = 530/695 (76%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 337 AAGAACTATGCTTCATCGAGCTGGTGTCTTG-ATGAGCTATTGGAGATTTTAAACTGCAA 395
|||||||||||||| ||||| ||||| |||| ||||| | ||||||||| | || |||||
Sbjct 10 AAGAACTATGCTTCTTCGAGTTGGTG-CTTGAATGAGTTGTTGGAGATTATCAAGTGCAA 68
Query 396 AGAA-AAAAGAGGACAGAGAGTGATGACAATCTTCTACGGCGTAAATCCATCTGATGTGC 454
||| | | ||||| | ||||||||| | || ||||| ||| |||||||||||||||
Sbjct 69 GGAAGCTATG-GGACAAATAGTGATGACTGTTTTTTACGGAGTAGATCCATCTGATGTGC 127
Query 455 GGAAACAAACCGGAGAATTTGGAATCGCTTTCAACGAAACTTGTGCTCGTAA-AACAG-A 512
||||||| || |||||||| || | |||||| | ||||| ||| |||| || || | |
Sbjct 128 GGAAACAGACAGGAGAATTCGGGAGGGCTTTCGATGAAACGTGTTCTCG-AAGTAC-GAA 185
Query 513 GGAGGAGAGGAGAAAATGGAGCCACGCTTTGACCTG-TGTGGGCAACATAACCGGAGTAC 571
||| ||||| | | |||||| || ||||||| | | ||||||||||||| | |||| ||
Sbjct 186 AGAGAAGAGGCGTAGATGGAGTCAAGCTTTGAAC-GATGTGGGCAACATAGCTGGAGAAC 244
Query 572 ACGTCC-AAGACAGGGACGATGAGGCAAACATGATCGAGAAA-ATTGCAACTGATGTCTC 629
|| ||| || || ||||| ||||| |||| ||||| || ||| ||| | | ||| | ||
Sbjct 245 ACTTCCTAA-ACTGGGACAATGAGTCAAAAATGATTGA-AAAGATTTCTAGAGATATTTC 302
Query 630 AGAA-AAACTGAATGCTACAGAGTC-AAAG-GATTTTGATGAAATGG-TGGGAATTAAAG 685
| || | | | ||| ||||| | || || ||||||||||| |||| |||| || |||
Sbjct 303 A-AACATATTAAATACTACA-A-TCTCTAGAGATTTTGATGATATGGTTGGG-CTTGAAG 358
Query 686 CTCA-TTTGACGAAAATTG-AGTCTTTGCTATCTTTAGATTAT---GATAAAGTTAAGAT 740
| || || || | ||| || ||| |||| || |||||||||| ||| || || |||
Sbjct 359 CACACTTGGA-GGAAA-TGAAGTATTTGTTAGATTTAGATTATGAGGATGGAGCTATGAT 416
Query 741 CGTTGGGATCTCCGGTCCTGCAGGCATTGGTAAGAGTACCATTGCCAGAGCCTTACATAA 800
||||| || | ||||||||||| |||||||||| ||||||||| ||||| ||| |||
Sbjct 417 AGTTGGAATATGTGGTCCTGCAGGAATTGGTAAGACTACCATTGCTAGAGCTTTATATAG 476
Query 801 CCTACTCTCTAGCAGTTTTCATCTTAGTTGTTTTATGGAAAACCTTATTAGCCAAAGCAA 860
||||||| || ||||| || ||||||||||||||||| || | |||| |||
Sbjct 477 TTTACTCTCCAGTAGTTTCCAGCTTAGTTGTTTTATGGAGAA---TCTTAGGGGAAG--- 530
Query 861 CCCCCATAGT--TCTCT-A-GAGTATAGTTCGAAATTGAGTTTACAAGAGCAACTTCTCT 916
| ||||| ||| | | |||||| | ||||| | |||||||||||||| ||||| |
Sbjct 531 CTTTAATAGTGGTCT-TGACGAGTATGGCTCGAAGCTAAGTTTACAAGAGCAGCTTCTTT 589
Query 917 CACAAGTTTTGAACGAAAA-GGACATTAGGATACGCCATTTAGGTGCGATACAAGAAAGG 975
|| || | |||||| |||| || || || ||| |||||||||||||||||||||||||
Sbjct 590 CAAAAATATTGAACCAAAATGG-TATGAGAATATACCATTTAGGTGCGATACAAGAAAGG 648
Query 976 CTACACGACCAGAGGGTTCTTATCATTCTTGATGA 1010
||| ||||| | || || ||||||||||||||
Sbjct 649 CTATGTGACCAAAAAGTGCTAATCATTCTTGATGA 683
> Ahg914952 jgi|Araly1|914952|Al_scaffold_0001_5206
Length=558
Score = 231 bits (125), Expect = 9e-60
Identities = 264/328 (80%), Gaps = 22/328 (7%)
Strand=Plus/Plus
Query 971 AAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACG-TGACGAGTCTAGAGCAA 1029
|||||||| ||||||||||||||||||| ||||||||||| | || ||||||| | |
Sbjct 38 AAAGGCTAGACGACCAGAGGGTTCTTATTATTCTTGATGATGAGGA-GAGTCTATTTCCA 96
Query 1030 CTAGAGGTTTTGGCT-AATATCAAGTGGTATGGTCCTGGAAGTAGGATCATAGTAATC-A 1087
||||||| ||||| | |||| | ||||| |||||||||||||||| ||||||| | | |
Sbjct 97 CTAGAGGCTTTGG-TCGATATTACGTGGTTTGGTCCTGGAAGTAGGGTCATAGTTA-CAA 154
Query 1088 CT-AAAAAGAAAGATATTTTGGTGCAACATGGTATCTGTGATATATACCATGTGGGTTTT 1146
| ||||| ||| | ||||||| ||||||||||||| |||||||||||| ||||| |||
Sbjct 155 TTGAAAAACAAA-AGATTTTGGAGCAACATGGTATCAATGATATATACCAAGTGGGGTTT 213
Query 1147 CCAACAG-ATGCAGATGCTCTAAAGATCTTTTGTCTATCTGCTTATAGACAAACCTCTCC 1205
||| ||| | | ||| |||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 214 CCATCAGAAAG-AGAAGCTCTAAAGATCTTTTGTCTATCTGCTTTTAGGCAAACCTTTCC 272
Query 1206 ACCTGATG-GATCTATGAAAATTCATGAGTG-TGAAATGTTTATAAA-AATTTGTGGCAA 1262
|||| ||| | | ||| | | | || | | |||| ||| || |||| |||||||
Sbjct 273 ACCTAATGTGTT-TAT-AGC-T-CTTGCG-GATGAA--GTTGC-AAGTAATT-GTGGCAA 323
Query 1263 TCTTCCATTGCATCTACATGTTTTGGGG 1290
|||||| ||| |||||||||||| |||
Sbjct 324 TCTTCCGTTGGGTCTACATGTTTTAGGG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5