BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66110.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908089 jgi|Araly1|908089|Al_scaffold_0002_1170 1349 0.0
> Ahg908089 jgi|Araly1|908089|Al_scaffold_0002_1170
Length=1050
Score = 1349 bits (730), Expect = 0.0
Identities = 900/980 (92%), Gaps = 19/980 (2%)
Strand=Plus/Plus
Query 1 ATGACTTCTCATCATTACGACGTAGCTTCTTCGTCAAACCCTCCTCCACCACTCACCGCA 60
||||| |||| |||| |||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGACATCTCCTCATGACGACGAAGCTTCTTCATCAAACCCTCCTCCACCACTAACCGCA 60
Query 61 TCACGTATCTACATCGGAAACAAAGCAAAAGAGATTCTCGCAACACGTGACATCACCGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TCACGTATCTACATCGGAAACAAAGCAAAAGAGATTCTCGCAACACGTGACATCACCGGA 120
Query 121 ATCACAAAACTCGTCACTACCCTCTGTTACGGCAAAGAAACAGAGCAATCTTCTTCATCT 180
||||||||||||||||||| |||||||||||| |||||||| || | || ||||
Sbjct 121 ATCACAAAACTCGTCACTAACCTCTGTTACGGTAAAGAAAC--AG--A---TC--AATCT 171
Query 181 TCAAAGCTTCTCTATGAAGTCTTCACAAAACATTTCCCAAATATCTTAGTCTCAAAACTC 240
|||||||||||||| ||| |||| |||||||||||||||| || |||||||||||||||
Sbjct 172 TCAAAGCTTCTCTACGAAACCTTCTCAAAACATTTCCCAAACATTTTAGTCTCAAAACTC 231
Query 241 CTCCAAATCTACAGTTCCGGTACCGATATAACCCCAAAGATTCGATCTTTCTCACTCTAT 300
|||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 232 CTCCAAATCTACAGTTTCGGTACCGATATAACCCCGAAGATTCGATCTTTTTCAGTCTAT 291
Query 301 CTTCTCGATTCACTTCTCACGGATATCGACGATTTCCGTGGTGGTTT-AAAAACAGAGTC 359
|| |||||||||||||||| ||||||||||||||| || |||||||| || || ||||||
Sbjct 292 CTCCTCGATTCACTTCTCATGGATATCGACGATTTACGCGGTGGTTTGAAGAA-AGAGTC 350
Query 360 TTTGGATGTTATCAAGAACCGTGTAAGTACTTGCCTTCTCTCGCAAGAAACTTCAT-ATG 418
|||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||| | |||
Sbjct 351 TTTGAATGATATCAAGAACCATGTAAGTTCTTGCCTTCTCACGCAAGAAACTTC-TGATG 409
Query 419 AAGACTTTAAACTCCTCTCAAGAATCGTATCTCGTGTCTGTGTTGATGTTTTCATTGGA- 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 410 AAGACTTTAAACTCCTCTCAAGAATCGTATCTCGTGTCTCTGTTGATGTTTTCATTGCAA 469
Query 478 GACAAACCTTGGGACGAGCTCTGTTCTTATATTCTCTCATTAGATGGGAATAAAAAAGCT 537
| ||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 470 G-CAAGCCATGGTACGAGCTCTGTTCTTATATTCTTTCATTAGATGGGAATAAAAAAGCT 528
Query 538 CTCTTGATGTTCAGTGAATTGCCAACAG-TCCTTGATGAAGAGTTCTTAATGCCGTTGTT 596
|| ||| |||| |||||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 529 CTGTTGTTGTTTAGTGAATTGCCAAC-GCTTCTTGATGAAGAGTTCTTGATGCCGTTGTT 587
Query 597 GGATAATGGTCTAGGTTTAAAGATTGTTAGTGTGTTGTTGATGAATCAATATTATGATGA 656
||| |||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 588 GGAGAATGGTTTTGGTTTAAAGATTGTTAATGTGTTGTTGATGAATCAAGATTATGATGA 647
Query 657 AGAAGAATGGTGTTTAGCTTTAGAAGCTGGGTTTAGTTTGATACTTCAGCTTGTGAATTT 716
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AGAAGAATGGTGCTTAGGTTTAGAAGCTGGGTTTAGTTTGATACTTCAGCTTGTGAATTT 707
Query 717 GGACAAGAAGAGTTTGGTTTGGGATTTGGTTTACGTGATTGTGAAATCGATTTGGGAGAT 776
| | || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 708 GAAGAATAAGAGTTTGGTTTGGGATTTGGTTTACGTGATTGTGAAATCGGTTTGGGAGAT 767
Query 777 GGTTAATGTGAAGAGAAGAGAGATTGTTGTGCGTAAAGGGTTTGTTAGAGTTGCGAAGAA 836
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 768 GGTTAATGTGAAGAGAAGAGAGGTTGTTGTGCGTAAAGGGTTTGTTAGAGTTGCTAAGAA 827
Query 837 AGTGAGAAGAGAAGCTTTGAGGTTTCGTGAGGC-TGAGTATGAAGTTGTGTCACGTTTAG 895
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 828 AGTTAGAAGAGAAGCTTTGAGGTTTCGTGAG-CATGAGTATGAAGTTGTGTCACGTTTAG 886
Query 896 GTTTGATGATGCTGAGGATTAATGGACTTGGTGAAGTTACGATGATGATGGTGACTTTGA 955
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 887 GTTTGATGATACAGAGGATTAATGGACTTGGTGAAGTTACGATGATGATGGTGACGATGA 946
Query 956 TTCACGAAATTCTTGAGAGG 975
|||| ||| |||||||||||
Sbjct 947 TTCATGAAGTTCTTGAGAGG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5