BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66120.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475714 jgi|Araly1|475714|fgenesh2_kg.2__844__AT1G66120.1 2494 0.0
Ahg908054 jgi|Araly1|908054|Al_scaffold_0002_1135 518 7e-146
> Ahg475714 jgi|Araly1|475714|fgenesh2_kg.2__844__AT1G66120.1
Length=1828
Score = 2494 bits (1350), Expect = 0.0
Identities = 1674/1833 (91%), Gaps = 11/1833 (1%)
Strand=Plus/Plus
Query 8 CCACTCATACAAGATGGATAATCTAGTGTTATGTGAAGCAAACAATGTTCCTCTAACGCC 67
|||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 CCACACATACAATATGGATAATCTAGCGTTATGTGAAGCAAACAACGTTCCTCTAACGCC 60
Query 68 CATAACGTTCTTGAAGAGAGCTTCGGAGTGTTATCCCAACCGAACTTCGATAATCTACGG 127
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||
Sbjct 61 CATAACGTTCTTGAAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCCATAATCTATGG 120
Query 128 GCAAACTCGCTTCACTTGGCCTCAGACTTATGACCGTTGCTGTCGTCTAGCTGCTTCTCT 187
||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 121 AAAAACTCGGTTCACTTGGCCTCAAACCTATGACCGTTGCTGTCGTCTCGCAGCTTCTCT 180
Query 188 CCTCTCTCTTAACATCACCCGAAACGACGTTGTCTCGATTTTGGCCCCAAACGTACCTGC 247
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CCTCTCTCTTAACATCACTCGAAACGACGTCGTCTCGATTTTGGCCCCAAACGTACCTGC 240
Query 248 CATGTACGAGATGCACTTTAGCGTTCCCATGACCGGAGCCGTACTTAACCCCATTAACAC 307
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 241 CATATACGAGATGCATTTTAGCGTTCCCATGACCGGAGCTGTACTTAACCCTATTAACAC 300
Query 308 CCGTCTTGACGCCAAAACCATAGCCATCATTCTCCGCCACGCCGAGCCAAAGATCTTATT 367
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GCGTCTTGACGCCAAAACCATAGCCATCATCCTCCGCCACGCCGAGCCAAAGATCTTATT 360
Query 368 TGTGGACTACGAGTTTGCTCCTTTGATCCAAGAAGTCCTCCGTCTCATACCCACTTACCA 427
||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| || |
Sbjct 361 TGTGGACCATGAGTTTGCTCCTTTGATCCAAGAAGTCCTCAGTCTCCTACCCACTGACGA 420
Query 428 GTCACAACCGCATCCGCGGATCATATTAATTAACGAGATTGATTCCACTACAAAGCCTTT 487
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 421 GTCACAACCTCATCCGCGGATCATATTCATTAACGAGATTGATTCCACTACAAATCCTTT 480
Query 488 CTCCAAGGAGTTAGACTACGAGGGTCTCATCCGAAAAGGAGAACCTACGCCATCCTCCTC 547
|||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 481 TTCCAAGGATTTGGACTACGAGGGTCTCATCCGAAAAGGAGAACCTACGCCCTCCTTGTA 540
Query 548 CGCAAGCATGTTCCGTGTCCACAACGAGCATGACCCTATCTCCTTGAACTACACGTCAGG 607
|||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 541 CGCAAGTATGTTCCTTGTCCACAACGAGCATGACCCTATCTCATTGAACTACACGTCCGG 600
Query 608 TACCACGGCAGACCCAAAAGGTGTGGTGATTAGCCACCAAGGAGCCTACTTGAGCGCTTT 667
|||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 601 TACCACTGCCGACCCAAAAGGTGTGGTGGTTAGCCACCGAGGAGCCTACTTGAGCGCTTT 660
Query 668 GAGCTCCATTATTGGCTGGGAAATGGGGATTTTCCCTGTCTACCTCTGGACACTACCTAT 727
||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct 661 GAGCTTGATTATTGGCTGGCAAATGGGGATTTTCCCGGTCTACCTTTGGACTCTACCTAT 720
Query 728 GTTTCATTGCAATGGATGGACGCACACGTGGTCCGTCGCTGCTCGTGGTGGTACTAATGT 787
||||||||||||||||||||||| | | ||||| |||||||| ||||| |||||||||||
Sbjct 721 GTTTCATTGCAATGGATGGACGCTCCCCTGGTCTGTCGCTGCACGTGGCGGTACTAATGT 780
Query 788 ATGCATCAGACATGTCACTGCTCCAGAGATCTATAAGAACATAGAATTGCATGGCGTGAC 847
|| || || || || ||||| |||||||||||||| ||||||||||||||| | |||||
Sbjct 781 GTGTATGAGGCACGTGACTGCCCCAGAGATCTATAAAAACATAGAATTGCATAGTGTGAC 840
Query 848 TCACATGTCATGTGTTCCTACGGTCTTTAGGTTTCTCCTTGAAGGAAG-TCGAACCGACC 906
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 841 GCATATGTCCTGTGTTCCTACGGTCTTTAGGTTTCTCCTTGAAGG-AGATCGAACCAACC 899
Query 907 AGTCACCCAAGTCCTCGCCGGTTCAGGTGTTGACTGGAGGTTCTTCTCCTCCGGCTGTCC 966
|||||| ||||||| | ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 900 AGTCACACAAGTCCCCACCGGTTCAGGTGTTGACCGGAGGTTCTTCGCCCCCGGCTGTCC 959
Query 967 TTATAAAGAAAGTTGAGCAGCTGGGGTTTCACGTGATGCATGGCTATGGGCTTACAGAGG 1026
|||||||||||||| ||| | | |||||||| |||||||||| ||||||||| || ||||
Sbjct 960 TTATAAAGAAAGTTCAGCGGTTAGGGTTTCAAGTGATGCATGTCTATGGGCTGACCGAGG 1019
Query 1027 CCACCGGCCCGGTTCTCTTTTGTGAATGGCAAGACGAGTGGAACAAACTACCAGAGCATC 1086
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCACTGGTCCGGTTCTCTTTTGTGAATGGCAAGACGAGTGGAACAAACTACCAGAGCATC 1079
Query 1087 AACAGATAG-AGCTACAACAAAGGCAAGGTGTAAGGAACCTAACCCTAGCCGACGTTGAC 1145
|||| || | | |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1080 AACAAAT-GCAACTACAACAAAGGCAAGGTGTAAGGCACCTAACCCTAGCTGACGTTGAC 1138
Query 1146 GTGAAGAACACGAAAACTCTAGAGAGTGTCCCACGCGACGGGAAGACAATGGGAGAAATT 1205
||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1139 GTGAAAAACACCAAAACTCTAGAGAGTGTCCCGCGCGACGGTAAGACAATGGGAGAAATT 1198
Query 1206 GTTATTAAAGGAAGCAGCCTAATGAAAGGGTATCTAAAGAATCCTAAAGCAACATCTGAA 1265
|| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 GTCATTAAAGGAAGCATTCTTATGAAAGGGTATCTAAAGAACCCTAAAGCAACATCTGAA 1258
Query 1266 GCATTTAAACACGGATGGCTT-AACACGGGAGACATAGGTGTGATTCATCCTGATGGATA 1324
|| ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1259 GCCTTTAAACACGGATGG-TTCAACACAGGAGATGTAGGTGTGATTCATCCTGATGGATA 1317
Query 1325 TGTAGAGATCAAAGATCGATCCAAAGACATCATAATCTCGGGAGGTGAGAACATAAGTAG 1384
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1318 TGTAGAGATCAAAGATAGATCCAAAGACATCATCATCTCGGGAGGTGAGAACATCAGCAG 1377
Query 1385 TATTGAGGTCGAGAAAGTTCTTTACATGTATCAGGAAGTGCTCGAGGCTGCGGTTGTAGC 1444
|||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||
Sbjct 1378 TATTGAGGTCGAGAAAGTTCTTTACATGCATCAACAAGTGCTCGAGGCCGCGGTTGTGGC 1437
Query 1445 CATGCCTCATCCTCTATGGGGTGAAACCCCGTGTGCGTTTGTTGTTCTAAAGAAGGGTGA 1504
||||||||| ||| | |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1438 CATGCCTCACCCTATGTGGGGTGAAACCCCGTGTGCATTCGTTGTTCTAAAGAACGGTGA 1497
Query 1505 AGAGGGATTGGTGACTAGTGAAGGAGATCTCATTAAATATTGCCGTGAGAATATGCCGCA 1564
||||| ||||||||| | |||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 1498 AGAGGAATTGGTGACCAATGAAGGAGATCTCATTGAGTATTGCCGTGAGAATCTGCCACA 1557
Query 1565 TTTTATGTGTCCGAA-AAAGGTGGTGTTCTTTCAAGAGCTTCCAAAGAATAGTAACGGAA 1623
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 TTTTATGTGTCCGAGGAAAG-TGGTGTTCTTTCAAGAGCTTCCAAAGAATAGTAATGGAA 1616
Query 1624 AGATCCTAAAGTCTAAGTTGAGAGACATCGCTAAGGCATTGGTGGTCAGGGAGGACGATG 1683
|||||| |||||||||||| ||||| |||||||||| || ||||||| |||||||||||
Sbjct 1617 AGATCCCCAAGTCTAAGTTGCGAGACGTCGCTAAGGCCTTAGTGGTCAAGGAGGACGATG 1676
Query 1684 CCGGCTCCAAGAAAGTTCATCAACGCAGTATCGAACACGTTAGTTCGAGGCTTTAGCGTT 1743
||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1677 TCGGTTTCAAGAAAGTTCATCAACGCAGTGTCGAACACGTTAGTTCGAGGCTTTAACGTT 1736
Query 1744 ACTATTCATCGATGTGTTTATGTATATGCGTATGT-TT-GGATTGATATGTTTCTTAGTT 1801
|| |||||||||||||||||||||||||||| ||| || |||| ||||||||| ||||||
Sbjct 1737 AC-ATTCATCGATGTGTTTATGTATATGCGTGTGTATTTGGATCGATATGTTTTTTAGTT 1795
Query 1802 TACATGTATGGATTGTTAAATTTACGCTAATAA 1834
| ||||||| |||| ||||||||||||||||||
Sbjct 1796 TGCATGTATAGATTTTTAAATTTACGCTAATAA 1828
> Ahg908054 jgi|Araly1|908054|Al_scaffold_0002_1135
Length=711
Score = 518 bits (280), Expect = 7e-146
Identities = 585/728 (80%), Gaps = 38/728 (5%)
Strand=Plus/Plus
Query 21 ATGGATAATC-TAGTGTTATGTGAAGCAAACAATGTTCCTCTAACGCCCATAACGTTCTT 79
|||||||| | | | ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGATAA-CTTGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTT 59
Query 80 GAAGAGAGCTTCGGAGTGTTATCCCAACCGAACTTCGATAATCTACGGGCAAACTCGCTT 139
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 60 GAAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTT 119
Query 140 CACTTGGCCTCAGACTTATGACCGTTGCTGTCGTCTAGCTGCTTCTCTCCTCTCTCTTAA 199
||||||||||||||| ||||| ||||| ||||||||||| ||||||||| | |||||||
Sbjct 120 CACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAA 179
Query 200 CATCACCC-GAAACGACGTTGTCTC-GATTTTGGCCCCAAACGTACCTGCCATGTACGAG 257
|||| || ||| ||| || || || | || ||||||||||| |||| ||||| || |||
Sbjct 180 CATCGCCAAGAA-CGATGTGGTATCCG-TTGTGGCCCCAAACATACCGGCCATATATGAG 237
Query 258 ATGCACTTTAGC-GTTCCCATGACCGGAGCCGTACTTAACCCCATTAACACCCGTCTTGA 316
||||||||| || ||||||||| | ||||| ||||||||||| || ||||| ||||| ||
Sbjct 238 ATGCACTTT-GCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGA 296
Query 317 CGCCAAAA-CCATAGCCATCATTC-TCCGCCACGCCGAGCCAAAGATCTTATTTGTGGAC 374
||| || | |||| ||| || || ||||||||||| |||| ||||||||||| | |||
Sbjct 297 CGC-AACATCCATTGCCG-CAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGAC 354
Query 375 TACGAGTTT-GCTCCTTTGA-TCCAAGAAGTCCTCCGTCT-CATACCCACT-T-ACCAGT 429
| ||||| | || ||| || | ||| | |||| ||| | || | | | | | | |
Sbjct 355 CGC-AGTTTTGAGCCCTTGGCTCGA-GAAATTCTCCATCTAC-TATC-A-TGTGATGACT 409
Query 430 CACAACCGCATCC-GC-GGATCATATTAATTAACGAGATTGATT-CCACTACAAAGCCTT 486
|| |||| | | || || ||||||| ||| |||||| |||| || ||| |||| ||
Sbjct 410 CA-AACCTAAACTTGCTGG-TCATATTTATTGACGAGAACGATTACC-CTA-AAAGGGTT 465
Query 487 TC-TCCAAGGAGTTAGACTACGAGGGTCTCATCCGAAAAGG-AGAACCTACGCCATCCTC 544
|| | | ||||||||||||||| ||||||||| | | || ||| |||||||| ||||
Sbjct 466 TCGTGTGACGAGTTAGACTACGAGTGTCTCATCC-AGAGGGGAGAGCCTACGCCCTCCTT 524
Query 545 C-TCCGCAAGCATGTTCCGTGTCCACA-ACGAGCATGACCCTATCTCCTTGAACTACACG 602
| ||| | ||||||||| | || | |||||||||| || ||||| || ||||||||
Sbjct 525 GGTG-GCACGTATGTTCCGTATTCA-AGACGAGCATGATCCAATCTCATTAAACTACACA 582
Query 603 TCAGGTACCACGGCAGACCCAAAAGGTGTGGTGATTAGCCACCAAGGAGCCTACTTGAGC 662
|| ||||| || || |||||||||||||| ||||||||||||| |||||| || ||| ||
Sbjct 583 TCGGGTACAACTGCCGACCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGC 642
Query 663 GCTTTGAGC-TCCATTATTGGCTGGGAAATGGGGATTTTCCCTGTCTACCTCTGGACACT 721
| || ||| | |||||||| ||||||||||||| | |||||||||||| ||||| ||
Sbjct 643 TCATTAAGCGTG-ATTATTGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCT 701
Query 722 ACCTATGT 729
||||||||
Sbjct 702 ACCTATGT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5