BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66145.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925761 jgi|Araly1|925761|scaffold_201322.1 248 2e-65
> Ahg925761 jgi|Araly1|925761|scaffold_201322.1
Length=343
Score = 248 bits (134), Expect = 2e-65
Identities = 238/285 (84%), Gaps = 19/285 (7%)
Strand=Plus/Plus
Query 40 CTAATCTTGTTCCTAATAACGTCGTCTATTGTTGCTATTCGTGAAGACCCATCGTTGATT 99
|||||||| ||||||||||||||||| | | |||||||| ||||| |||||| ||||||
Sbjct 51 CTAATCTTTTTCCTAATAACGTCGTCGGTGGCTGCTATTCTTGAAGTCCCATCTTTGATT 110
Query 100 GGAGTAGACAGACAGATCCCAACAGGTCCTGATC-----C-T--T-----T-A-CATAAT 144
||||| || ||| |||||||||||||||| |||| | | | | | ||||||
Sbjct 111 GGAGTCGAGAGAAAGATCCCAACAGGTCCGGATCTTTTACATAATGCGCCTCATCATAAT 170
Query 145 CCTCCTCAGCCTTCACCAAAACATCATCATTGGATCGGAGTCGAGGAAAACAATATCGAC 204
|||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 171 CCTCATCAGCCTTCACCAGGACATCGTCATTGGATCGGAGTCGAGGAAAAAAATATCGAA 230
Query 205 CGGTCTTGGAATTATGTGGATTATGAATCTCATCAT-GC-ACATAGTCCTATACATAACT 262
|||||| |||||||||||||||||| |||| |||| | ||||| ||||||||| | |
Sbjct 231 TGGTCTTTGAATTATGTGGATTATGATTCTCCTCATCCCTACATAAACCTATACAT-AGT 289
Query 263 -CTCCTGAGCCTGCACCATTATATCGTCATTTGATTGGAGTCTAG 306
||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 290 GCTCCTCAGCCTTCACCATTATATCGTCATTTGATTGGAGTCTAG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5