BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66160.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925763 jgi|Araly1|925763|scaffold_201324.1 1999 0.0
> Ahg925763 jgi|Araly1|925763|scaffold_201324.1
Length=1337
Score = 1999 bits (1082), Expect = 0.0
Identities = 1256/1341 (94%), Gaps = 8/1341 (1%)
Strand=Plus/Plus
Query 2 TTAGTAATAAACGGTCAAAGAATGGGACTTTCATTGAGAGTGAGACGTCGTGGAGGAAGT 61
|||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGCAAGAGACGGTCAAATAATGGGACTTTCATTGAGAGTGAGACGTCGTGGAGGAAGT 60
Query 62 GTTAGCAAGAAAGAGATCATTCCGGTGACAAGTTGCTCGGAGGAAGTGGAGATAACCATA 121
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GGAAGCAAGAAGGAGATTATTCCGGTGACAAGTTGCTCGGAGGAAGTGGAGATAACGATC 120
Query 122 CCATCGCAGTTTCAATGTCCGATATCTTACGAGCTAATGAAGGATCCGGTGATTATTGCC 181
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 121 CCGTCGCAGTTTCAATGTCCGATTTCTTACGAGCTAATGAAAGATCCGGTGATTATTGCT 180
Query 182 TCGGGGATCACTTACGATCGCGAAAACATCGAGAAGTGGTTCGAGTCCGGGTACCAAACT 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGGGGATCACTTACGACCGCGAAAACATCGAGAAGTGGTTCGAGTCCGGGTACCAAACT 240
Query 242 TGTCCCGTTACAAACACGGTTTTGACAAGTTTGGAACAGATTCCGAACCATACGATTCGG 301
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 241 TGTCCCGTTACTAACACGGTTTTGACAAGTTTGGAGCAGATTCCGAATCATACGATTCGG 300
Query 302 AGGATGATTCAAGGTTGGTGCGGGTCGTCACTAGGCGGCGGGATTGA-ACGAATCCCGAC 360
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 301 AGGATGATTCAAGGTTGGTGCGGGTCGTCACTAGGCGGCGGGGTTGAGA-GAATCCCGAC 359
Query 361 GCCTCGTGTACCCGTGACCAGTCATCAAGTCTCCGAGATTTGTGAGAGGTTATCCGCTGC 420
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 GCCACGTGTACCCGTGACGAGTCATCAAGTCTCCGAGATTTGTGGGAGGTTATCCGCTGC 419
Query 421 TACGCGGCGTGGAGACTACGCCGCGTGCATG-GAGATGGTTACGAAGATGACGAGACTAG 479
||||||||||||||||||||||||||||| | |||||||||| |||| ||| || | | |
Sbjct 420 TACGCGGCGTGGAGACTACGCCGCGTGCA-GCGAGATGGTTAGGAAGTTGAAGATA-TTG 477
Query 480 G-AAAAGAGAGCGAGAGGAATCGAAAATGCGTTAAGGAAAACGGCGCGGGATTGGTTCTT 538
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 478 GAAAAAGAGAGCGAGAGGAACCGAAAATGCGTTAAGGAAAACGGCGCCGGATTGGTTCTT 537
Query 539 TGCGTTTGCTTCGACGCGTTTTCCGAAAACGCAAATGCGTCATTATTATTGGAGGAGACT 598
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
Sbjct 538 TGCGTTTGCTTCGACGCGTTTTCCGAAAACGCAAACGCGTCACTATTATTGGAAGAGATT 597
Query 599 GTGTCTGTGCTGACGTGGATGCTTCCCATTGGTTTAGAAGGTCAATCCAAACTCACCACG 658
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GTGTCTGTGCTGACGTGGATGCTTCCCATTGGTTCAGAAGGTCAATCCAAACTCACCACT 657
Query 659 ACGTCGTCGTTTAATCGTTTAGTGGAACTGTTGAGAAATGGTGATCAAAACGCTGCGTTT 718
| ||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 658 AAGTCGTCGTTTAATCGTTTAGTGGAACTTTTGAGAAACGGAGATCAAAACGCACCGTTT 717
Query 719 TTGATAAAAGAGCTTCTTGAGCTTAACGTAACTCACGTTCACGCGTTAACAAAGATCAAT 778
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 718 GTGATCAAAGAGCTTCTTGAGCTTAACGTAGCTCACGTTCACGCGTTAACAAAGATTAAT 777
Query 779 GGCGTCCAAGAAGCGTTCATGAAATCGATTAATCGCGATTCTACATGCGTCAACTCGTTA 838
||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| |||
Sbjct 778 AGCGTCGAAGAAGCGTTCTTGAAATCGCTTAATCGCGATTCTACATGCGCCAACTCATTA 837
Query 839 ATATCAATCCACCATATGATCTTGACAAATCAAGAAACCGTATCAAGGTTTCTTGAATTG 898
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 ACATCAATCCACCACATGATCTTGACAAATCAAGAAACCGTTTCAAGGTTTCTTGAATTG 897
Query 899 GATCTTGTGAATATAACAGTGGAGATGCTAGTGGATTCAGAAAACAGCGTTTGCGAGAAA 958
||||||||||||| ||||||||||||| |||| ||||| |||||||| ||||| ||||||
Sbjct 898 GATCTTGTGAATACAACAGTGGAGATGTTAGTTGATTCTGAAAACAGTGTTTGTGAGAAA 957
Query 959 GCGTTAACGGTATTAAACG-TGATTTGTGAAACTAAAGAAGGAAGAGAGAAAGTGAGAAG 1017
||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGTTAACGGTTTTAAACGCT-ATTTGTGAAACTAAAGAAGGAAGAGAGAAAGTGAGAAG 1016
Query 1018 AAACAAGCTGGTGATACCGATTTTGGTGAAGAAGATTTTGAAGATTTCTGAGAAGAAAGA 1077
|||| || | ||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1017 AAACGAGTTAGTGATACCGATATTGGTGAAGAAGATTTTGAAGATTACAGAGAAGAAAGA 1076
Query 1078 TTTGGTTTCTGTGATGTGGAAGGTTTGTAAAAGTGGTGATGGGTCTGAAGTTGAAGAAGC 1137
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1077 TTTGGTTTCTGTGATGTGGAAGATTTGTAAAAGTGGAGATGGGTATGAAGTTGAAGAAGC 1136
Query 1138 GTTGAGATTAGGTGCGTTTAAGAAGCTTGTTGTCATGTTACAAGTTGGATGTGGTGAAGG 1197
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 GTTGAGATTAGGTGCGTTTAAGAAGCTTGTTGTGATGTTACAAGTTGGATGTGGTGAAGA 1196
Query 1198 AACTAAGGAGAAAGTTACAGAGTTGTTGAAGATGATGAATAAAGTTATGAAGATGAATGG 1257
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AACAAAGGAGAAAGTTACTGAGTTGTTGAAGATGATGAATAAAGTTATGAAGATGAATGG 1256
Query 1258 TTTTGTTGATCGTTCTTATTCTTCTTCAATTGAGTTTAAACATGTTAAGAAACCATTTTA 1317
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1257 TTTTGTTGATCGTTCTGATTCTTCTTCTATTGAGTTTAAACATGTTAAGAAACCATTTTG 1316
Query 1318 ATACATTTTGTATAGAGGAAA 1338
|||||||||||||||||||||
Sbjct 1317 ATACATTTTGTATAGAGGAAA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5