BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G66173.1

Length=1483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925766 jgi|Araly1|925766|scaffold_201327.1                        279    3e-74


> Ahg925766 jgi|Araly1|925766|scaffold_201327.1
Length=238

 Score =  279 bits (151),  Expect = 3e-74
 Identities = 201/224 (90%), Gaps = 8/224 (4%)
 Strand=Plus/Plus

Query  12   ATATGGATGATCCTC-AGTCTCCTCGAGTTA-ATTCAAATTGCTCAAGTATTCCTCTTCT  69
            |||||||| |||||| ||  ||||||||||| || |||| || |||||||||||||| ||
Sbjct  19   ATATGGATCATCCTCAAG-ATCCTCGAGTTACATCCAAA-TGTTCAAGTATTCCTCTCCT  76

Query  70   TGGTTGCATCATGGACACTCTTGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA  129
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  77   TGGTTGTATCATGGACACTCTAGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA  136

Query  130  ACAAGTCGTCGACACTGCGGTTGCGGAAAATCGTGC-AGCTCATAAACACTTTAGGCAAC  188
            | ||| ||||||||  ||||||||||||||||| || || ||| ||||||||||||||||
Sbjct  137  AGAAGCCGTCGACAAGGCGGTTGCGGAAAATCGAGCAAG-TCAGAAACACTTTAGGCAAC  195

Query  189  TCAACTGTGTTAAACTCAACTAGC-CCATGATGATAAGTTTTTC  231
            ||||||||||||||||||| |||| || ||||||||||| ||||
Sbjct  196  TCAACTGTGTTAAACTCAATTAGCTCC-TGATGATAAGTATTTC  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55497486965


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5