BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66180.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908102 jgi|Araly1|908102|Al_scaffold_0002_1183 1168 0.0
Ahg493732 jgi|Araly1|493732|fgenesh2_kg.7__3165__AT5G37540.1 1035 0.0
> Ahg908102 jgi|Araly1|908102|Al_scaffold_0002_1183
Length=975
Score = 1168 bits (632), Expect = 0.0
Identities = 728/774 (94%), Gaps = 8/774 (1%)
Strand=Plus/Plus
Query 34 ATGTCTCCCATTCCAAAACCA--c-tcttcttcttcttctt-c-c-tcaactatgtgtct 87
||||||||||||| ||||||| | |||||||||||||||| | | |||||||||| |||
Sbjct 1 ATGTCTCCCATTCTAAAACCACTCTTCTTCTTCTTCTTCTTCCTCTTCAACTATGTATCT 60
Query 88 ctctcaacctcactctctcttcacctcccactcacatctctccctatctccaccaccaca 147
||||||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 61 CTCTCAACCTCACTCTCCCTCCACCTCCCACTCACATCTCTCTCTATCTCCCCCACCACA 120
Query 148 aactctcaccGCTTCACCACCTCCCTCCTCTCCCGGAAAAACCCATCTCCGTCGTCTCCA 207
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 121 AACTCTCACCGCTTCACCACCTCTCTCCTCTCCCGGAAAACCCCATCTCCGTCGTCTCCA 180
Query 208 CCATACAACTTCCGATCAAGATTCAAATACTCAATGGCTCTAATCATCTCACTCCCCATA 267
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CCTTACAACTTCCGATCAAGATTCAAATACTCAATGGCTTTAATCATCTCACTCCCCATA 240
Query 268 GGAACACCACCACAAGCTCAACAAATGGTTCTTGACACTGGAAGCCAACTTTCTTGGATC 327
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 GGAACACCACCACAAGCTCAACAAATGGTTCTTGATACCGGAAGCCAACTTTCTTGGATC 300
Query 328 CAATGTCATCGTAAAAAGCTTCCTCCAAAACCAAAAACATCATTTGATCCATCTCTTTCT 387
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 CAATGTCATCGTAAAAAGCTTCCTCCAAAACCTAAAACATCTTTTGATCCATCTCTTTCT 360
Query 388 TCTTCTTTCTCAACTTTGCCTTGCTCACATCCTCTTTGTAAACCGAGAATTCCCGATTTT 447
||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 361 TCTTCTTTCTCTACTTTACCTTGCTCTCATCCTCTTTGTAAACCAAGAATTCCCGATTTT 420
Query 448 ACCCTTCCTACTTCTTGTGACTCCAACAGGTTATGTCACTACTCTTACTTCTACGCTGAT 507
|||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 421 ACCCTTCCCACTTCTTGTGACTCGAACCGGTTATGTCATTACTCTTACTTCTACGCTGAT 480
Query 508 GGAACCTTCGCTGAGGGTAATCTCGTTAAAGAAAAAATCACTTTCTCAAATACCGAAATT 567
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GGAACCTTCGCTGAGGGTAATCTCGTCAAAGAAAAAATCACTTTCTCAAATACCGAAATT 540
Query 568 ACCCCTCCTTTGATTCTTGGTTGTGCTACTGAGTCTTCTGATGATAGGGGCATTTTGGGA 627
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 541 ACCCCTCCTTTGATTCTTGGATGTGCAACGGAGTCTTCTGATGATAGGGGTATTTTGGGG 600
Query 628 ATGAACCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTTCGAAGTTCTCTTATTGC 687
||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 601 ATGAATCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTACAAAGTTCTCTTATTGT 660
Query 688 ATCCCTCCCAAATCAAACCGGCCCGGTTTTACTCCAACCGGTTCGTTTTACCTTGGTGAT 747
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 661 ATCCCTCCTAAATCAAACCGGCCCGGTTTTACTCCAACCGGTTCGTTTTACCTCGGAGAT 720
Query 748 AACCCGAATTC-ACACGGTTTCAAATACGTTTCTTTGTTGACTTTTCCTGAAAG 800
||||||||||| | | || ||||||||||||||||||||||| |||||||||||
Sbjct 721 AACCCGAATTCTAAA-GGATTCAAATACGTTTCTTTGTTGACATTTCCTGAAAG 773
Score = 315 bits (170), Expect = 9e-85
Identities = 192/203 (95%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 1124 GAGTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGGTGGGATTCATT 1183
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 773 GAGTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGATGGGATTCACT 832
Query 1184 GCGTTGGAATCGGACGGTCGAGTATGCTTGGAGCTGCTAGTAATATAATCGGGAACGTTC 1243
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 833 GTGTTGGAATCGGACGGTCGAGTATGCTTGGAGCAGCTAGTAATATAATCGGGAACGTTC 892
Query 1244 ATCAGCAAAATCTTTGGGTTGAGTTCGATGTGACCAATAGAAGAGTGGGTTTCGCTAAAG 1303
|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||
Sbjct 893 ATCAACAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTCGCTAGAG 952
Query 1304 CTGATTGTAGCAGAGTAGTGTGA 1326
|||||||||||||| || |||||
Sbjct 953 CTGATTGTAGCAGAATACTGTGA 975
> Ahg493732 jgi|Araly1|493732|fgenesh2_kg.7__3165__AT5G37540.1
Length=1589
Score = 1035 bits (560), Expect = 0.0
Identities = 1071/1308 (82%), Gaps = 74/1308 (6%)
Strand=Plus/Plus
Query 56 tcttcttcttcttcttcct-caact-atgtgtctctctca---ac--c-tcactctctct 107
|||||||||||||||| || ||||| | || ||| | ||| | | || || |||||
Sbjct 72 TCTTCTTCTTCTTCTT-CTGCAACTCA-GTTTCTTTATCATGGTCGTCGTCTCTTTCTCT 129
Query 108 tcacctcccactcacatctc-tc-cct-atctccaccaccacaaact-ctcac-cGCTTC 162
|| | || |||||||||| || || | ||||| |||||||||| ||| | | ||||
Sbjct 130 CCATTTTCCTCTCACATCTCTTCGTCTCA-CTCCA--ACCACAAACTCCTC-CTC-CTTC 184
Query 163 ACCACCTCCCTCCTCTCCCGGAAAAACCCATCTCCGTCGTC-TCCACCATACAAC-TTCC 220
| |||||||||||||| || ||||||||||||||||| | | || ||| || ||||
Sbjct 185 AAAACCTCCCTCCTCTCTCGCCGGAACCCATCTCCGTCGTCGT-CTCCGTAC-ACTTTCC 242
Query 221 GATCAAGA-TTCAAATACTCAATGGCTCTAATCATCTCACTCCCCATAGGAACACCACCA 279
|||||| | |||||||||||||||||||||||| |||| || ||||||||||||||| |
Sbjct 243 GATCAA-ACTTCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCATCT 301
Query 280 CAAGCTCAACAAATGGTTCTTGACACTGGAAGCCAACTTTCTTGGATCCAATGTCA--TC 337
||| ||||| | | |||||||| || ||||||||||| || |||||||| ||||| |
Sbjct 302 CAATCTCAAGAGCTAGTTCTTGATACCGGAAGCCAACTCTCATGGATCCAGTGTCACCCC 361
Query 338 --G----T-AA-AAA--GCTTCCTCCAAAACCAAAAACATCATTTGATCCATCTCTT-TC 386
| | || ||| |||||||| |||| || || |||||||| ||| || ||
Sbjct 362 AAGAAAATCAAGAAACCACTTCCTCC---TCCAACGACGTCGTTTGATCCTTCT-TTATC 417
Query 387 TTCTTCTTTCT-CAACTTTGCCTTGCTCACATCCTCTTTGTAAACCGA-GAATTCCCGAT 444
||| || |||| | || || |||||||||||||||||||||||||| | |||||||||||
Sbjct 418 TTCATCGTTCTCCGAC-TTACCTTGCTCACATCCTCTTTGTAAACC-ACGAATTCCCGAT 475
Query 445 TTTACCCTTCCTACTTCTTGTGACTCCAACAGGT-TATGTCACTACTCTTACTTCTACGC 503
|||||||| || |||||||||||||| ||| || | ||||||||||| |||||||||||
Sbjct 476 TTTACCCTCCCCACTTCTTGTGACTCAAAC-CGTCTCTGTCACTACTCATACTTCTACGC 534
Query 504 TGATGGAACCTTCGCTGAGGGTAATCTCGTTAAAGAAAAAATCACTTTCTCAAA-TACCG 562
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| | ||
Sbjct 535 TGATGGAACCTTCGCTGAGGGCAATCTCGTCAAAGAAAAATTCACTTTCTCAAACT-CCC 593
Query 563 AAATTACCCCTCCTTTGATTCTTGGTTGTGCTACTGAGTCTTCTGATGATAGGGGCATTT 622
||| ||||||||| |||||||||||||| |||| ||||| | || || | ||| ||||
Sbjct 594 AAACTACCCCTCCATTGATTCTTGGTTGCGCTAAAGAGTCAACAGACGAGAAGGGTATTT 653
Query 623 TGGGAATGAACCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTTCGAAGTTCTCTT 682
|||||||||| | ||||||||| |||||| | || ||||| ||||| || || |||||||
Sbjct 654 TGGGAATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATATCTAAATTCTCTT 713
Query 683 ATTGCATCCC-TCCCAAATCAAACCGGCCCGGTTTTA--CTCCAACCGGTTCGTTTTACC 739
|||| ||||| ||| |||||||| ||||| |||| || |||||||||| |||||||
Sbjct 714 ATTGTATCCCAACCC-GGTCAAACCGTCCCGG-TTTAGCCT-CAACCGGTTCATTTTACC 770
Query 740 TTGGTGATAACCCGAATTCACACGGTTTCAAATACGTTTCT-TTGTTGACTTTTCCTGAA 798
| || |||||||||||||| | |||||||||||||||||| || |||||||||||| ||
Sbjct 771 TCGGAGATAACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTT-TTGACTTTTCCTCAA 829
Query 799 AGTCAACGAATGCCGAATCTTGATCCTCTTGCTTACACTGTTCCTATGATTGGGATTAGA 858
|||||||| |||||||||||||| ||||| |||||||| || ||| || |||| || |||
Sbjct 830 AGTCAACGCATGCCGAATCTTGACCCTCTAGCTTACACAGTACCTTTGCTTGGTATCAGA 889
Query 859 TTTGGTTTGAAGAAG-CTTAACATTTCCGGTTCGGTTTTCAGACCCGATGCAGGCGGGTC 917
| || ||| || || ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 890 ATCGGACAAAAG-AGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGCGGGTC 948
Query 918 GGGTCAAACAATGGTTGATTCGGGATCCGAGTTTACTCATTTAGTAGACGCAGCTTACGA 977
||||||||| ||||| |||||||| || || |||||||| ||||| |||| || || ||
Sbjct 949 GGGTCAAACCATGGTGGATTCGGGTTCAGAATTTACTCACTTAGTCGACGTGGCGTATGA 1008
Query 978 TAAAGT-AAGAGCAGAGATAATGACACGTGT-AGGACGAAGATTAAAGAAGGGTTACGTC 1035
|||||| || || ||| ||| ||| | ||| || | |||||||||||| ||||||||
Sbjct 1009 TAAAGTCAA-AGAAGAAATAGTGAGGCTTGTGGGGTC-AAGATTAAAGAAAGGTTACGTG 1066
Query 1036 TACGGTGGAACAGCTGACATGTGTTTCGATGGAAA-CGTGGCGA---TGATCCCACGGTT 1091
|||||| ||||||||||||||||||||||||||| | | ||| ||||| ||||||
Sbjct 1067 TACGGTTCAACAGCTGACATGTGTTTCGATGGAAACCAT-CCGATGGTGATCGGACGGTT 1125
Query 1092 GATAGGAGATCTTGTGTTTGTGTTCACTAGAGGAGTTGAGATACTTGTTCCGAAAGAGAG 1151
|||||| ||||||||||||| ||| ||||| ||||||||||| ||| |||| | ||
Sbjct 1126 GATAGGCGATCTTGTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAG 1185
Query 1152 GGTTTTGGTTAACGTAGGAGGTGGGATTCATTGCGTTGGAATCGGACGGTCGAGTATGCT 1211
| ||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1186 GCTTTTGGTTAACGTTGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGTATGCT 1245
Query 1212 TGGAGCTGCTAGTAATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTCGA 1271
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1246 TGGTGCAGCTAGTAATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGA 1305
Query 1272 TGT-GACCAATAGAAGAGTGGGTTTC-GCTAAAGCTGATTGTAGCAGA 1317
||| | ||||||| ||||| ||||| | ||||||||| |||||||||
Sbjct 1306 TGTAG-CCAATAGGAGAGTTGGTTTTAG-TAAAGCTGAGTGTAGCAGA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5