BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66190.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475721 jgi|Araly1|475721|fgenesh2_kg.2__851__AT1G66190.1 1160 0.0
> Ahg475721 jgi|Araly1|475721|fgenesh2_kg.2__851__AT1G66190.1
Length=863
Score = 1160 bits (628), Expect = 0.0
Identities = 798/876 (91%), Gaps = 27/876 (3%)
Strand=Plus/Plus
Query 98 ATGCTCCCATTTGCCAACTACTACATTTCTTCACCATC--CGTCTCGGAGAAG-A-A-TG 152
|||||||||||||||||||||||||||||||||||||| |||| | |||||| | | |
Sbjct 1 ATGCTCCCATTTGCCAACTACTACATTTCTTCACCATCTACGTC-C-GAGAAGAACATTA 58
Query 153 CTATCAACAAC-A--ACGTAAACAAGAGGAGGAAGAAGAAA-CGGGCGATGATGGTTTAT 208
|| ||||||| | || ||||||||||||||||| ||| |||||||||| |||||||
Sbjct 59 ATAACAACAACGACGGCGGCAACAAGAGGAGGAAGAA-AAAGCGGGCGATGACGGTTTAT 117
Query 209 GGT---GGAGGAGGAGGAGGAGATGATTTAGCGGTGGTGAAGGCGGCGGCGTGGGCTTGG 265
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 GGTGGAGGAGGAGGAGGAGGAGATGATTTAGCGGCGGTGAAGGCGGCGGCGTGGGCTTGG 177
Query 266 TACTTACGGAAAGAAGGCAAACCGATTATGAGAGAGTTTGATGTAACGAGAGCA-CAAAG 324
||| |||||||||||||||||||||| ||||||||||||||| |||| |||||| | |||
Sbjct 178 TACCTACGGAAAGAAGGCAAACCGATCATGAGAGAGTTTGATCTAACAAGAGCATC-AAG 236
Query 325 AATACCTCGACCTTCACGGTACAAGATCGAAGCCACGAAGAACATGATCCTCTCTGAGAA 384
|| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 237 AACACCTCGACCTTCACGGTACAAGATCGAAGCAACGAAGAACAAGATCCTCTGTGAGAA 296
Query 385 TAGGGTTTTGGCCGAGAATAGGGTTTCTTCTACTAAGTCTCCGCTTTGGTACACGAATTA 444
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 297 TAGGGTTTTGGCCGAGAATAGGG--T-TTCTACTAAGTCTCCACTTTGGTACACGAATTA 353
Query 445 TCAATTTCGTGGGGATCAAGAAACGTATTACTCTCGTCTTCTTGATACTTACGAAACCAA 504
| ||||||||||||||||||||| | ||||||||||||||||| |||||||| | |||
Sbjct 354 CCCTTTTCGTGGGGATCAAGAAACGCAGTACTCTCGTCTTCTTGACACTTACGAGATCAA 413
Query 505 GAACATCTCCAAGAGGCTTAACATTGATGATTCTAGTTTCTCCACGAGTTTAAGTAGTGT 564
||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 414 GAACATCTCAAAGAGGCTTAACATTGATGATACTAGTTTCTCCGCGAGTTTAAGCAGTGT 473
Query 565 TTTGAAGCACAACGGCGATGATCATCATAATCATAATCGTAATGATGATTATGGTTTTGA 624
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTTGCGGCACAACGGCGATGATCATCATAATCATAATCGTAATGATGATTATGGTTTTGA 533
Query 625 TGATCATGGTTTGTTGAAGAAGAGAAATGGTAGTGACAGTAATACTACTACTAGAAGTAA 684
||||||||||||| || ||||||||||||||| || | ||| | ||||||||||||||
Sbjct 534 TGATCATGGTTTGCTGCAGAAGAGAAATGGTAAAGATAATAACAATACTACTAGAAGTAG 593
Query 685 AACAAATAATGACAAGAGTTATAATGGTGGCTTCATGAAAAAGGTGAGCAAGAGAAGTTT 744
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 AACAAACAATGACAAGAGTTATAATGGTGGCTTCATGAAAAAAGTGAGCAAGAGAAGTTT 653
Query 745 ATGGAAGGGAATGATTGTGATGGGTCCAGGGTCGACGGTTTGTGGGAGAAGTGATGACGT 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTGGAAGGGAATGATTGTGATGGGTCCAGGGTCGACGGTTTGTGGGAGAAGTGATGACGT 713
Query 805 GGCTTCGCAGGCCGGAAGGAGAACGGTTAAGGTTGCGGTGGCTGCAGAGGCTCTGGTCAG 864
|||||| |||||||| ||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 714 GGCTTCTCAGGCCGGCAGGAGAACGGTAAAGGTTGCGGCGGCGGCAGAGGCTCTGGTCAG 773
Query 865 GTCGGCGGCAAGTGGGAGTGGCAAGACTCAAAGTGGTCATTGCTAACTTTAGTGGTTCTT 924
||||||||||||||| ||||||||||||||||| | |||||||||||||||| ||
Sbjct 774 GTCGGCGGCAAGTGG------CAAGACTCAAAGTGGTCGTCGCTAACTTTAGTGGTTTTT 827
Query 925 -GGgttgttgaactttgaagactttttaggctggaa 959
|||||||||||||||||||||||||||||||||||
Sbjct 828 TGGGTTGTTGAACTTTGAAGACTTTTTAGGCTGGAA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5