BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66210.1 Length=2519 Score E Sequences producing significant alignments: (Bits) Value Ahg475724 jgi|Araly1|475724|fgenesh2_kg.2__854__AT1G66210.1 3775 0.0 > Ahg475724 jgi|Araly1|475724|fgenesh2_kg.2__854__AT1G66210.1 Length=2525 Score = 3775 bits (2044), Expect = 0.0 Identities = 2374/2533 (94%), Gaps = 23/2533 (1%) Strand=Plus/Plus Query 1 ATTATGCTTCTGGGATGCAAGCAGAGAGGACATTGTTGAGGAGGTTCAAGAA-TTTTAAA 59 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATTATGCTTCTGGGATGCAATCAGAGAGGACATTGTTGAGGAGGTTCAAGAATTTTTAAA 60 Query 60 AATTTATAATCTTGGAAGATTCTTCTAGGACAAGAATCTACCTCAACAACAACTCCTTAA 119 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 AA-TTATAATCTTGGAAGATTCTTCTAGGAAAAGAATCTACCTCAACAACAACTCCTTAA 119 Query 120 ATCCCAGACAAAACATGGAGTTGTCTTCTCTGATTG-TACCAAATAATAAGAAGCATTTT 178 |||||||||||||||||||||||||||||||||||| | | |||||||||||||||| || Sbjct 120 ATCCCAGACAAAACATGGAGTTGTCTTCTCTGATTGCT-CTAAATAATAAGAAGCATGTT 178 Query 179 GTAGTTGTGTTCATAGGTTTAGTATTAATCTTCAAGATAGCCTTAATTACTGCTGCCAAT 238 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 179 GTAGTTGTGTTCATAGGTTTAGTATTAATCTTCAACATAGCCTTAATTACTGCTGCCAAT 238 Query 239 GAGAAAAGCCAGATTTACACGGTGCATTTGGGTGAGAGGCAACATGATGATCCTAATATT 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 239 GAGAAAAGCCAGATTTACACGGTGCATTTGGGTGAGAGGCAACATGATGATCCTAATCTT 298 Query 299 GTAACTGAATCACATCATGATATTCTCGGACCACTTCTTGGAAGCAAAAAAGCTTCCCAT 358 || ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| | Sbjct 299 GTGACTGAATCACATCATGATATTCTAGGACCGCTTCTTGGAAGCAAAGAAGCTTCCCGT 358 Query 359 GAGTCTATGATTTATAGTTACAGACATGGTTTCTCAGGCTTTGCAGCGAAACTCACATCA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GAGTCTATGATTTATAGTTACAGACATGGTTTCTCAGGCTTTGCAGCGAAACTCACATCA 418 Query 419 TCTCAAGCAAGGGAACTTTCAGGGCATCCGGATGTTGTTCGCGTAACGAGAAGTAAGAAT 478 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 419 TCTCAAGCAAGGGAACTTTCTGGGCATCCGGATGTTGTTCACGTAACGAGAAGTAAGAAT 478 Query 479 ATGAAACTGAAAACAACAAGGGTTAGTGATTACTTGGGACTCACTTCAGCTGCTCCAACC 538 ||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||| Sbjct 479 ATGAAACTGAAAACAACAAGGGTTAATGATTACTTGGGACTCACTCCAACCGCTCCAACC 538 Query 539 GGTCTCCTCCATGAAACCGATATGGGAAGTGAAGCAATTGTTGGAATCCTGGACTCAGGA 598 ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 539 GGTCTCCTCCATGAAACCGCTATGGGAAGTGAAGCAATTGTAGGAATTCTGGACTCAGGA 598 Query 599 ATATGGCCAGATTCCAAGTCATTCAACGACAACGGTCTTGGACCAATCCCAACACGTTGG 658 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 599 ATATGGCCAGACTCCAAGTCATTCAACGACAACGGTCTTGGACCAATCCCGGCACGATGG 658 Query 659 AAAGGAAAATGTGTTTCAGCAGAAGCGTTCAACGCATCGAGCTGTAACAGAAAGTTGATT 718 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 659 AAAGGACAATGTGTTTCAGGAGAAGCGTTCAACGCATCGAGCTGTAACAGAAAGTTGATC 718 Query 719 GGAGCTATGTACTACTCAAAGGGTCTTGA-GAGTAAGTACAACGGATCGTTTAACGCGGC 777 ||||||| ||||||||| |||||||| | |||||||||||||||| |||| ||||||| Sbjct 719 GGAGCTACGTACTACTCTAAGGGTCTC-ATGAGTAAGTACAACGGAACGTTCAACGCGGT 777 Query 778 AGAGAAAGGTGAGGTTATGTCCCCTCTAGACAAAATTGGACACGGAACCCACTGTGCATC 837 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 778 AGAGAAAGGTGAGGTCATGTCCCCTCTAGACAAAATGGGACACGGAACCCACTGTGCATC 837 Query 838 GACAGCCGTGGGTTCTTTTGTCCCAGACGCAAATGTCCTCAGTCTAGCTCAAGGAACCGC 897 |||||||||||||||||| |||||||||||||| || | ||||||||||||||||||| Sbjct 838 GACAGCCGTGGGTTCTTTCGTCCCAGACGCAAACGTGTTTGGTCTAGCTCAAGGAACCGC 897 Query 898 GAGAGGAAGTGCCCCGCGGGCCCGTATAGCCTCTTACAAAGTGTGTTGGAACAACGAGGA 957 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GAGAGGAAGTGCACCGCGGGCCCGTATAGCCTCTTACAAAGTGTGTTGGAACAACGAGGA 957 Query 958 GTGTTTCACACCGGATATTGTAAAGGCCATTGATCATGCCATCCGTGATGGTGTCGATGT 1017 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 958 GTGTTTCACACCGGATATTGTAAAGGCCATAGACCATGCCATCCGTGATGGTGTCGATGT 1017 Query 1018 ACTATCGCTCTCGCTCGGATCTGAAGTACCTGTAGATTTTGAGGTTGATAG-AG-A-TGA 1074 | |||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||| Sbjct 1018 AATATCGCTCTCGCTCGGATCTGAAGTACCAGTTGATTTCGAGGTTGATAGCAGGAGTGA 1077 Query 1075 TTTCGCTATTGCTGCTTTCCACGCTGTTATGAAGGGAATTCCCGTGGTATGTGCTGGAGG 1134 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1078 TTTCGCTATTGCTGCTTTCCACGCTGTTATGAAGGGAATTCCCGTAGTATGTGCTGGAGG 1137 Query 1135 GAACGATGGTCCTGAAAAAGAAACCATCTCTAATGTTGCTCCGTGGCTCATAACTGTCGC 1194 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1138 GAACGATGGTCCTGACAAACAAACCATCTCTAATGTTGCTCCGTGGCTCATAACCGTCGC 1197 Query 1195 GGCTACGACCATGGACAGAGAATACTTCACGCCCATCACTCTTGGAAACAATATAACCTT 1254 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1198 GGCTACGACCATGGACAGAGAATTCTTCACGCCCATCACTCTTGGAAACAATATAACCTT 1257 Query 1255 ACTGGGTCAAGAAGGTCTATACATC-GGAGAAGAAGTTGGATTCACTGATCTTCTTTTCT 1313 | |||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| || Sbjct 1258 ATTGGGTCAAGAAGGTGTATACA-CAGGAAAAGAAGTTGGATTCACTGATCTTCTTTACT 1316 Query 1314 ACGACGACGTGACAAGAG-AGGATATGGAAGCCGGTAAAGCTACA-GGAAAAATCTTGTT 1371 ||| ||| |||||| || |||||||||||||||||||||||| | |||||||||||||| Sbjct 1317 TCGAAGACCTGACAA-AGGAGGATATGGAAGCCGGTAAAGCTA-ATGGAAAAATCTTGTT 1374 Query 1372 GTTCTTCCAAAGAGCCAATTTTGAAGACGATTTTGCAGCTTATGC-CAAATCAAAAGGTG 1430 |||||||||| |||||| | | |||||||||||| || ||||| ||| ||||| || | Sbjct 1375 TTTCTTCCAAACAGCCAAATATCAAGACGATTTTGTAGAATATGCGCAA-TCAAATGGCG 1433 Query 1431 CTGTTGGCGTCATTATCGCTACGCAGCCAACAGATAGTATCGATGCAAGCACCGTTGATA 1490 ||| |||||||||| |||||| |||||||||||||||||||||| || ||| || ||||| Sbjct 1434 CTGCTGGCGTCATTCTCGCTATGCAGCCAACAGATAGTATCGATCCAGGCAGCGCTGATA 1493 Query 1491 TCGC-TATTGCCTACGTAGACAACGAACTTGGCATGGACATTTTATTGTACATCCAAACA 1549 |||| || ||||| |||||| ||||| |||| |||||||||||||||||||||||||| Sbjct 1494 TCGCGTAC-GCCTATGTAGACTACGAAATTGGGATGGACATTTTATTGTACATCCAAACC 1552 Query 1550 ACCAAATCACCAATAGCTAAAATCAGTCCGACCAAGACGTTCGTTGGCCGACCTTTAGCG 1609 |||||||| ||| ||||||| |||||||| |||||||| || |||||||||||||||||| Sbjct 1553 ACCAAATCGCCAGTAGCTAAGATCAGTCCCACCAAGACTTTTGTTGGCCGACCTTTAGCG 1612 Query 1610 ACCAAGGTCGCTAGATTTTCTTCTAGAGGTCCCAATTCACTATCTCCTGTCATTCTCAAG 1669 |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1613 ACCAAGGTTGCTAGATTTTCGTCTAGAGGTCCCAATTCACTATCTCCTGCCATTCTCAAG 1672 Query 1670 CCGGATATAGCAGCACCAGGTTCAGGTATACTCGCAGCCGTACCAACAGGGGGAGGATAC 1729 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1673 CCGGATATAGCAGCACCAGGTTCAGGTATACTCGCAGCCGTACCATCAGGGGCAGGATAC 1732 Query 1730 GATTTCATGTCAGGAACATCAATGTCTACACCTGTCGTGTCAGGAATAGTCGCACTTCTT 1789 || || |||||||||||||| ||| |||||||||| |||||||||||||||||||||||| Sbjct 1733 GAATTAATGTCAGGAACATCGATGGCTACACCTGTAGTGTCAGGAATAGTCGCACTTCTT 1792 Query 1790 AGaaaaaaaCGCCCCGACTGGTCTCCTGCAGCGATCCGATCTGCTCTCGTCACAACCGCG 1849 ||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 1793 AGACAAAAACGCCCCGACTGGTCTCCTGCCGCAATCCGATCCGCTCTCGTCACAACCGCG 1852 Query 1850 TTACAAACCGACCCATCGGGAGAGCCTATCGCAGCCGAGGGTTCCCCACGCAAACTCGCC 1909 || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1853 TTGCAAACCGACCCTTCGGGAGAGCCTATTGCAGCCGAGGGTTCCCCACGCAAACTGGCC 1912 Query 1910 GACCCGTTTGACTATGGAGGCGGCCTTGTAAACCCGGTGAAAGTAGCGGACCCAGGACTT 1969 ||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||| Sbjct 1913 GACCCATTTGACTATGGAGGCGGCCTAGTAAACCCGGGGAAAGTAGCGGACCCGGGACTT 1972 Query 1970 GTTTACGACATGGGCCACGATGAATATGTTCATTACTTGTGCTCCGCAGGCTATGACAAC 2029 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1973 GTCTACGACATGGGCCACGATGAATATGTTCATTACTTGTGCTCCGCAGGCTACGACAAT 2032 Query 2030 ACATCCATCTCAAAACTACTTGGAGAAATCTACACTTGCCCTACCCCAATTCCATCAATG 2089 ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 2033 ACATCAATCTCAAAACTACTTGGAAAAATCTACACTTGCCCTTCCCCAATTCCATCAATG 2092 Query 2090 CTTGATGTCAACATGCCTTCCATCACAATCCCATATCTTAGTGAAGAGATCACAATAACA 2149 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2093 CTTGATGTCAACTTGCCTTCCATCACAATCCCATATCTTAGTGAAGAGATCACAATAACA 2152 Query 2150 AGAACTGTGACGAATGTTGGGCCGGTTGGTTCGGTTTACAAAGCTGTGATCCAAGCGCCT 2209 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 2153 AGAACCGTGACGAATGTTGGACCGGTCGGTTCGGTTTACAAAGCTGTGATCCAAGCGCCT 2212 Query 2210 CAAGGTATTAACCTTCAGGTTAGTCCTGAGACTCTTGAATTCGGTTCCAACACTAACAAG 2269 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2213 CAAGGTATTAACCTTCAGGTGAGTCCTGAGACTCTTGAATTCGGTTCCAACACTAACAAG 2272 Query 2270 ACTACGTTCACGGTGAAAGTCTCCACGACTCATAGAGCGAATACTGATTATCTCTTTGGG 2329 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2273 ATTACCTTCACGGTGAAAGTCTCCACGACTCATAGAGCGAATACTGATTATCTCTTTGGG 2332 Query 2330 AGCTTGACTTGGGCCGACAATGAAGGCCATAATGTAAGAATCCCTCTTTCTGTGAGAACA 2389 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2333 AGCTTAACTTGGACCGACAATGAAGGCCATAATGTAAGAATCCCTCTTTCTGTGAGAACA 2392 Query 2390 AGAGTTTTCAACTTCAAGATCTAACAAAATTGTTAACACTATTGTATTATACTTTGT--- 2446 |||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||| | Sbjct 2393 AGAGTTTTAAACTTCAAGATCTAACAAAATTATTAACATTATTGTATAATATTTTTTATT 2452 Query 2447 GTAAGTAAA-GTGTATCATAATCTGTTTTCTTTCGGAGGCAATGTAAATGTGATAAGAAA 2505 ||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2453 GTACTTAAAAGTGTATTATAATTTGTTTTCTTTCGGAGGCAATGTAAATGTGATAAGAAA 2512 Query 2506 GCCtttttttATC 2518 ||||||||||||| Sbjct 2513 GCCTTTTTTTATC 2525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94958980785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5