BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66210.1
Length=2519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475724 jgi|Araly1|475724|fgenesh2_kg.2__854__AT1G66210.1 3775 0.0
> Ahg475724 jgi|Araly1|475724|fgenesh2_kg.2__854__AT1G66210.1
Length=2525
Score = 3775 bits (2044), Expect = 0.0
Identities = 2374/2533 (94%), Gaps = 23/2533 (1%)
Strand=Plus/Plus
Query 1 ATTATGCTTCTGGGATGCAAGCAGAGAGGACATTGTTGAGGAGGTTCAAGAA-TTTTAAA 59
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATTATGCTTCTGGGATGCAATCAGAGAGGACATTGTTGAGGAGGTTCAAGAATTTTTAAA 60
Query 60 AATTTATAATCTTGGAAGATTCTTCTAGGACAAGAATCTACCTCAACAACAACTCCTTAA 119
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AA-TTATAATCTTGGAAGATTCTTCTAGGAAAAGAATCTACCTCAACAACAACTCCTTAA 119
Query 120 ATCCCAGACAAAACATGGAGTTGTCTTCTCTGATTG-TACCAAATAATAAGAAGCATTTT 178
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||
Sbjct 120 ATCCCAGACAAAACATGGAGTTGTCTTCTCTGATTGCT-CTAAATAATAAGAAGCATGTT 178
Query 179 GTAGTTGTGTTCATAGGTTTAGTATTAATCTTCAAGATAGCCTTAATTACTGCTGCCAAT 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 GTAGTTGTGTTCATAGGTTTAGTATTAATCTTCAACATAGCCTTAATTACTGCTGCCAAT 238
Query 239 GAGAAAAGCCAGATTTACACGGTGCATTTGGGTGAGAGGCAACATGATGATCCTAATATT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GAGAAAAGCCAGATTTACACGGTGCATTTGGGTGAGAGGCAACATGATGATCCTAATCTT 298
Query 299 GTAACTGAATCACATCATGATATTCTCGGACCACTTCTTGGAAGCAAAAAAGCTTCCCAT 358
|| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
Sbjct 299 GTGACTGAATCACATCATGATATTCTAGGACCGCTTCTTGGAAGCAAAGAAGCTTCCCGT 358
Query 359 GAGTCTATGATTTATAGTTACAGACATGGTTTCTCAGGCTTTGCAGCGAAACTCACATCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGTCTATGATTTATAGTTACAGACATGGTTTCTCAGGCTTTGCAGCGAAACTCACATCA 418
Query 419 TCTCAAGCAAGGGAACTTTCAGGGCATCCGGATGTTGTTCGCGTAACGAGAAGTAAGAAT 478
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 419 TCTCAAGCAAGGGAACTTTCTGGGCATCCGGATGTTGTTCACGTAACGAGAAGTAAGAAT 478
Query 479 ATGAAACTGAAAACAACAAGGGTTAGTGATTACTTGGGACTCACTTCAGCTGCTCCAACC 538
||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||
Sbjct 479 ATGAAACTGAAAACAACAAGGGTTAATGATTACTTGGGACTCACTCCAACCGCTCCAACC 538
Query 539 GGTCTCCTCCATGAAACCGATATGGGAAGTGAAGCAATTGTTGGAATCCTGGACTCAGGA 598
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 539 GGTCTCCTCCATGAAACCGCTATGGGAAGTGAAGCAATTGTAGGAATTCTGGACTCAGGA 598
Query 599 ATATGGCCAGATTCCAAGTCATTCAACGACAACGGTCTTGGACCAATCCCAACACGTTGG 658
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 599 ATATGGCCAGACTCCAAGTCATTCAACGACAACGGTCTTGGACCAATCCCGGCACGATGG 658
Query 659 AAAGGAAAATGTGTTTCAGCAGAAGCGTTCAACGCATCGAGCTGTAACAGAAAGTTGATT 718
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAAGGACAATGTGTTTCAGGAGAAGCGTTCAACGCATCGAGCTGTAACAGAAAGTTGATC 718
Query 719 GGAGCTATGTACTACTCAAAGGGTCTTGA-GAGTAAGTACAACGGATCGTTTAACGCGGC 777
||||||| ||||||||| |||||||| | |||||||||||||||| |||| |||||||
Sbjct 719 GGAGCTACGTACTACTCTAAGGGTCTC-ATGAGTAAGTACAACGGAACGTTCAACGCGGT 777
Query 778 AGAGAAAGGTGAGGTTATGTCCCCTCTAGACAAAATTGGACACGGAACCCACTGTGCATC 837
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 778 AGAGAAAGGTGAGGTCATGTCCCCTCTAGACAAAATGGGACACGGAACCCACTGTGCATC 837
Query 838 GACAGCCGTGGGTTCTTTTGTCCCAGACGCAAATGTCCTCAGTCTAGCTCAAGGAACCGC 897
|||||||||||||||||| |||||||||||||| || | |||||||||||||||||||
Sbjct 838 GACAGCCGTGGGTTCTTTCGTCCCAGACGCAAACGTGTTTGGTCTAGCTCAAGGAACCGC 897
Query 898 GAGAGGAAGTGCCCCGCGGGCCCGTATAGCCTCTTACAAAGTGTGTTGGAACAACGAGGA 957
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGAGGAAGTGCACCGCGGGCCCGTATAGCCTCTTACAAAGTGTGTTGGAACAACGAGGA 957
Query 958 GTGTTTCACACCGGATATTGTAAAGGCCATTGATCATGCCATCCGTGATGGTGTCGATGT 1017
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 958 GTGTTTCACACCGGATATTGTAAAGGCCATAGACCATGCCATCCGTGATGGTGTCGATGT 1017
Query 1018 ACTATCGCTCTCGCTCGGATCTGAAGTACCTGTAGATTTTGAGGTTGATAG-AG-A-TGA 1074
| |||||||||||||||||||||||||||| || ||||| ||||||||||| || | |||
Sbjct 1018 AATATCGCTCTCGCTCGGATCTGAAGTACCAGTTGATTTCGAGGTTGATAGCAGGAGTGA 1077
Query 1075 TTTCGCTATTGCTGCTTTCCACGCTGTTATGAAGGGAATTCCCGTGGTATGTGCTGGAGG 1134
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 TTTCGCTATTGCTGCTTTCCACGCTGTTATGAAGGGAATTCCCGTAGTATGTGCTGGAGG 1137
Query 1135 GAACGATGGTCCTGAAAAAGAAACCATCTCTAATGTTGCTCCGTGGCTCATAACTGTCGC 1194
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 GAACGATGGTCCTGACAAACAAACCATCTCTAATGTTGCTCCGTGGCTCATAACCGTCGC 1197
Query 1195 GGCTACGACCATGGACAGAGAATACTTCACGCCCATCACTCTTGGAAACAATATAACCTT 1254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGCTACGACCATGGACAGAGAATTCTTCACGCCCATCACTCTTGGAAACAATATAACCTT 1257
Query 1255 ACTGGGTCAAGAAGGTCTATACATC-GGAGAAGAAGTTGGATTCACTGATCTTCTTTTCT 1313
| |||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| ||
Sbjct 1258 ATTGGGTCAAGAAGGTGTATACA-CAGGAAAAGAAGTTGGATTCACTGATCTTCTTTACT 1316
Query 1314 ACGACGACGTGACAAGAG-AGGATATGGAAGCCGGTAAAGCTACA-GGAAAAATCTTGTT 1371
||| ||| |||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1317 TCGAAGACCTGACAA-AGGAGGATATGGAAGCCGGTAAAGCTA-ATGGAAAAATCTTGTT 1374
Query 1372 GTTCTTCCAAAGAGCCAATTTTGAAGACGATTTTGCAGCTTATGC-CAAATCAAAAGGTG 1430
|||||||||| |||||| | | |||||||||||| || ||||| ||| ||||| || |
Sbjct 1375 TTTCTTCCAAACAGCCAAATATCAAGACGATTTTGTAGAATATGCGCAA-TCAAATGGCG 1433
Query 1431 CTGTTGGCGTCATTATCGCTACGCAGCCAACAGATAGTATCGATGCAAGCACCGTTGATA 1490
||| |||||||||| |||||| |||||||||||||||||||||| || ||| || |||||
Sbjct 1434 CTGCTGGCGTCATTCTCGCTATGCAGCCAACAGATAGTATCGATCCAGGCAGCGCTGATA 1493
Query 1491 TCGC-TATTGCCTACGTAGACAACGAACTTGGCATGGACATTTTATTGTACATCCAAACA 1549
|||| || ||||| |||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1494 TCGCGTAC-GCCTATGTAGACTACGAAATTGGGATGGACATTTTATTGTACATCCAAACC 1552
Query 1550 ACCAAATCACCAATAGCTAAAATCAGTCCGACCAAGACGTTCGTTGGCCGACCTTTAGCG 1609
|||||||| ||| ||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 1553 ACCAAATCGCCAGTAGCTAAGATCAGTCCCACCAAGACTTTTGTTGGCCGACCTTTAGCG 1612
Query 1610 ACCAAGGTCGCTAGATTTTCTTCTAGAGGTCCCAATTCACTATCTCCTGTCATTCTCAAG 1669
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1613 ACCAAGGTTGCTAGATTTTCGTCTAGAGGTCCCAATTCACTATCTCCTGCCATTCTCAAG 1672
Query 1670 CCGGATATAGCAGCACCAGGTTCAGGTATACTCGCAGCCGTACCAACAGGGGGAGGATAC 1729
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1673 CCGGATATAGCAGCACCAGGTTCAGGTATACTCGCAGCCGTACCATCAGGGGCAGGATAC 1732
Query 1730 GATTTCATGTCAGGAACATCAATGTCTACACCTGTCGTGTCAGGAATAGTCGCACTTCTT 1789
|| || |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 1733 GAATTAATGTCAGGAACATCGATGGCTACACCTGTAGTGTCAGGAATAGTCGCACTTCTT 1792
Query 1790 AGaaaaaaaCGCCCCGACTGGTCTCCTGCAGCGATCCGATCTGCTCTCGTCACAACCGCG 1849
||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1793 AGACAAAAACGCCCCGACTGGTCTCCTGCCGCAATCCGATCCGCTCTCGTCACAACCGCG 1852
Query 1850 TTACAAACCGACCCATCGGGAGAGCCTATCGCAGCCGAGGGTTCCCCACGCAAACTCGCC 1909
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1853 TTGCAAACCGACCCTTCGGGAGAGCCTATTGCAGCCGAGGGTTCCCCACGCAAACTGGCC 1912
Query 1910 GACCCGTTTGACTATGGAGGCGGCCTTGTAAACCCGGTGAAAGTAGCGGACCCAGGACTT 1969
||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 1913 GACCCATTTGACTATGGAGGCGGCCTAGTAAACCCGGGGAAAGTAGCGGACCCGGGACTT 1972
Query 1970 GTTTACGACATGGGCCACGATGAATATGTTCATTACTTGTGCTCCGCAGGCTATGACAAC 2029
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1973 GTCTACGACATGGGCCACGATGAATATGTTCATTACTTGTGCTCCGCAGGCTACGACAAT 2032
Query 2030 ACATCCATCTCAAAACTACTTGGAGAAATCTACACTTGCCCTACCCCAATTCCATCAATG 2089
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2033 ACATCAATCTCAAAACTACTTGGAAAAATCTACACTTGCCCTTCCCCAATTCCATCAATG 2092
Query 2090 CTTGATGTCAACATGCCTTCCATCACAATCCCATATCTTAGTGAAGAGATCACAATAACA 2149
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 CTTGATGTCAACTTGCCTTCCATCACAATCCCATATCTTAGTGAAGAGATCACAATAACA 2152
Query 2150 AGAACTGTGACGAATGTTGGGCCGGTTGGTTCGGTTTACAAAGCTGTGATCCAAGCGCCT 2209
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2153 AGAACCGTGACGAATGTTGGACCGGTCGGTTCGGTTTACAAAGCTGTGATCCAAGCGCCT 2212
Query 2210 CAAGGTATTAACCTTCAGGTTAGTCCTGAGACTCTTGAATTCGGTTCCAACACTAACAAG 2269
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CAAGGTATTAACCTTCAGGTGAGTCCTGAGACTCTTGAATTCGGTTCCAACACTAACAAG 2272
Query 2270 ACTACGTTCACGGTGAAAGTCTCCACGACTCATAGAGCGAATACTGATTATCTCTTTGGG 2329
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 ATTACCTTCACGGTGAAAGTCTCCACGACTCATAGAGCGAATACTGATTATCTCTTTGGG 2332
Query 2330 AGCTTGACTTGGGCCGACAATGAAGGCCATAATGTAAGAATCCCTCTTTCTGTGAGAACA 2389
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 AGCTTAACTTGGACCGACAATGAAGGCCATAATGTAAGAATCCCTCTTTCTGTGAGAACA 2392
Query 2390 AGAGTTTTCAACTTCAAGATCTAACAAAATTGTTAACACTATTGTATTATACTTTGT--- 2446
|||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||| |
Sbjct 2393 AGAGTTTTAAACTTCAAGATCTAACAAAATTATTAACATTATTGTATAATATTTTTTATT 2452
Query 2447 GTAAGTAAA-GTGTATCATAATCTGTTTTCTTTCGGAGGCAATGTAAATGTGATAAGAAA 2505
||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2453 GTACTTAAAAGTGTATTATAATTTGTTTTCTTTCGGAGGCAATGTAAATGTGATAAGAAA 2512
Query 2506 GCCtttttttATC 2518
|||||||||||||
Sbjct 2513 GCCTTTTTTTATC 2525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94958980785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5