BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66220.1
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475725 jgi|Araly1|475725|fgenesh2_kg.2__855__AT1G66220.1 3241 0.0
> Ahg475725 jgi|Araly1|475725|fgenesh2_kg.2__855__AT1G66220.1
Length=2262
Score = 3241 bits (1755), Expect = 0.0
Identities = 2107/2276 (93%), Gaps = 28/2276 (1%)
Strand=Plus/Plus
Query 1 ATGGGCAATTCTTTTCTGATTGCAGATACAAGTTCTCTAGTTATCGGTCTTTTGTTAATC 60
|||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1 ATGGACAATTCTTTTCTGATTGCAGATACAAGTTCTCTGGTCATCGGTCTCGTGTTAATC 60
Query 61 CTGAACGGAGTGTTTATCTCTGCGGCA-AAACACTATGGCTTGAACAAGATTCACATTGT 119
|||||||| ||||||||||||||||| || || |||| ||||||||||||||||||||
Sbjct 61 CTGAACGGTTTGTTTATCTCTGCGGCACAACCA-AATGGATTGAACAAGATTCACATTGT 119
Query 120 ACACTTGGGAGCAAAGCAACACGATACCCCTGAGCTGGTTACTAAGTCACATTACCAAAT 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACACTTGGGAGCAAAGCAACATGATACCCCTGAGCTGGTTACTAAGTCACATTACCAAAT 179
Query 180 TCTTGAACCACTTCTTGGAAGCAAAGAAGCAGCCAA-GAATTCTTTAGTATACAATTACA 238
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 180 TCTTGAACCACTTCTTGGAAGCAAAGAAGCTG-CAAGGAATTCTTTAGTATACAATTACA 238
Query 239 AGCATGGCTTTTCCGGCTTTGCAGCAAAACTTACCGCCTCTCAAGCAAAGAATCTTTCAG 298
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 239 AGCATGGTTTTTCCGGCTTTGCAGCGAAACTTACCGCCTCTCAAGCAAAGAACCTTTCAG 298
Query 299 CGCATCCCGAGGTTC-TTCGTGTTGTACCAAGTCGAGTAATGAGGTTGAAAACAACAAGA 357
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGCATCCCGAGGTTCTTTC-TGTTGTACCAAGTCGAGTAATGAGGTTGAAAACAACAAGG 357
Query 358 ACATTTGATTACTTGGGACTTTTGCCTACTTCTCCAAAAAGTCTTCTACATAAAACCAAG 417
|||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||| |
Sbjct 358 ACATTTGATTACTTGGGACTTTCACTTACTTCTCCAAAAGGTCTTCTACATGAAACCAGG 417
Query 418 ATGGGAAGTGAAGCTATTATTGGGGTCATAGACTCAGGGATATGGCCAGAGTCACAGTCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGGGAAGTGAAGCTATTATTGGGGTCATAGACTCAGGGATATGGCCAGAGTCACAGTCA 477
Query 478 TTCAATGACACAGGTCTAGGACCGATCCCGAAGCGTTGGAAGGGAAAATGTTTGTCTGGA 537
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 478 TTCAATGACACAGGTCTAGGACCGATCCCGAAGCATTGGAAGGGAAAATGTGTGTCAGGA 537
Query 538 AATGGATTTGACGCCAAAAAACATTGCAACAAAAAACTTATAGGGGCCGAGTACTTGACC 597
||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 538 AATGGATTTGACGCCAATAAACATTGCAACAAAAAACTTATAGGGGCAGAGTTCTTCACT 597
Query 598 GTAGGTCTTATGGAAAT-GACGGAT-GGGATATATGACTATCCTTCACTA-GGTGAGTCT 654
| ||||||| | | ||| || || |||| |||||| | | ||||| | | |||||||
Sbjct 598 GAAGGTCTTCTTG-AATCCACAAATGGGGA-ATATGATTTTGTTTCAC-ATGATGAGTCT 654
Query 655 ATGTCCCCTAGAGATCA-TGTAGGCCATGGGACACACGTGGCTGCAATTGCTGCTGGTTC 713
| ||||||||||||| | || ||||||||||||||| ||| |||||||||||||||||||
Sbjct 655 AAGTCCCCTAGAGAT-ATTGAAGGCCATGGGACACATGTGTCTGCAATTGCTGCTGGTTC 713
Query 714 TTTTGTGGCTAATGCAAACTATAAAGGACTAGCTGGAGGAACCGCTAGAGGCGCGGCTCC 773
||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 714 TTTTGTGGCTACTGCAAACTACAATGGACTAGCTGGAGGAACCGCTAGAGGCGCGGCTCC 773
Query 774 TCATGCACGTATAGCTATGTACAAGGTATGTTGG-AGGGAAGTTGGATGTATAACAGCTG 832
|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||
Sbjct 774 TCATGCACGTATAGCTATGTACAAGGCATGTTGGAAGGG-AGTTGGATGTATAACACCTG 832
Query 833 ATCTACTCAAAGCAATTGATCATAGTATACGCGATGGTGTTGATGTTATATCCATTTCAA 892
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 833 ATATGCTCAAAGCAATTGATCATAGTATACGCGATGGGGTTGATGTTATATCCATTTCAA 892
Query 893 TTGGTACTGACGCGCCAGCAAGTTTTGATATTGATCAAAGTGACATTGGTTTTGGTTCAT 952
||||||||||||| || ||||||||||||||||||||||||||||| | || ||||| |
Sbjct 893 TTGGTACTGACGCCCCTGCAAGTTTTGATATTGATCAAAGTGACATCGCATTCGGTTCTT 952
Query 953 TCCACGCCGTGATGAAAGGCATTCCCGTTGTTGCTTCTGCTGGAAACGAAGGACCTAACG 1012
|||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 953 TCCAAGCTGTGATGAAAGGCATTCCCGTTGTTGCTTCTGCTGGAAACGAGGGTCCTAACG 1012
Query 1013 CTCAAACCGTCGATAATGTTGCTCCATGGATCATAACCGTCGCCGCTACATCCCTAGACC 1072
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 CTCAAACCATTGATAATGTTGCTCCATGGATCATAACCGTCGCCGCTACATCCCTCGACC 1072
Query 1073 GTTCTTTCCCGATACCGATAACTCTTGGAAACAATCTAACTATTCTCGGTGAAGGTTTAA 1132
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GTTCTTTCCCCATACCAATCACTCTTGGAAACAATCTAACTATTCTCGGTGAAGGTTTAA 1132
Query 1133 ACACATTCCCAGAAGTTGGATTTACTAATCTTATATTATCAGATGAAATGTTGAGCAG-A 1191
||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||| |
Sbjct 1133 ACACATTCCCAGAAGCTGGATTTACTGATCTTATACTATCAGATGAAATGATGAGC-GCC 1191
Query 1192 TCTATCGAACAGGGGAAAACTCAAGGGACCATTGTCCTTGCGTTTACGGCAAACGATGA- 1250
||||||||||||||| ||||||||||||| ||||| || ||||||||| ||||||||||
Sbjct 1192 TCTATCGAACAGGGGCAAACTCAAGGGACTATTGTGCTAGCGTTTACGCCAAACGATGAC 1251
Query 1251 GATGATAAGAAAGGCGAATAGCATAACCAA-TGCTGGATGTGCTGGTATAATCTATGCAC 1309
| ||||||||||||||||| ||| | || |||||||||||||||||||| |||||||
Sbjct 1252 G-CGATAAGAAAGGCGAATACCAT-AGTAAGAGCTGGATGTGCTGGTATAATTTATGCAC 1309
Query 1310 AATCTGTGATTGATCCTACGGTTTGTAGTAG-CGTTGATGTTCCTTGCGCCGTGGTAGAT 1368
||||||| ||||||||||||||||| ||| | ||| |||||||||||||||||||||||
Sbjct 1310 AATCTGTTATTGATCCTACGGTTTGCAGT-GACGTCCATGTTCCTTGCGCCGTGGTAGAT 1368
Query 1369 TATGAATATGGAACCGACATCTTATACTACATGCAGACCACAGTA-GTGCCTAAAGCAAA 1427
|| ||||| ||||| |||||||||||||| || |||||||||| | ||||||||||||||
Sbjct 1369 TACGAATACGGAACTGACATCTTATACTATATTCAGACCACAG-ATGTGCCTAAAGCAAA 1427
Query 1428 ACTAAGCCCTTCCAAGACACTCATTGGCCGACCTATTGCTTCTAGAGTGCCTCGTTTCTC 1487
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1428 AATAAGCCCTTCCAAGACACTCATTGGCCGGCCTATTGCATCTAGAGTGCCTCGTTTCTC 1487
Query 1488 TTGTAGAGGACCTAATTCAGTTTCACCAGCAATTCTTAAGCCAGACATAGCAGCACCGGG 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TTGTAGAGGACCTAATTCAGTTTCACCAGCAATTCTTAAGCCAGACATAGCAGCACCGGG 1547
Query 1548 TGTTAATGTTCTTTCTGCAGTATCTGGTGTGTATAAGTTCATGTCGGGAACATCAATGGC 1607
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1548 TGTTAATGTTCTTTCTGCAGTAACTGGTGTGTATAAGTTCATGTCGGGAACCTCAATGGC 1607
Query 1608 GACTCCTGCTGTGTCGGGAATCGTTGGATTACTAAGACAAACACACCCTCACTGGTCTCC 1667
|||||||| |||||||||||| |||||||||||||||||||| | |||| ||||||||||
Sbjct 1608 GACTCCTGTTGTGTCGGGAATTGTTGGATTACTAAGACAAACCCGCCCTGACTGGTCTCC 1667
Query 1668 AGCTGCAATCCGATCCGCTCTTGTCACAACAGCATGGAAGACCGATCCATCTGGAGAGCC 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGCTGCAATCCGATCCGCTCTTGTCACAACAGCATGGAAGACCGATCCATCTGGAGAGCC 1727
Query 1728 AATATTTTCAGAGGGATCAACACGTAAACTTGCTGACCCATTTGACTATGGAGGTGGTTT 1787
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AATATTTTCAGAGGGATCAACGCGTAAACTTGCTGACCCATTTGACTATGGAGGTGGTTT 1787
Query 1788 GATCAACCCAGAGAAAGTAACACACCCGGGCCTCATCTACGACATGGGTATCGATGACTA 1847
||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1788 GATCAACCCGGAGAAAGTAACAGACCCGGGCCTCATCTACGACATGGGTATAGATGACTA 1847
Query 1848 TCTTCATTACCTTTGTTCTGCCGAATACGATGATG-ATTCCATTTCAAAACTACTTGGTA 1906
||||||||||||||||||||| ||||| || ||| || ||||||| |||||||||||||
Sbjct 1848 TCTTCATTACCTTTGTTCTGCGGAATATGACAATGCAT-CCATTTCCAAACTACTTGGTA 1906
Query 1907 AAACTTACAATTGCACTTCGCCAAAGCCATCGATGCTCGACTTCAACTTGCCTTCCATTA 1966
|||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1907 AAACATACAAATGCACTTATCCAAAGCCATCGATGCTCGACTTCAACTTGCCTTCGATCA 1966
Query 1967 CAATCCCAAGTCTCACTGGAGAGGTCACTGTGACAAGAACCGTGAGAAATGTTGGACCGG 2026
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1967 CAATCCCAAGTCTCACTGGAGAGGTCACTGTGACTAGAACCGTGACAAATGTTGGACCGG 2026
Query 2027 CCCGTTCAGTCTACAGACCAGTGATTGAGTCTCCTCTTGGTATCGAGCTTGATGTGAAAC 2086
|| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
Sbjct 2027 CCAGTTCAGTCTACAGACCCGTGATTGAGTCTCCTTTTGGTATCGAGCTTGACGTGAATC 2086
Query 2087 CGAAGACTCTTGTGTTTGGTTCCAACATAACAAAGATTACTTTTAGTGTGAGAGTGAAAT 2146
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2087 CGAAGACTCTTGTGTTTGGTTCCAACATAACGAAGATTACGTTTAGTGTGAGAGTGAAAA 2146
Query 2147 CGAGTCATAGAGTTAACACTGATTTTTATTTTGGGAGCTTGTGTTGGACCGATGGAGTTC 2206
||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2147 CGAGTCATAGAGTGAACACTGATTACTATTTTGGGAGCTTGTGTTGGACTGATGGAGTTC 2206
Query 2207 ATAATGTCACTATTCCTGTTTCCGTGAGAACAAAGTTCATGAGGAACTATGTTTGA 2262
|||| ||| ||| |||||||||||||||||||||| || |||| || |||||||||
Sbjct 2207 ATAACGTCTCTACTCCTGTTTCCGTGAGAACAAAGATCTTGAGAAATTATGTTTGA 2262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85169787820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5