BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66230.1 Length=1186 Score E Sequences producing significant alignments: (Bits) Value Ahg925774 jgi|Araly1|925774|scaffold_201335.1 723 0.0 > Ahg925774 jgi|Araly1|925774|scaffold_201335.1 Length=908 Score = 723 bits (391), Expect = 0.0 Identities = 448/476 (94%), Gaps = 2/476 (0%) Strand=Plus/Plus Query 150 gagagagagagagagagaAATGGGGAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 209 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2 GAGAGGGAGAGAGAGAGAAATGGGAAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 61 Query 210 AGGACCATGGACTGCAGAAGAGGATAGGAAGCTCATAAACTTCATCCTTACCAATGGACA 269 ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 62 AGGACCATGGACTGCAGAAGAAGACATGAAGCTCATAAACTTCATCCTTACCAATGGACA 121 Query 270 ATGTTGTTGGAGAGCTGTTCCTAAGCTTTCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 329 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 122 ATGTTGTTGGAGAGCTGTTCCTAAGCTTGCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 181 Query 330 ACTTCGTTGGACTAACTATCTTAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTACGA 389 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 182 ACTTCGTTGGACCAACTATCTCAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTATGA 241 Query 390 AGAGAAGATGGTCATTGATCTCCATTCCCAGCTTGGAAACAGGTGGTCAAAGATAGCTTC 449 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 242 GGAGAAGATGGTCATTGATCTCCATTCCCAGCTCGGAAATAGGTGGTCAAAGATAGCTTC 301 Query 450 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCACATCAAGAA 509 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 302 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCATATCAAGAA 361 Query 510 GAAGTTGAGGAAAATGGGGATTGATCCTCTTACACATAAACCACTCTCTATCGTCGAAAA 569 |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 362 GAAGTTAAGGAAAATGGGGATTGATCCTCTCACTCATAAACCACTCTCTATCGTCGAACA 421 Query 570 AGAAGACGAAGAACCCTTAAAGAAGCTACAGAATAATACAGTT-CCTTTTCAAGAA 624 |||||| ||||||||| |||||||| | ||||| ||| || | ||| | |||||| Sbjct 422 AGAAGATGAAGAACCCGTAAAGAAGTTGCAGAA-AATTCAAATGCCTATACAAGAA 476 Score = 501 bits (271), Expect = 5e-141 Identities = 355/393 (90%), Gaps = 16/393 (4%) Strand=Plus/Plus Query 648 CAACATCAAGAACATATCAAGACTTGAAGAGTCTTTAGGTGATGATCAATTCATGGAGAT 707 ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 530 CAACATCAAGAACATGTCAAGACTTGGAGAGTCTTTAGATGATGATCAATTCATGGCGAT 589 Query 708 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTTATTGAAACAGAGTCTTTAGACCTTAT 767 ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct 590 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTGATTGATCCAGAATCTTTAGAGCTTAT 649 Query 768 CTGCAGCAATTCAACAATGTCTTCATCCACGTCCACATCTTCGCATTCTTCTAATGATTC 827 |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 650 TTGCAGCAACTCAACAATGTCTTCATCCACGTCCACCTCTTCGAATTCTTCTAATGATTC 709 Query 828 GAGTTTCTTGAAGGATTTGCAGTTCCCGGAGTTCGAGTGGTCCGACTATGGTAATAGTAA 887 |||||||||||||||||||||||| |||| |||||||||||| | || || |||| Sbjct 710 GAGTTTCTTGAAGGATTTGCAGTTTACGGATTTCGAGTGGTCC-A--AT--TACG-GTAA 763 Query 888 TAATGATAATAATAATGGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 947 | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 CA--G-TAATAAT---GGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 817 Query 948 AATT-AGTGACTTTAGCAGTTTGGATTTGCTGCTTAATGATGAGAGTTCTTCCACTTTTG 1006 ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 818 TATTGA-TGACTTTAGCAGTTTGGATTTGCTGCTAAATGATGAGAGTTCTTCCACTTTTG 876 Query 1007 GGTTGTTTTGAATTCATTCTTAA-GAATATGGT 1038 |||||||||||||||||| |||| | ||||||| Sbjct 877 GGTTGTTTTGAATTCATT-TTAAAGTATATGGT 908 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44260706637 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5