BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66230.1
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925774 jgi|Araly1|925774|scaffold_201335.1 723 0.0
> Ahg925774 jgi|Araly1|925774|scaffold_201335.1
Length=908
Score = 723 bits (391), Expect = 0.0
Identities = 448/476 (94%), Gaps = 2/476 (0%)
Strand=Plus/Plus
Query 150 gagagagagagagagagaAATGGGGAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 209
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2 GAGAGGGAGAGAGAGAGAAATGGGAAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 61
Query 210 AGGACCATGGACTGCAGAAGAGGATAGGAAGCTCATAAACTTCATCCTTACCAATGGACA 269
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 62 AGGACCATGGACTGCAGAAGAAGACATGAAGCTCATAAACTTCATCCTTACCAATGGACA 121
Query 270 ATGTTGTTGGAGAGCTGTTCCTAAGCTTTCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 329
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 ATGTTGTTGGAGAGCTGTTCCTAAGCTTGCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 181
Query 330 ACTTCGTTGGACTAACTATCTTAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTACGA 389
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 182 ACTTCGTTGGACCAACTATCTCAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTATGA 241
Query 390 AGAGAAGATGGTCATTGATCTCCATTCCCAGCTTGGAAACAGGTGGTCAAAGATAGCTTC 449
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 242 GGAGAAGATGGTCATTGATCTCCATTCCCAGCTCGGAAATAGGTGGTCAAAGATAGCTTC 301
Query 450 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCACATCAAGAA 509
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCATATCAAGAA 361
Query 510 GAAGTTGAGGAAAATGGGGATTGATCCTCTTACACATAAACCACTCTCTATCGTCGAAAA 569
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 362 GAAGTTAAGGAAAATGGGGATTGATCCTCTCACTCATAAACCACTCTCTATCGTCGAACA 421
Query 570 AGAAGACGAAGAACCCTTAAAGAAGCTACAGAATAATACAGTT-CCTTTTCAAGAA 624
|||||| ||||||||| |||||||| | ||||| ||| || | ||| | ||||||
Sbjct 422 AGAAGATGAAGAACCCGTAAAGAAGTTGCAGAA-AATTCAAATGCCTATACAAGAA 476
Score = 501 bits (271), Expect = 5e-141
Identities = 355/393 (90%), Gaps = 16/393 (4%)
Strand=Plus/Plus
Query 648 CAACATCAAGAACATATCAAGACTTGAAGAGTCTTTAGGTGATGATCAATTCATGGAGAT 707
||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 530 CAACATCAAGAACATGTCAAGACTTGGAGAGTCTTTAGATGATGATCAATTCATGGCGAT 589
Query 708 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTTATTGAAACAGAGTCTTTAGACCTTAT 767
||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||
Sbjct 590 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTGATTGATCCAGAATCTTTAGAGCTTAT 649
Query 768 CTGCAGCAATTCAACAATGTCTTCATCCACGTCCACATCTTCGCATTCTTCTAATGATTC 827
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 650 TTGCAGCAACTCAACAATGTCTTCATCCACGTCCACCTCTTCGAATTCTTCTAATGATTC 709
Query 828 GAGTTTCTTGAAGGATTTGCAGTTCCCGGAGTTCGAGTGGTCCGACTATGGTAATAGTAA 887
|||||||||||||||||||||||| |||| |||||||||||| | || || ||||
Sbjct 710 GAGTTTCTTGAAGGATTTGCAGTTTACGGATTTCGAGTGGTCC-A--AT--TACG-GTAA 763
Query 888 TAATGATAATAATAATGGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 947
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CA--G-TAATAAT---GGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 817
Query 948 AATT-AGTGACTTTAGCAGTTTGGATTTGCTGCTTAATGATGAGAGTTCTTCCACTTTTG 1006
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 818 TATTGA-TGACTTTAGCAGTTTGGATTTGCTGCTAAATGATGAGAGTTCTTCCACTTTTG 876
Query 1007 GGTTGTTTTGAATTCATTCTTAA-GAATATGGT 1038
|||||||||||||||||| |||| | |||||||
Sbjct 877 GGTTGTTTTGAATTCATT-TTAAAGTATATGGT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5