BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66235.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475727 jgi|Araly1|475727|fgenesh2_kg.2__857__AT1G66235.1 741 0.0
Ahg949585 jgi|Araly1|949585|scaffold_801472.1 285 3e-76
> Ahg475727 jgi|Araly1|475727|fgenesh2_kg.2__857__AT1G66235.1
Length=568
Score = 741 bits (401), Expect = 0.0
Identities = 516/571 (90%), Gaps = 9/571 (2%)
Strand=Plus/Plus
Query 229 TTCAATCAAGCAAAAGAAATGCTAATGCAAGATAAACATTTCAAATCTGGTTGGAAATTT 288
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTCAATCAAGCGAAAGAAATGCTAATGCAAGATAAAAATTTCAAATCTGGTTGGAAATTT 60
Query 289 GATCATGTATGGAACATTATTAGAAACTTTGAAAAGTTTAAAGATGGTGCTACTCAAGCT 348
||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| |||
Sbjct 61 GATCATGTATGGAACATTACTAAAAACTTCGAAAAATTTAAAGATGGTGCTACTCCGGCT 120
Query 349 AAAAAAGTCTTAAATCTATGCGGATTAGAAAATCCTACCCTCGATTCTGTTTCACAAGCG 408
| |||||||| | |||||||||| || ||||||||||||| |||||||||||||||| ||
Sbjct 121 AGAAAAGTCTCATATCTATGCGGTTTCGAAAATCCTACCCCCGATTCTGTTTCACAAACG 180
Query 409 TCTTCAGGTTC-GTTTTCATTTTCTCTTAACTTAGATGATGAAGATGACATTATTGGAAG 467
||| || | || || ||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 181 TCTCCA-GATCTGTCCTCATTTTCTCTTAACTTAGATGACAAAGATGACACTATTGGCGG 239
Query 468 ATCTCCATATCAACGACCAATTAGAGTGaaa-aagtcaaaattgaaaag-aaaaa--aTG 523
|||||| | | ||||||||||| |||||||| || | |||||||||||| ||||| |||
Sbjct 240 ATCTCCTTCTGAACGACCAATTGGAGTGAAACAA-TTAAAATTGAAAAGAAAAAACGATG 298
Query 524 ATCAAATATTGGATGTTATCAAGACTTTCGAAGAAGGGAATAAACAACTCATGGAGCAAT 583
|||||| | |||||||||||| || || ||||||||||||||||||||| |||||||||
Sbjct 299 ATCAAACAAGGGATGTTATCAAAACATTGGAAGAAGGGAATAAACAACTCGTGGAGCAAT 358
Query 584 TAAAGAAGACAAGTGCACAAAGACAACAATATTTGGAGATGCAAAGTAAGAGTTTAGCAT 643
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TAAAAAAGACAAGTGCACAAAGACAACAATATTTGGAGATGCAAAGTAAGAGTTTAGCAT 418
Query 644 TGAGAGAACAAAAAGAAGAAAACAAAGTTTTATATCGAAACTTAAATTCCATAGAAGATC 703
||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 419 TGAAAGAACTAAAAGAAGAAAACAAAGTTCTATATCGAGACTTAAATTCCATAGAAGATC 478
Query 704 CAAATCTCCGTGCATATCTTCAATCTGAACAAGCAAAAATCTTAA-GAAAAAGACTTGAT 762
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 479 CAAATCTTCGTGCATATCTTCAATCTGAACAAGCAAAAATCTTAAAGAAAA-GACTTGAT 537
Query 763 CAACAAGCTGCATCGACATCTACTTCCTTTG 793
||||||||| | ||| |||||||||| ||||
Sbjct 538 CAACAAGCTTCGTCGGCATCTACTTCATTTG 568
> Ahg949585 jgi|Araly1|949585|scaffold_801472.1
Length=346
Score = 285 bits (154), Expect = 3e-76
Identities = 269/320 (84%), Gaps = 25/320 (8%)
Strand=Plus/Plus
Query 229 TTCAATCAAGCAAAAGAAATGCTAATGCAAGAT-AAACATTTCAAATCTGGTTGGAAATT 287
||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 29 TTCAATCAAGCGAAAGAAATGCTAATGCAAGATCAAA-ATTTCAAATCTGGTTGGAAATT 87
Query 288 TGATCATGTATGGAACATTATTAGAAACTTTGAAAAGTTTAAAGATGGTGCTACTCA-AG 346
||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 88 TGATCATGTGTGGAACATTATTAAAAACTTTGAAAAGTTTAAAGATGGTGCCACTCCGA- 146
Query 347 CTAAAAAAGTCTTAAATCTATGCGGATTAG-A-A-A-ATC--C----T---A----CC-- 387
||| |||||| | |||||||||||| || | | | | ||| | | | ||
Sbjct 147 CTAGAAAAGTATCAAATCTATGCGGTTTCGGATATACATCTTCAGAGTCGGAAAATCCTA 206
Query 388 CTC--GATTCTGTTTCACAAGCGTCTTCAGGTTCGTTTTCATTTTCTCTTAACTTAGATG 445
||| ||||||||| || |||||||| |||||| || ||| ||||||||||| |||||||
Sbjct 207 CTCCCGATTCTGTTACATAAGCGTCTCCAGGTTTGTCTTCGTTTTCTCTTAATTTAGATG 266
Query 446 ATGAAGATGACATTATTGGAAGATCTCCATATCAACGACCAATTAGAGTGaaaaagtcaa 505
| ||||||||||||||||| ||||||||| ||||||||||| | |||||||||| | ||
Sbjct 267 ACGAAGATGACATTATTGGCGGATCTCCATCTCAACGACCAAGTGGAGTGAAAAAATAAA 326
Query 506 aattgaaaagaaaaaaTGAT 525
|||||||||||||||| |||
Sbjct 327 AATTGAAAAGAAAAAACGAT 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5