BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66245.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475729 jgi|Araly1|475729|fgenesh2_kg.2__859__AT1G66245.1 664 0.0
> Ahg475729 jgi|Araly1|475729|fgenesh2_kg.2__859__AT1G66245.1
Length=837
Score = 664 bits (359), Expect = 0.0
Identities = 439/477 (92%), Gaps = 7/477 (1%)
Strand=Plus/Plus
Query 393 TGAAGATTTGATTAGGGGTCGTGATCGTATGGAAGGTTCCAATAGGAATGGTGCTCGTAA 452
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 363 TGAAGATTTGATTAGGGGTCGTGATCGTATGGAAGGTTCCATTAGGAACGGTACTCGTAA 422
Query 453 TCGTGTGGACCAGCTTGAAGGTTTTAGCAAAAACGGTGAGAAACATCAGCATGAAG--AA 510
||||||||||||||| ||||||| ||||||||| ||| | | | ||| ||||| ||
Sbjct 423 TCGTGTGGACCAGCTCGAAGGTTCTAGCAAAAAGGGTCATATTTGTGAGCGTGAAGACAA 482
Query 511 -AATACTGTTAAAACAAGCGATCAAATAGATCAATCAGAAAAATCAACTAAAAGTCCATC 569
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 483 TAATACTATTAAAACAAGCGATCAAATAGATCAATCAGAAAGATCAACTAAAAGTCCTTC 542
Query 570 TGATTTTGCTTCaaaaaaaGATTATCTTGATTGGATTGAATATGTGGAAGGATCGAATCA 629
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 543 TGATTTTGCTTCAAAAAAAGATTATCTTGATTGGATTGAATACGTGGAAGGATCGAATCA 602
Query 630 TCATTGTTTCGATCGATCCGAAGATTCCGAAAAATCTTATATAAGAGAGGATATCGATCA 689
|||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 603 TCATTGTTTCGATCGATCGGAAGATTCCGGAAAACCTTATATAAGAGAGGATATCGATCA 662
Query 690 TGACGC-GATAAGCGTTGGGATATCAGAAGGATCCATAGAGGGGAACAACGATGAGAGTC 748
|||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 663 TGAC-CAGATAAGCGTTGGAATATCAGAAGGATCCATAGAGGGGAACAATGATGAGAG-C 720
Query 749 T-ATTACTCAAGAGTTCTAAGTATAGAAAAAACGAGAAATTTGAAGATTCAAAAGGTTAT 807
| |||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 721 TTATTACTGAAGAGCTCTAAGTATAGAAAAAATGAGAAATTTGAAGATTCGAAAGGTTAT 780
Query 808 AAGAAAGGAAAAGGTAGCAAGGCTAAAGATTCACTGAAATGTCAATTAGTTGACTAA 864
||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||
Sbjct 781 AAGAAAGGAAAAGGTAGCAAGGCGAAAGATACATTGAAATGTCAAATAGTTGACTAA 837
Score = 547 bits (296), Expect = 4e-155
Identities = 338/357 (95%), Gaps = 8/357 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAGATTACAAAAAAGCTATCAATGAAATACGTGAAGCTCCATAAGCaaaaaaaG 60
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGAAAATTACCAAAAAGCTATCGATGAAATACGTGAAGCTCCACAAGCAAAAAAAG 60
Query 61 CTCCGCCAAGACGGGTCCATGAAGTCAGAGGAAGACGGTGGAGAGCCTTTCCGGGAATCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCGCCAAGACGGGTCCATGAAGTCAGAGGAAGACGGTGGAGAGCCTTTCCGGGAATCT 120
Query 121 CATTCGCCGGATTATGCGGAAAGTAATGAAACAAAGGAGACTCCTAAGGTTACAAAGATT 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATTCGCCGGATAATGCGGAAAGTAATGAAACAAAGGAGACTCCTAAGGTTACAAAGATT 180
Query 181 ATGGAGTCCATGCATCGTAAGCTGATGCTAAAAGACAAGGCAAATAAAAAGAAAATTCAC 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 ATGGAGTCCATGCATCGTAAGCTAATGCTAAAAGATAAGGCAAATAAAAAGAAAATTCAC 240
Query 241 GTGGACG---A---TCAATCCCAAATGTC-AGAACGTTCGGTTAGGAATGGTGGTCGTGA 293
||||||| | ||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 241 GTGGACGGTCACGATCAATCCCAAATGTCTA-AACGTTCGGTTAGGAATGGTGGCCGTGA 299
Query 294 TCGCAAGGACCAGCTTGATGAAGGCTCGGTTAGAAACATGAATCGCGATGGTACGGA 350
||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 300 TCGCAAGGACCAGCTTGATGAAGACTCGGTTAGAAACACGAATCGTGATGGTACGGA 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5