BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66250.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925780 jgi|Araly1|925780|scaffold_201341.1 2132 0.0
> Ahg925780 jgi|Araly1|925780|scaffold_201341.1
Length=1552
Score = 2132 bits (1154), Expect = 0.0
Identities = 1431/1563 (92%), Gaps = 26/1563 (2%)
Strand=Plus/Plus
Query 150 aaaaaagtctctctctttccatggcttctcttctccatcttcttctcctttctctttctc 209
|||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 AAAAAAGTCTGTCTCTTTCCATGG--------CTCC-TCTTCTTCTCCTTTCTCTTTCTC 51
Query 210 ttttagttcttgcttcagcttctccttctcctccAGCTGATGAAGGTTCATATATTGGAG 269
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 52 TTTTAGCTCTTGCTTCAGCTTCTCCTTCTCCTCCAGCTGATGAAGGTTCATATATCGGAG 111
Query 270 TAAACATAGGGACTGATCTTTCTGATATGCCACATCCAACACAAGTTGTTGCTCTACTAA 329
| || |||||||| |||||||| |||||||| |||||||||||||||||| || ||||||
Sbjct 112 TTAATATAGGGACCGATCTTTCGGATATGCCTCATCCAACACAAGTTGTTTCTTTACTAA 171
Query 330 AAGCTCAAGAAATCCGACATATTCGATTATACAACGCTGATCCCGGGTTGTTGATTGCTC 389
|||||||| |||| ||||||||||| |||||| | |||||||||||| |||||||||||
Sbjct 172 AAGCTCAACAAATTCGACATATTCGTTTATACGATGCTGATCCCGGGATGTTGATTGCTT 231
Query 390 TAGCAAACACTGGTATCAAAGTTATAATCTCCATTCCTAATGACCAGCTTCTTGGTATAG 449
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 232 TAGCAAACACTGGTATCAAAGTTATAATCTCAATTCCTAATGACCAACTTCTTGGTATTG 291
Query 450 GTCAATCCAATTCAACCGCAGCGAATTGGGTTAAACGCAATGTCATTGCACATTACCCTG 509
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 292 GTCAATCCAATTCAACCGCTGCGAATTGGGTTAAACGTAATGTCATTGCGCATTACCCTG 351
Query 510 CAACGA-TGATAACCGCGGTTTCTGTTGGCTCTGAGGTGCTAACCAGTCTCTCTAATGCA 568
|||||| | ||||||||| ||||||||||||||||||| | || |||||||||||||||
Sbjct 352 CAACGACT-ATAACCGCGATTTCTGTTGGCTCTGAGGTTTTGACTAGTCTCTCTAATGCA 410
Query 569 GCACCTGTTCTAGTCAGTGCTATAAAGAACGTTCATGCTGCTTTACTCTCGGCGAATCTT 628
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 411 GCACCAGTTCTTGTCAGTGCTATAAAGAATGTTCATGCTGCTTTACTTTCGTCGAATCTT 470
Query 629 GA-CAAGTTGATAAAAGTTTCTACTCCTTTATCAACTTCCTTGATTCTTGATCCTTTTCC 687
|| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 471 GATC-GGTTGATCAAAGTTTCTACTCCTTTATCCACTTCCTTGATTCTTGACCCTTTTCC 529
Query 688 TCCATCGCAAGCGTTCTTTAACCGTTCTTTGAATGCGGTTATAGTTCCGTTACTAAGCTT 747
||| || ||||| ||||||||||| || |||||| |||||||||| ||||||||||||||
Sbjct 530 TCCGTCACAAGCCTTCTTTAACCGCTCCTTGAATTCGGTTATAGTCCCGTTACTAAGCTT 589
Query 748 CTTGCAGTCAACAAACTCATACCTGATGGTGAATGTGTATCCATACAT-TGACTATATGC 806
||||||||| |||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 590 CTTGCAGTCTACAAACTCATACCTGATGATGAATGTGTATCCTTA-TTATGACTATATGC 648
Query 807 AATCAAACGGTGTGATTCCGT-TAGACTACGCGTTGTTCAAACCGATACCTCCAAACAAA 865
|||||||||| |||||||| | ||||||||||| | ||||||||||| ||||||||||||
Sbjct 649 AATCAAACGGCGTGATTCC-TCTAGACTACGCGCTCTTCAAACCGATTCCTCCAAACAAA 707
Query 866 GAAGCTGTTGATGCAAACACTCTTGTTCGTTACTCAAACGCTTTTGATGCAATGGTTGAT 925
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 708 GAAGCTGTTGATGCCAACACACTTGTTCGTTACTCAAACGCCTTTGATGCAATGGTTGAT 767
Query 926 GCAACGTACTTCGCTATGGCGTT-CCTCAACTTCACAAACATTCCGGTTTTAGTAACCGA 984
||||| || ||||| ||||| || | |||||||| |||||||||||||| ||||||||
Sbjct 768 GCAACATATTTCGCAATGGC-TTATTTGAACTTCACGAACATTCCGGTTTTGGTAACCGA 826
Query 985 ATCAGGCTGGCCTTCGAAAGGAGAAACCAATGAGCCTGATGCTACACTTGACAACGCCAA 1044
||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 827 ATCAGGCTGGCCTTCGAAAGGCGAAACCAACGAGCCTGATGCTACACTCGATAACGCCAA 886
Query 1045 CACTTACAACAGTAATCTCATTAGACATGTTCTTAACAAGACCGGAACTCCGAAACGCCC 1104
|||||| ||||| || ||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 887 CACTTATAACAGCAACCTCATCAGACATGTTCTCAACAAGACGGGAACACCTAAGCGCCC 946
Query 1105 GGGGATCGCTGTGAGTACTTATATTTACGAGCTTTACAATGAAGATACAAAAGCAGG--- 1161
||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 947 GGGAATCGCTGTAAGTACTTACATTTACGAGCTCTACAACGAAGATACAAAAGCAGGATC 1006
Query 1162 TTTATCAGAGAAGAATTGGGGGTTGTTTAATGCAAATGGTGAACCGGTTTACGTACTTCG 1221
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1007 TTTATCAGAGAAGAATTGGGGTTTGTTTAATGCAAATGGTGATCCGGTTTACGTACTTCG 1066
Query 1222 GTTGACTAACTCGGGCTCGGTTCTAGCTAACGATACAACGAACCAGACTTATTGTACTGC 1281
|||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1067 TTTGACTAACTCGGGTTCGGTTCTAGCTAACGATACCACGAACCAAACTTACTGTACTGC 1126
Query 1282 AAGAGAAGGTGCTGATACAAAGATGCTTCAAGCTGCTCTTGATTGGGCTTGTGGTCCTGG 1341
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1127 AAGAGAAGGTGCTGATCCAAAGATGCTTCAAGCTGCTCTTGATTGGGCTTGTGGCCCCGG 1186
Query 1342 AAAGATTGATTGTTCGCCTATTAAGCAAGGAGAGACTTGTTATGAACCGGATAATGTCG- 1400
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1187 GAAGATCGATTGCTCGCCTATTAAGCAAGGAGAGACTTGTTATGAACCGGATAATGT-GA 1245
Query 1401 TCGCGCATGCTAACTACGCGTTTGATACTTATTATCATCAGACTGGGAATAATCCTGATG 1460
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTGCGCATGCTAACTACGCGTTTGATACTTATTATCATCAGACTGGGAATAATCCTGATG 1305
Query 1461 CTTGCAACTTCAATGGTGTTGCTAGTATCACTACCACAGATCCAAGTCATGGTACATGTG 1520
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1306 CTTGCAACTTCAATGGAGTTGCTAGTATCACCACCACAGATCCAAGTCATGGTACATGTG 1365
Query 1521 TGTTTGCTGGGAGCCGCGGTAATGGTAGAAACGGGACGTCTGTGAACATAACAGCGCCAT 1580
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TGTTTGCTGGAAGTCGCGGTAATGGTAGAAACGGGACGTCTGTGAACATAACAGCGCCAT 1425
Query 1581 CGGCAAACTCAACAACTTCTTCTGGAATACGGAGTGATTTGTATTACAGTCGGGGTATAT 1640
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 CGGCAAACTCAACAACCTCGTCTGGAATACGGAGTGATTTGTATTACAGTCGGGGTATAT 1485
Query 1641 GGAGTAT-CTTGACAGTAATGATTTTGAACGTTGCTAATATCTTGTGAGAAATCTTTGGG 1699
|||| || || |||||||||||||||||| ||||||||| |||||||| |||||||| ||
Sbjct 1486 GGAGCATTCT-GACAGTAATGATTTTGAATGTTGCTAATCTCTTGTGAAAAATCTTTCGG 1544
Query 1700 ACA 1702
|||
Sbjct 1545 ACA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5