BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66280.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1 2639 0.0
Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1 1491 0.0
> Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1
Length=1756
Score = 2639 bits (1429), Expect = 0.0
Identities = 1652/1761 (94%), Gaps = 10/1761 (1%)
Strand=Plus/Plus
Query 49 ATGGCATTGCAAAAGTTCCCTCTCCTGGGGCTTCTTTTTCTCATAACCATTGTCGTCTCT 108
||||||||||||||||| |||||| ||||||| ||||| ||| ||||||| |||||||||
Sbjct 1 ATGGCATTGCAAAAGTTTCCTCTCATGGGGCTGCTTTTGCTCCTAACCATCGTCGTCTCT 60
Query 109 TCGACAATAGCCGTCGATGATCCTGTGTGCCCAACGACGTCCAAACTAAGCCGAGCAAGT 168
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 61 TCGACAATAGCCGTCGATGATCCTGTTTGCCCGACTACGTCCAAACTAAGCCGAGCAAGT 120
Query 169 TTCCCTAATGGGTTTGTGTTTGGCACAGCTACTGCTGCGTTTCAGGTTGAAGGTGCAATT 228
|||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TTCCCTAACGGTTTTTTGTTTGGCACGGCTACTGCTGCGTTTCAGGTTGAAGGTGCAATT 180
Query 229 AATGAAACTTGTCGTGGACCTGCTCTATGGGATATCTTCTGTAAGAGAAATCCAGAGAGA 288
||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 181 AATGAAACTTGCCGTGGACCGGCTCTATGGGATATCTTTTGTAGGAGAAATCCAGAGAGA 240
Query 289 TGTAGTGGCCACAACGCCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTAGTGGCCACAACGCCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATT 300
Query 349 CAACTAATGAAGAATCTAAACACAGACGCATTCAGACTCTCAATCGCATGGTCAAGAATA 408
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CAACTAATGAAGAATCTAAACACAGACGCATTCAGACTCTCAATCTCATGGTCAAGAATA 360
Query 409 TTTCCTCATGGGAGAAAGGAGAAGGGAGTGAGTCAAGCTGGTGTGAAATTCTACCACGAC 468
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TTTCCTCATGGAAGAAAGGAGAAGGGAGTGAGTCAATCTGGTGTGAAATTCTACCACGAT 420
Query 469 CTGATCGATGAGCTCCTTAAAAATGGTATAATTCCGTTT-GTGACTGTTTTCCATTGGGA 527
| |||||||||||||| |||||||| ||| |||| || ||||||||||| ||||||||
Sbjct 421 GTCATCGATGAGCTCCTAAAAAATGGCATACTTCC-TTCCGTGACTGTTTTTCATTGGGA 479
Query 528 CACTCCACAAGATTTAGAAGACGAATATGGCGGTTTCTTAAGCGAGAACATTGTGAAAGA 587
||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 480 CACTCCACAAGATTTAGAAGACGAATATGGCGGTTTCTTAAGCCAAAACATTGTAAAAGA 539
Query 588 TTTCCGAGAATATGCAGATTATGTTTTCACTGAATACGGTGGAAAAGTGAAAAACTGGAT 647
|||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTTCCGGGAATATGCAGATTTTGTTTTCACAGAATACGGTGGAAAAGTGAAAAACTGGAT 599
Query 648 CACTTTCAACGAGCCATGGGTCTTCGCTCATGCAGGTTACGACGTAGGCAAGAAGGCGCC 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CACTTTCAACGAGCCATGGGTCTTCGCTCATGCAGGTTACGACGTAGGCAAGAAGGCACC 659
Query 708 AGGACGTTGTTCTCGCTACCTTAAAGGTTGTGAAGACCGAGATGGACGATCAGGTTATGA 767
||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 660 AGGACGTTGTTCTCGTTACGTTAAAGGTTGCGAAGACCGAGATGGACGATCCGGTTATGA 719
Query 768 GGCTTATCTAGTTAGTCACAACCTCCTCAACGCTCATGCAGAAGCTGTTGAAGTTTTCCG 827
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 GGCTTATCTAGTCAGTCACAACCTCCTCAACGCTCACGCAGAAGCTGTTGAAGTTTTCCG 779
Query 828 CCAAAAGGTTAAAGGTGGGAAAAT-TGGAATCGCACATAGTCCGGCTTGGTTCGAACCAC 886
|||||||||||||||| ||||| | || ||| ||||||||||||||||||||||||||||
Sbjct 780 CCAAAAGGTTAAAGGTTGGAAATTCTG-AATGGCACATAGTCCGGCTTGGTTCGAACCAC 838
Query 887 ATGATCTTAAAGATTCAAATGACGTTCCAACTGTTAGCCGTGTACTTGACTTTATGTTGG 946
|||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 839 ATGACCTTAAAGATTCAAATGACACTCCAACTGTCGGCCGTGTACTTGACTTTATGTTGG 898
Query 947 GATGGCATCTAGACCCAACTACTTTTGGAGATTATCCACAAATCATGAAAGACCTTCTTG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATGGCATCTAGACCCAACTACTTTTGGAGATTATCCACAAATCATGAAAGACCTTCTTG 958
Query 1007 GTCACAGATTGCCCAAATTCACTTCTTCACAAAAAGCAAAATTGAAAGATTCGACCGATT 1066
| ||||||||||| ||||| || | | |||||||||||||||||||||||||||||||
Sbjct 959 GCCACAGATTGCCTAAATTTACGAATGCGCAAAAAGCAAAATTGAAAGATTCGACCGATT 1018
Query 1067 TCGTAGGGCTTAACTACTATACTTCAACATTTTCAAACCATAATGAAAAGCCAGATCCGT 1126
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 TCGTAGGACTTAACTACTATACTTCAACATTTTCAAACCATAATGAGAAGCCAGATCCGT 1078
Query 1127 CTACACCAAGTTGGAAGCAAGATTCTCTTGTTGCTTGGGAACCTAAGAATGTAGATCACA 1186
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1079 CTACACCAAGTTGGAAGCAAGATTCTCTTGTTGCCTGGGAACCTAAGAATGTCGACCACA 1138
Query 1187 GCGCCATTGGTAGCCAGCCTCTTACCGCTGCATTGCCCGTCTACGCTAAAGGTTTTAGAA 1246
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1139 GCGCCATTGGTAGTCAGCCTCTTACTGCTGCGTTGCCCGTCTACGCTAAAGGTTTTAGAA 1198
Query 1247 GTCTTTTAAAGTACATCAAAGATAAATACGCAAACCCGGAAATTATGATCATGGAAAATG 1306
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1199 GTCTTTTAAAGTACATCAAGGATAAATACGCAAACCCCGAAATTATGATCATGGAAAATG 1258
Query 1307 GATATGGAGATAAACTTAAGG-ACAAAGATTCGGTTGAGGTTGGTACTGCTGATTATAAC 1365
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1259 GATATGGAGATAAACT-AAGGGACAAAGATTCGGTTGAGGTTGGTACTGCTGATCATAAC 1317
Query 1366 AGGAAATACTATCTTCAGAGGCATCTTCTAGCTATGAACGAAGCTATTTGCATTGACAAA 1425
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1318 AGGAAATATTATCTTCAGAGGCATCTTCTGGCTATGAACGAGGCTATTTGCATCGACAAG 1377
Query 1426 GTGAGAGTTACGGGATACTTTGTATGGTCATTATTAGATAACTTTGAATGGCAAGATGGT 1485
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1378 GTGAGAGTTACGGGATACTTTGTATGGTCATTGTTGGATAACTTTGAATGGCAAGATGGT 1437
Query 1486 TATAATAACAGATTCGGACTCTATTACGTCGATTTCAAAAATAACCTCACACGTTATGAG 1545
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TATAATAATAGATTCGGACTCTATTACGTCGATTTCAAAAATAACCTCACACGTTATGAG 1497
Query 1546 AAAGAATCAGCCAAGTACTACAAAGATTTCCTCGGTCAAGGTGTTCGTCCATCCGCGCTC 1605
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1498 AAAGAATCAGCCAAGTATTACAAAGATTTCCTAGCTCAAGGTGTTCGTCCATCCGCGATC 1557
Query 1606 AAGAAGGATGAGCTTTAAGTTATATTTTGAGGATTTGGTTTTCTGTTCAATGCTT-CTTT 1664
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1558 AAGAGGGATGAGCTTTAAGTTATATTTTGAGGATTTGGTTTTCTGTTCAATG-TTGCTTT 1616
Query 1665 CCTATGTTTTAGTTTGTGATTGATCATGAT-TCATGAAGTCTTGGTTAATAATAATAAAA 1723
|| || ||||||||||||||||| || ||| | |||| | |||||| | ||||||||||
Sbjct 1617 CCGATCTTTTAGTTTGTGATTGACCAGGATAT-ATGAGGCCTTGGTCGACAATAATAAAA 1675
Query 1724 GTGTTTTGTATTCCTTCAGTTTCTAGCTTATTTGACATGATCAAGAATGCTTTAGTATAA 1783
|||| |||| || ||||||| |||||||||||||||| ||||||||| |||| ||| |||
Sbjct 1676 GTGTGTTGTTTTTCTTCAGTCTCTAGCTTATTTGACAAGATCAAGAAGGCTTCAGTGTAA 1735
Query 1784 ATATATTATCCTTATATGAAG 1804
||||||||||||||| |||||
Sbjct 1736 ATATATTATCCTTATGTGAAG 1756
> Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1
Length=1941
Score = 1491 bits (807), Expect = 0.0
Identities = 1430/1719 (83%), Gaps = 89/1719 (5%)
Strand=Plus/Plus
Query 49 ATGGCATTGCAAAAG-TTCCCTCTCCTGGGGCTTCTTTTTCTCATAACCATTGTCGTCTC 107
||||| ||||||||| || |||||| | ||||| ||||| ||| ||||||| |||| |||
Sbjct 220 ATGGCTTTGCAAAAGCTT-CCTCTCATTGGGCTGCTTTTGCTCCTAACCATCGTCGCCTC 278
Query 108 TTCGA-C-AATAGCCGTCGAT-GATCCTGTGTGCCCAACGACGTCCAAACTAAGCCGAGC 164
|| | | ||| | | ||| || ||||| ||||| | || ||||||||||||| ||
Sbjct 279 -TCCAGCAAAT-G-C--AGATGGA-CCTGTATGCCCGCCTTCGACCAAACTAAGCCGGGC 332
Query 165 AAGTTTCCCT-AATGGGTTTGTGTTTGGCACAGCTACTGCTGCGTTTCAGGTTGAAGGTG 223
|||||||||| || || ||| | |||||||| |||||||| || | ||||| |||||||
Sbjct 333 AAGTTTCCCTGAA-GGTTTTTTATTTGGCACCGCTACTGCGGCATACCAGGTCGAAGGTG 391
Query 224 CAATTAATGAAACTTGTCGTGGACCTGCTCTATGGGATATCTTCTGTAAGAGAAATCCAG 283
||||||||||||||||||||||||| ||| ||||||| |||| ||||| |||| |||| |
Sbjct 392 CAATTAATGAAACTTGTCGTGGACCAGCTTTATGGGACATCTACTGTAGGAGATATCCTG 451
Query 284 AGAGATGTAGTGGCCACAACGCCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAG 343
||||||| | | | | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAGATGCAATAACGATAACGGTGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAG 511
Query 344 ATATTCAACTAATGAAGAATCTAAACACAGACGCATTCAGACTCTCAATCGCATGGTCAA 403
||||||||||||||||||| |||||||||||||| |||||| | || ||||||||| |||
Sbjct 512 ATATTCAACTAATGAAGAACCTAAACACAGACGCTTTCAGAATGTCTATCGCATGGCCAA 571
Query 404 GAATATTTCCTCATGGGAGAAAGGAGAAGGGAGTGAGTCAAGCTGGTGTGAAATTCTACC 463
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct 572 GAATATTTCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTTTACC 631
Query 464 ACGACCTGATCGATGAGCTCCTTAA-AAATGGTATAATTCCGTTTGTGACTGTTTTCCAT 522
| ||||| ||||| |||||| | || ||||||||||| ||| || || |||||||| ||
Sbjct 632 ATGACCTCATCGACGAGCTCAT-AAGAAATGGTATAACTCCATTCGTTACTGTTTTTCAC 690
Query 523 TGGGACACTCCACAAGATTTAGAAGACGAATATGGCGG-TTTCTTAAGCGAGAACATTGT 581
|||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||
Sbjct 691 TGGGACACTCCACAAGATTTAGAAGACGAATATGGCGGATTT-TTAAGCGATAGGATTGT 749
Query 582 GAAAGATTTCCGAGAATATGCAGA-TTATGTTTTC-ACTGAATACGGTGGAAAAGTGAAA 639
||| ||||||||||| |||||||| || ||||||| | |||||||||||||||||||||
Sbjct 750 GAAGGATTTCCGAGAGTATGCAGACTT-TGTTTTCCAA-GAATACGGTGGAAAAGTGAAA 807
Query 640 AACTGGATCACTTTCAACGAGCCATGGGTCTTCGCTCATGCAGGTTACGACGTAGGCAAG 699
| |||||||||||||| ||||||||||| ||| | || || ||||| |||||||||||
Sbjct 808 CATTGGATCACTTTCAATGAGCCATGGGTTTTCTCGCACGCTGGTTATGACGTAGGCAAA 867
Query 700 AAGGCGCCAGGACGTTGTTCTCGCT-ACCTTAAAGGTTGTGAA-GACCGAGATGGACGAT 757
||||| || |||||||| ||| || || | || | | || | || ||| |||||||
Sbjct 868 AAGGCACCTGGACGTTGCTCTT-CTTACGTCAATGCTA---AATG-CCAAGACGGACGAT 922
Query 758 CAGGTTATGAGGCTTATCTAGTTAGTCACAACCTCCT-CAACGCTCATGCAGAAGCTGTT 816
|||| || ||||||||||| || | |||||| ||||| | | |||| |||||||| |||
Sbjct 923 CAGGATACGAGGCTTATCTCGTCACTCACAATCTCCTTCT-CTCTCACGCAGAAGCCGTT 981
Query 817 GAAGTTTTCCGC-----C-AAAAG-GTTAAAGGTGGGAAAATTGGAATCGCACATAGTCC 869
|||| || | | | ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 982 GAAGCTTACAGAAAATGCGAAAAGTGT-AAAGGTGGGAAGATTGGAATCGCACATAGTCC 1040
Query 870 GGCTTGGTTCGAACCACATGATCTTAAAGATTCA-AATGACG-T---TCCAACTGTTAGC 924
||||||||||||| ||||||| ||| |||||| || |||| | |||| | | | |
Sbjct 1041 GGCTTGGTTCGAAGCACATGACCTTGCTGATTCACAA-GACGGTGCGTCCATC-G--A-C 1095
Query 925 CGTGTACTTGACTTTATGTTGGGATGGCATCTAGACCCAACTACTTTTGGAGATTATCCA 984
|||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||
Sbjct 1096 CGTGCACTTGACTTTATTTTGGGATGGCATCTAGACACAACGACGTTTGGAGATTATCCA 1155
Query 985 CAAATCATGAAAGACCTTCTTGGTCACAGATTGCCCAAATTCACTTCTTCA-CAAAAAGC 1043
|| |||||||||||| || |||| || |||||||||||||| || || | || |||||
Sbjct 1156 CAGATCATGAAAGACATTGTTGGACATAGATTGCCCAAATTTACAACTG-AGCAGAAAGC 1214
Query 1044 AAAATTGAAAGATTCGACCGATTTCGTAGGGCTTAACTACTATACTTCAACATTTTCAAA 1103
||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1215 AAAATTGAAAGATTCTACCGATTTCGTTGGGCTCAACTACTATACTTCGGTGTTTTCAAA 1274
Query 1104 CCATAATG-A-AAAGCCAGATCCGTCTACACCAAGTTGGAAGCAAGATTCTCTTGTTGCT 1161
|||| || | ||| || ||||| || | |||||| |||| ||||||||||||| || |
Sbjct 1275 CCATT-TGGAGAAA-CCTGATCCTTCAAAACCAAGATGGATGCAAGATTCTCTTATTACA 1332
Query 1162 TGGGAACCTAAGAAT--GTAGA-TCACAGCGCCATTGGTAGCCAGCCTCTT-ACCGCTGC 1217
||||| |||||||| | | | | || | | ||||||||| ||||| || ||||||||
Sbjct 1333 TGGGAGTCTAAGAATCCGCAAAATTACT-C-C-ATTGGTAGCAAGCCT-TTGACCGCTGC 1388
Query 1218 ATTGCCCGTCTACGCTAAAGGTTTTAGAAGTCTTTTAAAGTACATCAAAGATAAATACGC 1277
|||| ||| ||| | | ||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1389 ATTGAACGTTTACTCGAGAGGGTTTAGAAGTCTTTTGAAGTACATCAAGGATAAATACGC 1448
Query 1278 AAA-CCCGGAAATTATGATCATGGAAAATGGATATGGAGATA-AACTTAAGGACAAAGAT 1335
||| |||| ||||||||||||||||||| ||||| ||||| | ||||| || | ||||
Sbjct 1449 AAATCCCG-AAATTATGATCATGGAAAACGGATACGGAGA-AGAACTTGGGGCCTCAGAT 1506
Query 1336 TCGGTTGAGGTTGGTACTGCTGATTATAACAGGAAATACTATCTTCAGAGGCATCTTCT- 1394
||| | | |||||||| |||||||| ||||| ||||| |||||||||||||||||| |
Sbjct 1507 TCGATCGCTGTTGGTACCGCTGATTACAACAGAAAATATTATCTTCAGAGGCATCTTTTG 1566
Query 1395 AGCTATG-AACGAAGCTATTTGCATTGACAAAGTGAGA-GTTACGGGATACTTTGTATGG 1452
|| |||| || |||||| ||||||| |||||||||| | ||||| |||||||||||||||
Sbjct 1567 AG-TATGCAA-GAAGCTGTTTGCATCGACAAAGTGA-ATGTTACAGGATACTTTGTATGG 1623
Query 1453 TCATTATTAGATAACTTTGAATGGCAAGATGGTTATAATAACAGATTCGGACTCTATTAC 1512
||||| || |||||||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1624 TCATTGTTGGATAACTTCGAGTGGCAAGATGGTTATAAAAACAGATTCGGACTCTACTAC 1683
Query 1513 GTCGATTTCAAAAATAACCTCACACGTTATGAGAAAGAATCAGCCAAGTACTACAAAGAT 1572
| |||||||||||||||||||||||||| ||||||||||| | |||||| ||||| ||
Sbjct 1684 ATTGATTTCAAAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACAAGGAG 1743
Query 1573 TTCCTCGGTCAAGGTGTTCGTCCATCCGCGCTCAAGAAGGATGAGCTTTAAGTTATATTT 1632
|||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||
Sbjct 1744 TTCCTCAGTCAAGGTGTTCGTCCATCAGCGATCAAGAAGGATGAGCTTTAAGCTATATTT 1803
Query 1633 TGAGGATTTGGTTTTCTGTT-CAATG---CTTC--TTTCCTATGTTTTAGTTTGTGATTG 1686
| | ||| | ||||| ||||| ||| ||||||||||||| ||||||||||
Sbjct 1804 -G-G--TTT--T---CTGTTTCAATGTGTCTTTAATTTCCTATGTTTTTCTTTGTGATTG 1854
Query 1687 ATCATGATTCATGAAGTCTTGGTTAATAATAATAAAAGT 1725
| || ||||||||| |||||||||| |||||| || |||
Sbjct 1855 ACCAAGATTCATGAGGTCTTGGTTA-TAATAA-AAGAGT 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5