BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66340.1
Length=2774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475737 jgi|Araly1|475737|fgenesh2_kg.2__867__AT1G66340.1 3661 0.0
> Ahg475737 jgi|Araly1|475737|fgenesh2_kg.2__867__AT1G66340.1
Length=2386
Score = 3661 bits (1982), Expect = 0.0
Identities = 2259/2394 (94%), Gaps = 14/2394 (1%)
Strand=Plus/Plus
Query 1 GTTAAACCCAACCAATTTTGA-CTTGaaaaaaaGCTTCAACGCTCCCCTTTTCTCCTTCT 59
|||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||
Sbjct 1 GTTAAACCCAACCATTTTTGATTTTGAAAAAAAGCTTCAACGCT--CCTTTT-T-CTCCT 56
Query 60 CCGTCGCTCTCCGCCGCGTCCCAAATCCCCAATTCCT-CCTCTTCTCCGATCAATTCTTC 118
||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||
Sbjct 57 CCGTCGCTCTCCGCCGCGTCCAAAATCCCCAAATCCTCCCTCTTATCCGATCAATTCTTC 116
Query 119 CCAAGTGTGTGTATGTGTGAGA-GAG-GAACTAT-AGTGTAAAAAATTCATAATGGAAGT 175
|||||| | ||| ||| | | | | | | | | |||| ||||||||||||||||
Sbjct 117 CCAAGT-T-TGTTTGTTTAACAGGTGTG-TGTGTGTGTGTGTGTAATTCATAATGGAAGT 173
Query 176 CTGCAATTGTATTGAACCGCAATGGCCAGCGGATGAATTGTTAATGAAATACCAATACAT 235
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 174 CTGCAATTGTATTGAACCGCAATGGCCAGCGGATGAATTGTTAATGAAGTATCAATACAT 233
Query 236 CTCCGATTTCTTCATTGCGATTGCGTATTTTTCGATTCCTCTTGAGTTGATTTACTTTGT 295
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 234 ATCGGATTTCTTCATTGCGATTGCGTATTTTTCTATTCCTCTTGAGTTGATATACTTTGT 293
Query 296 GAAGAAATCAGCCGTGTTTCCGTATAGATGGGTACTTGTTCAGTTTGGTGCTTTTATCGT 355
||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 294 GAAGAAATCTGCGGTGTTTCCTTATAGATGGGTGCTTGTTCAGTTTGGTGCTTTTATTGT 353
Query 356 TCTTTGTGGAGCAACTCATCTTATTAACTTATGGACTTTCACTACGCATTCGAGAACCGT 415
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCTTTGTGGGGCGACTCATCTTATTAACTTATGGACTTTCACTACGCATTCGAGAACCGT 413
Query 416 GGCGCTTGTGATGACTACCGCGAAGGTGTTAACCGCTGTTGTCTCGTGTGCTACTGCGTT 475
|||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 414 TGCGCTTGTTATGACTACTGCGAAAGTGTTAACTGCTGTTGTCTCGTGTGCTACTGCGTT 473
Query 476 GATGCTTGTTCATATTATTCCTGATCTT-TTGAGTGTTAAGACTCGGGAGCTTTTCTTGA 534
||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||
Sbjct 474 GATGCTTGTTCATATTATTCCTGAT-TTGTTGAGTGTTAAGACCCGGGAACTGTTCTTGA 532
Query 535 AAAATAAAGCTGCTGAGCTCGATAGAGAAATGGGATTGATTCGAACTCAGGAAGAAACCG 594
||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 533 AAAATAAGGCTGCGGAGCTTGATAGGGAAATGGGATTGATTCGAACTCAGGAAGAAACCG 592
Query 595 GAAGGCATGTGAGAATGTTGACTCATGAGATTAGAAGCACTTTAGATAGACATACTATTT 654
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 593 GACGGCATGTTAGAATGTTGACACATGAGATTAGAAGCACTTTAGATAGACATACTATTT 652
Query 655 TAAAGACTACACTTGTTGAGCTTGGTAGGACATTAGCTTTGGAGGAGTGTGCATTGTGGA 714
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 TAAAGACTACACTTGTTGAGCTTGGTAGGACATTAGCTTTGGAAGAGTGTGCATTGTGGA 712
Query 715 TGCCTACTAGAACTGGGTTAGAGCTACAGCTTTCTTATACACTTCGTCATCAACATCCCG 774
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 713 TGCCTACTAGGACTGGGTTAGAGCTACAGCTCTCTTATACACTTCGTCACCAACATCCCG 772
Query 775 TGGAGTATACGGTTCCTATTCAATTACCGGTGATTAACCAAGTGTTTGGTACTAGTAGGG 834
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 773 TGGAGTATACGGTTCCCATTCAATTACCGGTGATTAACCAAGTATTTGGTACTAGTAGGG 832
Query 835 CTGTAAAAATATCTCCTAATTCTCCTGTGGCTAGGTTGAGACCTGTTTCTGGGAAATATA 894
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 CTGTAAAAATATCTCCTAATTCCCCTGTGGCTAGGTTGAGACCTGTTTCTGGGAAATATA 892
Query 895 TGCTAGGGGAGGTGGTCGCTGTGAGGGTTCCGCTTCTCCACCTTTCTAATTTTCAGATTA 954
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGCTTGGGGAGGTGGTCGCTGTGAGGGTTCCGCTTCTCCACCTTTCTAATTTTCAGATTA 952
Query 955 ATGACTGGCCTGAGCTTTCAACAAAGAGATATGCTTTGATGGTTTTGATGCTTCCTTCAG 1014
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 953 ATGACTGGCCTGAGCTTTCAACGAAGAGATATGCTCTGATGGTCTTGATGCTTCCTTCAG 1012
Query 1015 ATAGTGCAAGGCAATGGCATGTCCATGAGTTGGAACTCGTTGAAGTCGTCGCTGATCAGG 1074
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1013 ATAGTGCGAGGCAATGGCATGTCCATGAGTTGGAACTCGTTGAAGTCGTTGCTGATCAGG 1072
Query 1075 TGGCTGTAGCTCTCTCACATGCTGCGATCCTAGAAGAGTCGATGCGAGCTAGGGACCTTC 1134
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 TGGCTGTGGCTCTCTCACATGCTGCGATCCTAGAAGAGTCTATGCGAGCTAGGGACCTTC 1132
Query 1135 TCATGGAGCAGAATGTTGCTCTTGATCTAGCTAGACGAGAAGCAGAAACAGCAATCCGTG 1194
|||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1133 TCATGGAGCAGAATGTCGCTCTGGATCTAGCAAGACGAGAAGCAGAGACAGCAATCCGTG 1192
Query 1195 CCCGCAATGATTTCCTAGCGGTTATGAACCATGAAATGCGAACACCGATGCATGCGATTA 1254
|||||||||||||||| || |||||||||||||| ||||| || ||||||||||| || |
Sbjct 1193 CCCGCAATGATTTCCTGGCAGTTATGAACCATGAGATGCGTACTCCGATGCATGCAATCA 1252
Query 1255 TTGCACTCTCTTCCTTACTCCAAGAAACGGAACTAACCCCTGAACAAAGACTGATGGTGG 1314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1253 TTGCACTCTCTTCCTTACTCCAAGAAACGGAACTAACCCCTGAACAAAGGCTGATGGTGG 1312
Query 1315 AAACAATACTTAAAAGTAGTAACCTTTTGGCAACTTTGATGAATGATGTCTTAGATCTTT 1374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AAACAATACTTAAAAGTAGCAACCTTTTGGCAACTTTGATGAATGATGTCTTAGATCTTT 1372
Query 1375 CAAGGTTAGAAGATGGAAGTCTTCAACTTGAACTTGGGACATTCAATCTTCATACATTAT 1434
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1373 CAAGGTTAGAGGATGGAAGTCTTCAACTTGAACTTGGAACGTTCAACCTTCATACATTAT 1432
Query 1435 TTAGAGAGGTCCTCAATCTGATAAAGCCTATAGCGGTTGTTAAGAAATTACCCATCACAC 1494
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTAGAGAGGTCCTGAATCTGATAAAGCCTATAGCGGTTGTTAAGAAATTACCCATCACAC 1492
Query 1495 TAAATCTTGCACCAGATTTGCCAGAATTTGTTGTTGGGGATGAGAAACGGCTAATGCAGA 1554
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1493 TAAATCTTGCACCAGATTTGCCAGAATTTGTCGTTGGGGATGAGAAACGACTAATGCAGA 1552
Query 1555 TAATATTAAATATAGTTGGTAATGCTGTGAAATTCTCCAAACAAGGTAGTATCTCCGTAA 1614
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TAATTTTGAATATAGTTGGTAATGCTGTGAAATTCTCCAAACAAGGTAGTATCTCCGTAA 1612
Query 1615 CCGCTCTTGTCACCAAGTCAGACACACGAGCTGCTGACTTTTTTGTCGTGCCAACTGGGA 1674
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1613 CCGCTCTTGTCACCAAGTCAGACACTCGAGATGCTGACTTTTTTGTCGTGCCAACTGGGA 1672
Query 1675 GTCATTTCTACTTGAGAGTGAAGGTAAAAGACTCTGGAGCAGGAATAAATCCTCAAGACA 1734
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GTCATTTCTACTTGAGAGTTAAGGTAAAAGACTCTGGAGCAGGAATAAATCCTCAAGACA 1732
Query 1735 TTCCAAAGATTTTCACTAAATTTGCTCAAACACAATCTTTAGCGACGAGAAGCTCGGGTG 1794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TTCCAAAGCTTTTCACTAAATTTGCTCAAACACAATCTTTAGCGACGAGAAGCTCGGGTG 1792
Query 1795 GTAGTGGGCTTGGCCTCGCCATCTCCAAGAGGTTTGTGAATCTGATGGAGGGTAACATTT 1854
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1793 GTAGTGGGCTTGGCCTCGCCATCTCCAAGAGGTTTGTGAATCTAATGGAGGGCAACATTT 1852
Query 1855 GGATTGAGAGCGATGGTCTTGGAAAAGGATGCACGGCTATCTTTGATGTTAAACTTGGGA 1914
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1853 GGATTGAGAGCGATGGTCTTGGAAAAGGATGCACAGCTATCTTTGATGTTAAACTTGGGA 1912
Query 1915 TCTCAGAACGTTCAAACGAATCTAAACAGTCGGGCATACCGAAAGTTCCAGCCATTCCCC 1974
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 TTTCAGAGCGTTCAAACGAATCTAAACAGTCGGGCATACCGAAAGTTCCAGCCATTCCCC 1972
Query 1975 GACATTCAAATTTCACTGGACTTAAGGTTCTTGTCATGGATGAGAACGGGGTAAGTAGAA 2034
||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1973 GACATTCAAGTTTCACTGGACTTAAAGTTCTTGTCATGGACGAGAATGGGGTAAGTAGAA 2032
Query 2035 TGGTGACGAAGGGACTTCTTGTACACCTTGGGTGCGAAGTGACCACGGTGAGTTCAAACG 2094
||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 2033 TGGTGACAAAGGGACTTCTTGTACACCTTGGATGCGAAGTTACCACTGTGAGTTCAAACG 2092
Query 2095 AGGAGTGTCTCCGAGTTGTGTCCCATGAGCACAAAGTGGTCTTCATGGACGTGTGCATGC 2154
|||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 2093 AGGAATGTCTCGGAGTTGTATCCCATGAGCACAAAGTAGTCTTCATGGACGTGTGCTTGC 2152
Query 2155 CCGGGGTCGAAAACTACCAAATCGCTCTCCGTATTCACGAGAAATTCACAAAACAACGCC 2214
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2153 CCGGGGTCGAAAACTACCAAATCGCCCTCCGTATACACGAGAAATTCACAAAACAACGCC 2212
Query 2215 ACCAACGGCCACTACTTGTGGCACTCAGTGGTAACACTGACAAATCCACAAAAGAGAAAT 2274
|||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2213 ACCAACGGCCACTACTCGTGGCACTCACTGGTAACACAGACAAATCCACAAAAGAGAAAT 2272
Query 2275 GCATGAGCTTTGGTCTAGACGGTGTGTTGCTCAAACCCGTATCACTAGACAACATAAGAG 2334
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 2273 GCATGAGCTTCGGTCTAGACGGCGTGTTGCTCAAGCCCGTATCACTAGACAACATGAGAG 2332
Query 2335 ATGTTCTGTCTGATCTTCTCGAGCCCCGGGTACTGTACGAGGGCATGTAAAGGC 2388
| ||||||||||||||||| || | |||||| || |||||||||||||||||||
Sbjct 2333 ACGTTCTGTCTGATCTTCTTGAACGCCGGGTTCTATACGAGGGCATGTAAAGGC 2386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104671993260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5