BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66345.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925788 jgi|Araly1|925788|scaffold_201349.1 2100 0.0
> Ahg925788 jgi|Araly1|925788|scaffold_201349.1
Length=1660
Score = 2100 bits (1137), Expect = 0.0
Identities = 1468/1625 (90%), Gaps = 34/1625 (2%)
Strand=Plus/Plus
Query 14 TGCGCCGCTTAGTAGAACAACAACAATGGCGTTACTT-AGTTTCTCAATC-AACCCGATC 71
|||||||||| ||||||||||||||||||||| |||| | || ||| ||| || || |||
Sbjct 22 TGCGCCGCTTCGTAGAACAACAACAATGGCGTCACTTCA-TTCCTCCATCAAAACC-ATC 79
Query 72 TCCAAAACTCATCCATGGCTTCTTCTCCTTCTCCTCCAAAACTAat-ccaaatccaaaca 130
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 80 TCCAAAACTCATCCATGGCTTCTTCTCCTTCTCCTCCAAAACT-ATCCCAAATCCAAACA 138
Query 131 aacaacaacaaatcctcatcgactacatctccaaatccctccaatccaacGATACCTGGG 190
|||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||
Sbjct 139 AACAACAACAAATCCTCATCGATTCCATCTCCAAATCCCTCCAGTCCAACGATAACTGGG 198
Query 191 AAACTCTCTCCACCAAATTCTCCTCCATAGATCTATCAGATTCCTTAATCGAAACAATCC 250
|||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||
Sbjct 199 AAACTCTCTCCACCAAATTCTCCTCCATCGATTTATCAGATTCCCTCATCGAAACAATCC 258
Query 251 TTCTCCGATTCAAAAACCCCGAAACCGCCAAACAAGCTTTATCCTTCTTCCATTGGTCAT 310
||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 259 TTCTCCGATTCAACTCCCCCGAAACCGCGAAACGAGCTTTAACCTTCTTCCATTGGTCAG 318
Query 311 CCCACACTCGAAATCTCCGTCACGGAATCAAATCTTACGCAT-TGACGATTCATATCCTT 369
| ||||||||||||||||| || ||||||| ||||||||| | | |||||||| ||||||
Sbjct 319 CTCACACTCGAAATCTCCGCCATGGAATCAGATCTTACGC-TGTCACGATTCACATCCTT 377
Query 370 GTCAAAGCTCGATTACTAATCGACGCTCGAGCTTTAATTGAATCGTCTCTGTTAAATTCT 429
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
Sbjct 378 GTCAAAGCTCGATTACTAATCGACGCTCGAGCTTTAATCGAATCGTCTCTGTTGAA-T-T 435
Query 430 CCTCCCGATTCGGATTTAGTCGATTCGTTGTTAGATACTTATGAG-ATCTCATCTTCTAC 488
| | | ||| ||||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 436 CAT--C--TTCCGATTTAGTCGATTCGTTGTTAGATACTTATGTGAAT-TCGTCTTCTAC 490
Query 489 TCCTTTAGTGTTTGATTTGTTAGTTCAATGTTACGCTAAGATTAGGTATTTGGAATTAGG 548
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 491 TCCTTTAGTGTTTGATTTGTTAGTTCAATGTTATGCTAAGATTAGGTATTTGGAATTAGG 550
Query 549 GTTTGATGTGTTCAAGAGATTGTGTGATTGTGGATTTACTCTTAGTGTGATTACTTTAAA 608
||||| || || ||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 551 ATTTGAAGTTTTTAAGAGATTGTGTGATTGTGGATTTAGTCTAAGTGTGATTACTTTGAA 610
Query 609 CACGTTGATTCATTACTCTTCGAAATCGAAGATTGATGATCTTGTGTGGAGGATTTACGA 668
||||||||||||| | || |||||||||| | ||||||||||||||||||||||||
Sbjct 611 TACGTTGATTCATTTCGCTGCGAAATCGAATCGGGTTGATCTTGTGTGGAGGATTTACGA 670
Query 669 ATGTGCGATTGATAAAAGGATTTATCCGAACGAGATTACGATTCGGATAATGATTCA-AG 727
||||| |||||||| ||||||||||||||||||| |||||||||||||||||| | |
Sbjct 671 GTGTGCTATTGATAAGAGGATTTATCCGAACGAGACGACGATTCGGATAATGATT-AGTG 729
Query 728 TGTTGTGTAAAGAAGGGAGATTGAAAGAAGTTGTTGATTTGTTAGATAGGATTTGTGGTA 787
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 730 TGTTGTGTAAAGAAGGGAGATTGAAGGAAGTTGTTGATTTGTTAGATAGGATTTATGGTG 789
Query 788 AGAGATGTTTACCTTCAGTGATTGTGAATACGAGTTTAGTGTTTAGGGTTTTGGAAGAGA 847
||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 790 AGAGATGTTTACCTTCAGTGATTGTTAATACGAGTTTGGTGTTTCGGGTTTTGGAAGAGA 849
Query 848 TGAGAATAGAGGAGAGTATGAGTTTGTTGAAGAGATTGTTGATGAAGAATATGGTTGTTG 907
|||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 850 AGAGAGTTGAGGAGAGTATGAGTTTGTTGAAGAGGTTGTTGATGAAGAATATGGTTGTTG 909
Query 908 ATACTATTGGTTATTCGATTGTTGTTTATGCGAAAGCTAAGGAAGGTGATTTGGTGTCTG 967
|||| |||||||||||||||||||| ||||||||| | |||||||| ||||||| || ||
Sbjct 910 ATACAATTGGTTATTCGATTGTTGTGTATGCGAAAACGAAGGAAGGGGATTTGGAGTGTG 969
Query 968 CACGGAAGGTGTTTGATGAAATGCTTC-AACGAGGTTTTAGTGCGAATTCGTTTGTTTAT 1026
| ||||| ||||||||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct 970 CGCGGAATGTGTTTGATGAAATGATTCGTA-GAGGTTTTAGTGCGAATGCGTTTGTTTAT 1028
Query 1027 ACGG-TGTTTGTTAGAGTTTGTTGTGAAAAG-GGTGATGTTAAAGAAGCGGAGAGGTTGT 1084
|||| | ||||||||||||||||| | |||| ||||||||| |||| |||||| |||||
Sbjct 1029 ACGGCT-TTTGTTAGAGTTTGTTGCG-AAAGAGGTGATGTTGAAGAGGCGGAGCGGTTGA 1086
Query 1085 TGAGTGAGATGGAGGAGTCTGGAGTCAGTCCGTATGACGAGACGTTTAATTGTCTTATCG 1144
|||||||||||||||| |||||||| | ||||||||| || || ||||||| |||||| |
Sbjct 1087 TGAGTGAGATGGAGGATTCTGGAGTGAATCCGTATGAAGAAACTTTTAATTTTCTTATTG 1146
Query 1145 -GTGGTT-TCGCGAGGTTCGGGT-GGGAAGAGAAAGGTTTGGAGTATTGTGAGGTAATGG 1201
| |||| | ||||| || ||| | ||||| ||||||||||||||||| ||| | ||||
Sbjct 1147 AG-GGTTGT-GCGAGATT-TGGTAGAGAAGAAAAAGGTTTGGAGTATTGCGAGATTATGG 1203
Query 1202 TAACGAGAGGGCTTATGCCTAGTTGTTCGGCTTTCAATGAGATGGTTAAGAG-TGTAAGT 1260
| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1204 TTGCAAGAGGGCTTATGCCTAGTTGTTCGGCTTTCAATGAGATGGTTAAGAGAT-TAAGT 1262
Query 1261 AAGATTGAGAACGTGAATCGCGCAAATGAAATCTTAACAAAGTCGATAGATAAAGGGTTT 1320
|||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1263 GAGATTGAGAACGTGAATCGCGCTAATGAAATCCTAACCAAGTCGATAGATAAAGGGTTT 1322
Query 1321 GTGCCCGATGAACATACGTACTCTCATCTGATTCGAGGGTTTATAGAAGGAAAC-GATAT 1379
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||
Sbjct 1323 GTGCCCGATGAACATACGTACTCTCATCTGATTCGAGGATTTGTAGAAGGAAACAG-TAT 1381
Query 1380 CGATCAAGCGCTTAAGCTGTTCTACGAGATGGAATACCGAAAGATGTCTCCTGGTTTCGA 1439
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1382 CGATCAAGCGCTTAAGCTGTTCTACGAGATGGAATACCGAAAGATCTCTCCTGGTTTCGA 1441
Query 1440 GGTGTTTAGGTCACTAATTGTGGGACTCTGCACTTGTGGTAAAGTGGAAGCCGGAGAAAA 1499
|||||| ||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||
Sbjct 1442 GGTGTTCAGGTCACTAATCGTGGGACTTTGCGCTTGCGGTAAAGTTGAAGCCGGAGAAAA 1501
Query 1500 GTACTTGAAAATTATGAAGAAGAGGTTGATAGAGCCTAATGCAGATATATATGACGCATT 1559
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1502 GTACTTGAGAATTATGAAGAGGAGATTGATAGAGCCTAATGCAGATATATATGAAGCAAT 1561
Query 1560 GATTAAGGCATTTCAGAAAATTGGTGATAAAACAAATGCTGATAGAGTTTATAATGAGAT 1619
||| || ||||||||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 1562 GATCAATGCATTTCAGAAAATTGGCGATAAAACGAATGCTGATAAAGTTTATAATGAGAT 1621
Query 1620 GATTT 1624
|||||
Sbjct 1622 GATTT 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5