BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66350.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475738 jgi|Araly1|475738|fgenesh2_kg.2__868__AT1G66350.1 2555 0.0
Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 113 4e-24
> Ahg475738 jgi|Araly1|475738|fgenesh2_kg.2__868__AT1G66350.1
Length=1801
Score = 2555 bits (1383), Expect = 0.0
Identities = 1600/1706 (94%), Gaps = 10/1706 (1%)
Strand=Plus/Plus
Query 1 ATATCATTATTTAAAAATAGAATTTTATTTTTCTTTCTTCTTCTTCAATTATTATGACAC 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATCATTATTTAAAAAAAGAATTTTATTTTTCTTTCTTCTTCTTCAATTATTATGACAC 60
Query 61 TCCCGTGTTCCTAAtcttttctcttattcttctctttcttctcatcttACAAAATCTTGC 120
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 TCCCGTGTTCCTAATCTCTTCTCATATTCTTCTCTTTCTTCTCAGCTTACAAAATCTTGA 120
Query 121 AAATCAATTTTAATGAAGAGAGAGCACAACCACCGTGAATCATCCGCCGGAGAAGGTGGG 180
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 121 AAATCAATTTTAATGAAGAGAGAGCACAACCACCGTGAATCCTCCACCGGAGAAGGTGGT 180
Query 181 AGTTCATCAATGACGACGGTGATTAAAGAAGAAGCTGCCGGAGTTGACGAGCTTTTGGTT 240
|| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCATCAATGAAGACGGTGATTAAGGAAGAAGCTGCCGGAGTTGACGAGCTTTTGGTG 240
Query 241 GTTTTAGGTTACAAAGTTCGATCATCCGACATGGCTGACGTGGCACACAAGCTTGAACAG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTTAGGTTACAAAGTTCGATCTTCCGACATGGCTGACGTGGCACACAAGCTTGAACAG 300
Query 301 TTAGAGATGGTTCTTGGTGATGGAATCTCGAATCTTTCTGATGAAACTGTTCATTACAAT 360
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTAGAGATGGTTCTTGGAGATGGAATCTCGAATCTTTCTGACGAAACTGTTCATTACAAT 360
Query 361 CCTTCTGATCTCTCTGGTTGGGTCGAAAGCATGCTCTCGGATCTTGACCCGACCCGGATT 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 361 CCTTCTGATCTCTCTGGTTGGGTCGAAAGCATGCTGTCGGATCTTGACCCGACCCGGACT 420
Query 421 CAAGAAAAGCCTGACTCAGAGTACGATCTTAGAGCTATTCCTGGCTCTGCAGTGTATCCA 480
|||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAGAAAAACCCGACTCGGAGTATGATCTTAGAGCTATTCCTGGCTCTGCAGTGTATCCA 480
Query 481 CGTGACGAGCACGTGACTCGTCGGAGCAAGAGGACGAGAATTGAATCGGAGTTATCCTCT 540
||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||| ||
Sbjct 481 CGTGACGAGCACGTGACTCGTCGGAACAAGAGAACGAGAACTGAATCAGAGTTATCGTCC 540
Query 541 ACGCGCTCTGTGGTGGTTTTGGATTCTCAAGAAACTGGAGTGCGTTTAGTCCACGCGCTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACGCGCTCTGTGGTGGTTTTGGATTCTCAAGAAACTGGAGTGCGTTTAGTCCACGCGCTC 600
Query 601 TTAGCTTGTGCTGAAGCTGTTCAACAGAACAATTTGAAGTTAGCCGACGCGCTCGTGAAG 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TTAGCTTGTGCTGAAGCTGTTCAACAGACCAATTTGAAGTTAGCCGACGCGCTCGTGAAG 660
Query 661 CACGTGGGGTTACTCGCGTCCTCTCAAGCTGGTGCTATGAGGAAAGTCGCGACTTACTTC 720
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 661 CACGTGGGTTTACTCGCGTCCTCTCAAGCTGGTGCTATGAGGAAGGTCGCGACTTATTTC 720
Query 721 GCTGAAGGGCTTGCGAGAAGGATTTACCGTATTTACCCTCGAGACGATGTCGCGTTGTCT 780
||||||||||||||||| ||||||||||| |||||||||||||| || || || |||||
Sbjct 721 GCTGAAGGGCTTGCGAGGAGGATTTACCGGATTTACCCTCGAGATGACGTGGCTTTGTCG 780
Query 781 TCGTTTTCGGACACTCTTCAGATTCATTTCTATGAGTCTTGTCCGTATCTCAAGTTTGCG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TCGTTTTCGGACACTCTTCAGATTCATTTCTATGAGTCTTGTCCGTATCTGAAGTTTGCG 840
Query 841 CATTTTACGGCGAATCAAGCGATACTTGAGGTTTTTGCTACGGCGGAGAAGGTTCATGTT 900
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 841 CATTTTACGGCGAATCAAGCGATACTTGAGGCTTTTGCTATGGCTGAGAAGGTTCATGTT 900
Query 901 ATTGATTTAGGACTTAACCATGGTTTACAATGGCCGGCTTTGATTCAAGCTCTTGCT-TT 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 ATTGATTTAGGACTTAATCATGGTTTACAATGGCCGGCTTTGATTCAAGCTCTTGCTCTT 960
Query 960 ACGTCCTAATGGTCCACCGGATTTTCGGTTAACCGGGATCGGTTATTCGTTAACCGATAT 1019
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 961 -CGTCCTAATGGTCCACCGGATTTTCGGTTAACGGGGATCGGTTCTTCGTTAACCGATAT 1019
Query 1020 TCAAGAAGTTGGTTGGAAACTTGGTCAGCTTGCGAGTACTATTGGTGTCAATTTCGAATT 1079
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1020 TCAAGAAGTTGGTTGGAAACTTGGTCAGCTCGCGAGTACTATTGGTGTCAATTTCGAGTT 1079
Query 1080 CAAGAGCATTGCTTT-AAACAATTTGTCTGATCTTAAACCGGAAATGCTAGACATTAGAC 1138
|||||||||||||| || | ||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 TAAGAGCATTGCTTTGAATC-ATTTGTCTGATCTTAGACCGGAAATGCTAGACATTAGAC 1138
Query 1139 CCGGTTTAGAATCAGTGGCGGTTAACTCGGTCTTCGAGCTTCATCGCCTCTTAGCTCATC 1198
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1139 CCGGTTCAGAATCAGTGGCGGTTAACTCGGTTTTCGAGCTTCATCGCCTCTTAGCCCATC 1198
Query 1199 CCGGTTCCATCGATAAGTTTTTATCGACAATCAAATCAATCCGACCGGATATAATGACTG 1258
| ||||| |||||||||||| ||||||| || || ||||||||||| | || |||||||
Sbjct 1199 CTGGTTCGATCGATAAGTTTATATCGACGATTAAGTCAATCCGACCAAACATCATGACTG 1258
Query 1259 TGGTCGAGCAAGAAGCAAACCATAACGGTACCGTA-TTTCTCGATCGGTTCACGGAATCG 1317
|||||||||||||||| ||||| || || || | |||||||| ||||||||||||||
Sbjct 1259 TGGTCGAGCAAGAAGCGAACCACAATGGCGCC-AATTTTCTCGACCGGTTCACGGAATCA 1317
Query 1318 CTACATTACTATTCGAGCTTATTCGACTCGCTCGAGGGCCCGCCAAGCCAAGACCGAGTG 1377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTACATTACTACTCGAGCTTATTCGACTCGCTCGAGGGCCCGCCAAGCCAAGACCGAGTG 1377
Query 1378 ATGTCGGAGTTATTCCTAGGACGGCAGATACTAAACCTTGTGGCATGCGAAGGAGAAGAC 1437
|||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||
Sbjct 1378 ATGTCGGAGTTATTCCTAGGACGGCAGATATTGAACCTAGTGGCATGCGAAGGGGAAGAC 1437
Query 1438 CGGGTAGAGAGGCATGAGACT-TTAAATCAGTGGAGAAACCGGTTCGGTTTAGGAGGATT 1496
||||| || || || ||||| |||| ||| ||||||||||||||||||| ||||||||
Sbjct 1438 CGGGTTGAAAGACACGAGACGCTTAA-TCAATGGAGAAACCGGTTCGGTTCGGGAGGATT 1496
Query 1497 TAAACCGGTTAGTATCGGTTCGAACGCGTATAAGCAAGCAAGCATGTTGTTGGCACTTTA 1556
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1497 TAAACCGGTTAATATCGGTTCGAACGCGTATAAGCAAGCGAGCATGTTGTTGGCACTCTA 1556
Query 1557 TGCCGGGGCTGATGGGTATAATGTGGAAGAGAATGAAGGTTGTTTGTTGCTTGGATGGCA 1616
|||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1557 TGCCGGAGCTGATGGGTATAATGTTGAGGAGAATGAAGGTTGTTTGTTGCTAGGATGGCA 1616
Query 1617 AACGCGACCGCTTATTGCAACATCTGCGTGGCGAATCAATCGTGTGGAATAAAAATAAAT 1676
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1617 AACGCGACCGCTTATTGCTACATCTGCTTGGCGAATCAATCGTGTGGAATAAAA-TAAAT 1675
Query 1677 AATGGGAAAAGTGAAAATGTGCTATA 1702
|||| |||| ||||||||||| ||||
Sbjct 1676 AATGAGAAA-GTGAAAATGTGTTATA 1700
Score = 102 bits (55), Expect = 9e-21
Identities = 80/91 (88%), Gaps = 5/91 (5%)
Strand=Plus/Plus
Query 1751 TTTTATGAATTCTAAATTTTGTTCACTTGTCACGAGATTTTGACCTCGCATAAATAGACT 1810
||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1712 TTTCATGAAATCTAAATTTTGTGCAATTGTCACGAGATTTTGACCTCGCATAAATAGACT 1771
Query 1811 ATTA-CGTCA--G-GGTCAGGCCAATGAAAT 1837
||| | || | |||||||||||||||||
Sbjct 1772 ATTGTC-TCTTTGAGGTCAGGCCAATGAAAT 1801
> Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1
Length=1957
Score = 113 bits (61), Expect = 4e-24
Identities = 163/209 (78%), Gaps = 20/209 (10%)
Strand=Plus/Plus
Query 226 GACGAGCTT-TTGGTTGTTTTAGGTTACAAAGTTCGATCATCCGACATGGCTGACGTGGC 284
||||||||| || | |||||| || ||||| |||||||| || ||||||||||| || ||
Sbjct 259 GACGAGCTTCTT-GCTGTTTTGGGCTACAAGGTTCGATCTTCAGACATGGCTGATGTTGC 317
Query 285 ACACAAGCTTGAACAG-TTAGAGATGGTTCTTG----GTG--A-TGGAATC-TCGAAT-C 334
||| |||||||||||| || || |||| ||||| || | ||| || || |||
Sbjct 318 ACAGAAGCTTGAACAGCTT-GAAATGG-TCTTGTCCAATGATATTGG-TTCTTCTAATAA 374
Query 335 TTTC-T-GATGAAACTGTTCATTACAATCCTTCTGATCTCTCTGGTTGGG-TCGAAAGCA 391
| | | | || ||||||||||||||||||||||||||||| ||||||| || | ||||
Sbjct 375 TGCCTTAAACGACACTGTTCATTACAATCCTTCTGATCTCTCCGGTTGGGCTC-AGAGCA 433
Query 392 TGCTCTCGGATCTTGACC-CGACCCGGAT 419
||||||| || ||| || | ||||||||
Sbjct 434 TGCTCTCCGAGCTTAACTACTACCCGGAT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5