BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66360.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908122 jgi|Araly1|908122|Al_scaffold_0002_1203 671 0.0
> Ahg908122 jgi|Araly1|908122|Al_scaffold_0002_1203
Length=507
Score = 671 bits (363), Expect = 0.0
Identities = 447/488 (92%), Gaps = 3/488 (1%)
Strand=Plus/Plus
Query 55 ATGGAGAATATGTTAGGTCTTCTAAGACTTCATGTGATTAGAGGTGTTAATCTTGCCATC 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATATGTTAGGTCTTCTAAGACTTCATGTGATTAGAGGTGTTAATCTTGCCATT 60
Query 115 AGAGATTCTCAAAGCAGTGATCCTTATGTCATTGTCCGTATGGGAAAACAGAAGCTACGA 174
||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 61 AGAGATTCTCATAGCAGCGATCCTTACGTCATTGTCCGTATGGGCAAACAGAAGTTACGA 120
Query 175 ACCCGTGTGATGAAAAAGAATTTGAATACAGAATGGAACGAAGACTTGACACTTTCTGTT 234
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 121 ACCCGTGTGATGAAAAAGAATTTAAATCCGGAATGGAACGAAGACTTGACACTTTCTGTT 180
Query 235 ACTGATCCAACTCTTCCTGTCAAGATCATGGTGTACGATAGGGACAGGTTCTCAAGGGAT 294
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 181 ACTGATCCAACTCTTCCTGTCAAAATCATGGTGTACGATAGAGACTGGTTCTCAAGGGAT 240
Query 295 GATAAGATGGGAGATGCGATTTTTCACATTGATCCGTTCCTTGAAGCCATCAGAATCCAA 354
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 GATAAGATGGGAGATGCGGTTTTCCACATTGATCCGTTCCTCGAAGCCATCAGAATCCAA 300
Query 355 AACCAACTAGGAGGACTACCTGAGGGGACTGTAATAATGAAGATACAGGCAAGCAGACAA 414
|| || || |||||||| || || ||||| || ||||||||||||||||| ||||| ||
Sbjct 301 AATCAGCTCGGAGGACTTCCCGATGGGACCGTCATAATGAAGATACAGGCTAGCAGGCAG 360
Query 415 AACTGCTTGTCAGAAGAGAGCAAGATTGTATGGCACAAAGGAAA---GATTGTCCAGAAC 471
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 361 AACTGCTTGTCAGAAGAGAGCAAGATTGTGTGGCACAAAGGAAAAAAGATTGTCCAAAAT 420
Query 472 ATGTTCCTTAAGCTTCAGAATGTTGAACGAGGGGAGATAGAGCTGCAGCTTGAGTGGATC 531
||||| |||| ||| ||||| ||||| || |||||| | ||| |||||||||||||||||
Sbjct 421 ATGTTTCTTAGGCTCCAGAACGTTGAGCGCGGGGAGGTCGAGTTGCAGCTTGAGTGGATC 480
Query 532 GATGTCTC 539
||||||||
Sbjct 481 GATGTCTC 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5