BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66370.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1 811 0.0
Ahg925797 jgi|Araly1|925797|scaffold_201358.1 601 3e-171
Ahg925796 jgi|Araly1|925796|scaffold_201357.1 542 2e-153
Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1 532 1e-150
Ahg925795 jgi|Araly1|925795|scaffold_201356.1 361 5e-99
> Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1
Length=750
Score = 811 bits (439), Expect = 0.0
Identities = 566/626 (90%), Gaps = 14/626 (2%)
Strand=Plus/Plus
Query 15 CAAAGGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCAT 74
|||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGCAT 74
Query 75 TGATAAGTATGGAGAAGGCAAATGGCATCGA-GTTCCTTTAAGAACTGGTCTCAATCGGT 133
|||||||||||||||| |||||||||| | | |||||||||||| |||| || |||||||
Sbjct 75 TGATAAGTATGGAGAAAGCAAATGGCA-CCAGGTTCCTTTAAGAGCTGGGCTAAATCGGT 133
Query 134 GCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGAA 193
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
Query 194 AACTCTGCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAGGT 253
|| | ||||| |||||||| || ||| |||||||||| || || |||||||||||||| |
Sbjct 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
Query 254 GGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTGGA 313
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
Query 314 ACACTCATTTGAGTAAGAAGCACGATGAACGATGCT-GTAAGACGAAGATGATAAACAAA 372
|||| ||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |
Sbjct 314 ACACCCATTTGAGTAAGAAGCATGATGAACTATG-TCGTAAGACGAAGATGATAAACAGA 372
Query 373 AACATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGGCCT 432
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 373 AACATTACTTCCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTTAAAGCCTCGACCT 432
Query 433 CGATCCTTCTCCGATAAAAATAGTTGCAACGATGTCAATATCTTGCCAAAAGTTGACGTT 492
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 433 CGATCCTTCTCCGATAAAAATAGTTGCAACGATCTCAATGTCCTGCCAAAAGTTGACGTA 492
Query 493 GTTCCTTTACATC-TT-GGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACATGTA 550
||||||| ||| || ||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 493 GTTCCTT--CATGGTTTGGACTCAACAACAATAATGTTTGTGAAAGGAGTATCACATGTA 550
Query 551 ACAAAGATGAGCAAAAAGATAAGCTTATTAATATTAATCTATTGGATGGAGATAATA-TG 609
||||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||| |
Sbjct 551 ACAAAGATGAGCAGAAAGATAAGCTTACTAATA--A-TCTAATGGATGGAGATAATACT- 606
Query 610 TGGTGGGAAAGTTTACTGGAGGCAGA 635
|||||||| ||||||||||||| |||
Sbjct 607 TGGTGGGAGAGTTTACTGGAGG-AGA 631
> Ahg925797 jgi|Araly1|925797|scaffold_201358.1
Length=788
Score = 601 bits (325), Expect = 3e-171
Identities = 531/628 (85%), Gaps = 23/628 (4%)
Strand=Plus/Plus
Query 16 AAAGGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCATT 75
|||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||| |||
Sbjct 37 AAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAATGTATT 96
Query 76 GATAAGTATGGAGAAGGCAAATGGCATCGAGTTCCTTTAAGAACTGGTCTCAATCGGTGC 135
|||||||||||||||||||||||||| | ||||||||| ||| |||| || || ||||||
Sbjct 97 GATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTGAGAGCTGGGCTAAACCGGTGC 156
Query 136 CGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGAAAA 195
|||||||||||||||| |||||||| || ||||| ||||||||||| ||||| |||| |
Sbjct 157 AGAAAGAGTTGTAGACTAAGATGGTTAAACTATTTAAAGCCAAGTATCAAGAGGGGAAGA 216
Query 196 CTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAGGTG 254
| | |||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 217 -TTTAGCTCTGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCTTCTCGGAAATAGGTG 275
Query 255 GTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTGGAA 314
|||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 276 GTCCCTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATGTCAAAAATTACTGGAA 335
Query 315 CACTCATTTGAGTAAGAAGCACGATGAACGATGCTGTAAGACGAAGATGATAAACAAAAA 374
||| ||| | |||||||| || |||||| ||| |||||||| || |||| ||| |||||
Sbjct 336 CACCCATCTAAGTAAGAA--AC-ATGAACCATGTTGTAAGACTAAAATGAAAAAGAAAAA 392
Query 375 CATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGGCCTCG 434
||| | ||| | |||||| || ||| |||||||||||||||||| |||||||| |||||
Sbjct 393 CATCATTTCCCCTCCTACAACACCGGTCCAAAAAATCGATGTTTTTAAGCCTCGACCTCG 452
Query 435 ATCCTTCTCCGATAAA-AATAGTTGCAACGATGTCAATA-TCTTGCCAAAAGTTGACGTT 492
||||||||||| |||| ||| | || | | || ||| | ||| ||| ||||||| ||
Sbjct 453 ATCCTTCTCCG-TAAACAATGGCTGTAGCCATCTCAGTGGTCTA-CCAGAAGTTGAT-TT 509
Query 493 G-TTCCTTTACAT-C-TTGGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACATGT 549
|||||| | | | ||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 510 AATTCCTTC-C-TGCCTTGGACTCAACAACAATAATGTTTGTGAAAATAGTATCACATGT 567
Query 550 AACAAAGATGA-GCAAAAAGATAAGCTTATTAATATTAATCTATTGGATGGAGATAATAT 608
||||||||||| | | |||||| | || | |||| | |||| || |||||||||||||
Sbjct 568 AACAAAGATGATG-AGAAAGATGATTTTGTGAATA--A-TCTAATGAATGGAGATAATAT 623
Query 609 GTGGTGGGA-AAGTTTACTGGAGGCAGA 635
||||| ||| || |||||| |||| |||
Sbjct 624 GTGGTTGGAGAA-TTTACTAGAGG-AGA 649
> Ahg925796 jgi|Araly1|925796|scaffold_201357.1
Length=789
Score = 542 bits (293), Expect = 2e-153
Identities = 609/755 (81%), Gaps = 48/755 (6%)
Strand=Plus/Plus
Query 14 CCAAAGGGTTGA-GAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGC 72
|||| ||||||| | |||||| |||||||| |||||||||||| |||||||||| ||||
Sbjct 36 CCAATGGGTTGACG-AAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGAAATGT 94
Query 73 ATTGATAAGTATGGAGAAGGCAAATGGCATCGAGTTCCTTTAAGAACTGGTCTCAATCGG 132
||||||||||||||||||||||||||||| | ||||||||||||| |||| || |||||
Sbjct 95 ATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTAAGAGCTGGGCTAAATCGA 154
Query 133 TGCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGA 192
||| | |||||||||||||| |||||||| || ||||||||||||||||| || ||||||
Sbjct 155 TGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAATAGAGGA 214
Query 193 AAACTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAG 251
||| | | || | ||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 215 AAATT-TAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCCATAAGCTTCTAGGAAATAG 273
Query 252 GTGGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTG 311
||||||||||| |||||| ||||||||| ||| || || |||||||| |||||||||||
Sbjct 274 ATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAAATGATGTTAAGAATTACTG 333
Query 312 GAACACTCATTTGAGTAAGAAGCACGATGAACGATGCTGTAAGA-CGAAGATGATAAAC- 369
|||||| |||||||||| || ||| ||||| | |||| | | || |||| ||||
Sbjct 334 GAACACCCATTTGAGTAGGAGGCA---TGAACTTTTTTGTA-GTTCCAAAATGA-AAACG 388
Query 370 AAAAACATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGG 429
|||||||||||||| | |||||| || | | |||||||||||| ||||||||||||||
Sbjct 389 AAAAACATTACTTCCCCTCCTACAACACCTGTCCAAAAAATCGAAGTTTTAAAGCCTCGA 448
Query 430 CCTCGATCCTTCTCCGATAAAAATAGT-TGCAACGATGTCAATATCTTGCCAAAAGTTGA 488
|||||||||||||||| |||||| | || | | || ||||| ||| |||||||||||
Sbjct 449 CCTCGATCCTTCTCCGTTAAAAAC-GCATGTAGCCATCTCAATGGCTTTCCAAAAGTTGA 507
Query 489 CGTTGTTCCTTTACAT-CT-TGGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACA 546
||| ||||| ||| || ||||||||| |||||||||||||||||||||||||| | |
Sbjct 508 TGTTATTCCTC--CATGCTCTGGACTCAATAACAATTATGTTTGTGAAAGTAGTATCATA 565
Query 547 TGTAACAAAGATGAGCAAAAAG-ATAAG-CT-TAT-TAATATTAATCTATTGGATGGAGA 602
||| | |||||||| || || || || || | | ||| | |||||| ||||| |||
Sbjct 566 TGTGGCGAAGATGAG-AAGAATTATGAGTCTGTGTATAA-A--AATCTAATGGATAAAGA 621
Query 603 TAATATGTGGTGGGAA-AGTTTACTGGAG-GC-A-GATGT-G-T----TGGGTCCAGAAG 652
|||||||||| | || |||||||| ||| || | || | | | ||||||||||||
Sbjct 622 CAATATGTGGTTG-AAGAGTTTACTAGAGAGCCAAGAGGCAGATGCACTGGGTCCAGAAG 680
Query 653 CTACGGA-AACAGCAAA-GGGTGTGACCTTACCGCTTGACT-TTGAGCAAATTTGGG-CT 708
| ||| | ||||| ||| ||| | || || |||| | |||| ||| ||||| ||
Sbjct 681 CAACG-ACAACAGAAAACGGG-GCCACTTTGGAATTTGA-TGTTGAACAACTTTGGAACT 737
Query 709 CGGTTTGATGAAGAGACT-TTAGAACT-GAATTAG 741
| ||||||| ||||||| || ||||| || ||||
Sbjct 738 TG-TTTGATGGAGAGACTGTT-GAACTTGA-TTAG 769
> Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1
Length=903
Score = 532 bits (288), Expect = 1e-150
Identities = 524/634 (83%), Gaps = 31/634 (5%)
Strand=Plus/Plus
Query 14 CCAAAGGGTTGA-GAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGC 72
|||||||| | | |||||||| | |||||| |||||||||||| ||| ||||| || |||
Sbjct 64 CCAAAGGGCT-ACGAAAAGGTGCTTGGACTGCTGAAGAAGATAGTCTTTTGAGACAGTGC 122
Query 73 ATTGATAAGTATGGAGAAGGCAAATGGCATCGAGTTCCTTTAAGAACTGGTCTCAATCGG 132
||| |||||| ||| |||||||||||||| | ||||||| ||||| |||| || || |||
Sbjct 123 ATTAATAAGTTTGGTGAAGGCAAATGGCACCAAGTTCCTGTAAGAGCTGGGCTAAACCGG 182
Query 133 TGC-CGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGG 191
||| |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 183 TGCAGGAAA-AGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATCAAGAGAGG 241
Query 192 AAAACTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATA 250
|||||| | |||| |||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 242 AAAACT-TAGCTCTGATGAAGTCGATCTTCTTCTTCGCCTTCATAGGCTTCTAGGAAATA 300
Query 251 GGTGGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACT 310
||||||| || || ||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 301 GGTGGTCTTTAATTGCTGGAAGATTACCTGGTCGGACCGCAAATGATGTCAAGAATTACT 360
Query 311 GGAACACTCATTTGAGTAAGAAGCACGATGAACGATGCTGTAAGA-CGAAGATGATAAAC 369
||||||||||| |||||||||| || |||||| ||| ||||||| | ||||||| |||
Sbjct 361 GGAACACTCATCTGAGTAAGAA--AC-ATGAACCATGTTGTAAGATC-AAGATGAAAAAG 416
Query 370 AAAAACATTACTTCTCAT-CCTACTTCATCGGCCCAAAAAATCGATGTTT-TAAAGCCTC 427
||||||||||| | ||| ||||| || | || | ||||||| |||||| ||| |||||
Sbjct 417 AAAAACATTACGCC-CATTCCTACAACACCAGCACTAAAAATCAATGTTTATAA-GCCTC 474
Query 428 GGCCTCGATCCTTCTCCGATAAAAAT-AGTTGCAACGATGTCAATATCTTGCCAAAAGTT 486
| |||||||||||| | | ||| || | ||||||| || ||||| | |||| |||||
Sbjct 475 GACCTCGATCCTTCGCAGTTAACAACGA-TTGCAACCATCTCAATGGCCCGCCAGAAGTT 533
Query 487 GACGTTGTTCCTTTACAT-C-TTGGACTCAACAACAATTATGTTTGTGA-AAGTAGTATT 543
|||||| |||| ||| | ||||||||||||||||| |||||||||| || ||||||
Sbjct 534 GACGTTAATCCTC--CATGCCTTGGACTCAACAACAATAATGTTTGTGACAA-TAGTATC 590
Query 544 ACATGTAACAAAGATGAGCAA-AAAGATAAGCTTATTAATA-TTAATCTATTGGATGGAG 601
| || |||||||||||| || |||||| ||||| | |||| || | ||| ||||||
Sbjct 591 AAATACAACAAAGATGAG-AAGAAAGATCAGCTTGTGAATAATT--TG-ATTC-ATGGAG 645
Query 602 ATAATATGTGGTGGGAAAGTTTACTGGAGGCAGA 635
||||||||||| ||| ||||| || |||| |||
Sbjct 646 GTAATATGTGGTTGGAGAGTTTCCTTGAGG-AGA 678
> Ahg925795 jgi|Araly1|925795|scaffold_201356.1
Length=467
Score = 361 bits (195), Expect = 5e-99
Identities = 276/314 (88%), Gaps = 9/314 (3%)
Strand=Plus/Plus
Query 15 CAAA-GGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCA 73
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 34 CAAATGGGTTGAGAAAAGGTACATGGACTGCTGAAGAAGATATTCTCTTGAGGAAATGTA 93
Query 74 TTGATAAGTATGGAGAAGGCAAATGGCATCGA-GTTCCTTTAAGAACT-GGTCTCAATCG 131
|||||||||||||||||||||||||||| | | |||||||||||| || ||| | || ||
Sbjct 94 TTGATAAGTATGGAGAAGGCAAATGGCA-CCAGGTTCCTTTAAGAGCTGGGT-TAAACCG 151
Query 132 GTGCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGG 191
||| | ||| |||||||||| ||||||||||| || ||| |||||||||| || |||||
Sbjct 152 ATGCGGGAAGGGTTGTAGACTAAGATGGTTGAACTACTTGCAGCCAAGTATCAAAAGAGG 211
Query 192 AAAACTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATA 250
||||| | |||| || |||||||||||| | |||||||||| ||| ||||||||||| |
Sbjct 212 -AAACTTTAGCTCAGACGAAGTTGATCTTCTCCTTCGCCTTCGTAAGCTTCTAGGAAACA 270
Query 251 GGTGGTC-CTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTAC 309
||||||| | |||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 GGTGGTCAC-TGATTGCCGGTAGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTAC 329
Query 310 TGGAACACTCATTT 323
|||||||| |||||
Sbjct 330 TGGAACACCCATTT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5