BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66380.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925797 jgi|Araly1|925797|scaffold_201358.1 555 1e-157
Ahg925796 jgi|Araly1|925796|scaffold_201357.1 503 4e-142
Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1 490 3e-138
Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1 473 3e-133
Ahg338851 jgi|Araly1|338851|fgenesh1_pg.C_scaffold_2000950 412 8e-115
> Ahg925797 jgi|Araly1|925797|scaffold_201358.1
Length=788
Score = 555 bits (300), Expect = 1e-157
Identities = 381/420 (91%), Gaps = 6/420 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 22 ATGGAAGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 81
Query 61 TTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCT 120
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 82 TTGAGGCAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTGAGAGCT 141
Query 121 GGGCTAAATCGGTGCAGGAAA-AGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAG 179
|||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 142 GGGCTAAACCGGTGCAG-AAAGAGTTGTAGACTAAGATGGTTAAACTATTTAAAGCCAAG 200
Query 180 TATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCT 239
||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 201 TATCAAGAGGGGAAGATTTAGCTCTGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCT 260
Query 240 TCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGT 299
||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 261 TCTCGGAAATAGGTGGTCCCTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATGT 320
Query 300 CAAGAACTACTGGAACACCCATCTGAGTAAGAAGCATGAACCGTGTTGTAAAACTAAGAT 359
||| || ||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||
Sbjct 321 CAAAAATTACTGGAACACCCATCTAAGTAAGAAACATGAACCATGTTGTAAGACTAAAAT 380
Query 360 -AAAAAGGATAAATATTATAACCCCTCCTA-ATACACCGGCCCAAAAAGTCGATATTTTT 417
|||||| | ||| || || ||||||||| | ||||||| ||||||| ||||| |||||
Sbjct 381 GAAAAAGAA-AAACATCATTTCCCCTCCTACA-ACACCGGTCCAAAAAATCGATGTTTTT 438
> Ahg925796 jgi|Araly1|925796|scaffold_201357.1
Length=789
Score = 503 bits (272), Expect = 4e-142
Identities = 371/419 (89%), Gaps = 5/419 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
||||||| | | ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 23 ATGGAGGCTACTTCCAATGGGTTGACGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 82
Query 61 TTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCT 120
|||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 83 TTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTAAGAGCT 142
Query 121 GGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGT 180
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 143 GGGCTAAATCGATGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGT 202
Query 181 ATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCTT 240
||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 203 ATCAATAGAGGAAAATTTAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCCATAAGCTT 262
Query 241 CTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGTC 300
||||||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct 263 CTAGGAAATAGATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAAATGATGTT 322
Query 301 AAGAACTACTGGAACACCCATCTGAGTAAGAAGCATGAACCGTGTTGTAAAACTAAGATA 360
||||| ||||||||||||||| |||||| || |||||||| | ||||| | || ||
Sbjct 323 AAGAATTACTGGAACACCCATTTGAGTAGGAGGCATGAACTTTTTTGTAGTTCCAAAATG 382
Query 361 AAAAGGATAAATATTA-TAACCCCTCCTA-ATACACCGGCCCAAAAAGTCGATATTTTT 417
|||| || ||| |||| | ||||||||| | ||||| | ||||||| |||| | ||||
Sbjct 383 AAAACGAAAAACATTACTT-CCCCTCCTACA-ACACCTGTCCAAAAAATCGA-AGTTTT 438
> Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1
Length=903
Score = 490 bits (265), Expect = 3e-138
Identities = 342/379 (90%), Gaps = 6/379 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCCAAAGGGTTGA-GGAAAGGTGCATGGACTGCTGAAGAAGATAGTCT 59
||||||||||||||||||||| | | | |||||||| |||||||||||||||||||||||
Sbjct 51 ATGGAGGGTTCGTCCAAAGGGCT-ACGAAAAGGTGCTTGGACTGCTGAAGAAGATAGTCT 109
Query 60 CTTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGC 119
||||| ||||| ||| ||||| ||| |||||||||||||| ||||||||| |||||||
Sbjct 110 TTTGAGACAGTGCATTAATAAGTTTGGTGAAGGCAAATGGCACCAAGTTCCTGTAAGAGC 169
Query 120 TGGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAG 179
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 170 TGGGCTAAACCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAG 229
Query 180 TATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCT 239
|||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct 230 TATCAAGAGAGGAAAACTTAGCTCTGATGAAGTCGATCTTCTTCTTCGCCTTCATAGGCT 289
Query 240 TCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGT 299
|||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||
Sbjct 290 TCTAGGAAATAGGTGGTCTTTAATTGCTGGAAGATTACCTGGTCGGACCGCAAATGATGT 349
Query 300 CAAGAACTACTGGAACACCCATCTGAGTAAGAAGCATGAACCGTGTTGTAAAA-CTAAGA 358
|||||| ||||||||||| |||||||||||||| |||||||| |||||||| | | ||||
Sbjct 350 CAAGAATTACTGGAACACTCATCTGAGTAAGAAACATGAACCATGTTGTAAGATC-AAGA 408
Query 359 T-AAAAAGGATAAATATTA 376
| |||||| | ||| ||||
Sbjct 409 TGAAAAAGAA-AAACATTA 426
> Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1
Length=750
Score = 473 bits (256), Expect = 3e-133
Identities = 359/408 (88%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 15 CAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGTAT 74
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGCAT 74
Query 75 TGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCTGGGCTAAATCGGTG 134
|| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 75 TGATAAGTATGGAGAAAGCAAATGGCACCAGGTTCCTTTAAGAGCTGGGCTAAATCGGTG 134
Query 135 CAGGAAA-AGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAAGAGAGGAA 193
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 135 CAG-AAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
Query 194 AATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCTTCTAGGAAATAGGT 253
||||| | ||||||||||| || ||||||||||| || || ||||||||||||||||| |
Sbjct 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
Query 254 GGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGTCAAGAACTACTGGA 313
|||||||||||||||||||||| ||||||||||| ||||||||| ||||||| || ||||
Sbjct 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
Query 314 ACACCCATCTGAGTAAGAAGCATGA--ACCG-TGTTGTAAAACTAAGATAA-AAAGGATA 369
|||||||| |||||||||||||||| | | ||| |||| || ||||| | ||| | |
Sbjct 314 ACACCCATTTGAGTAAGAAGCATGATGAACTATGTCGTAAGACGAAGATGATAAAC-AGA 372
Query 370 AATATTA-TAACCCCTCCTAATACACCGGCCCAAAAAGTCGATATTTT 416
|| |||| | ||| ||||| ||| ||||||||||| ||||| ||||
Sbjct 373 AACATTACTT-CCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTT 419
> Ahg338851 jgi|Araly1|338851|fgenesh1_pg.C_scaffold_2000950
Length=768
Score = 412 bits (223), Expect = 8e-115
Identities = 310/352 (88%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
Query 61 TTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAG-TTCCTTTAAGAGC 119
|||||||| ||||||| ||| |||||||||||||||||| | ||| |||||||||||||
Sbjct 61 TTGAGGCAATGTATTGATAAATATGGAGAAGGCAAATGGAA-CAAACTTCCTTTAAGAGC 119
Query 120 TGGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAG 179
|||| |||| || ||||| || || |||||| ||||||||| ||||| || ||||||||
Sbjct 120 TGGGTTAAACCGATGCAGTAAGAGCTGTAGAGAAAGATGGTTGAACTACTTAAAGCCAAG 179
Query 180 TATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCT 239
|||||| |||||||||||| | || || |||||||||||||| ||||| |||||||||||
Sbjct 180 TATCAAAAGAGGAAAATTTGGCTCGGACGAAGTTGATCTTCTCCTTCGCCTTCATAAGCT 239
Query 240 TCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATG 298
| |||||||||||||||| || ||||||||| |||| |||||||| |||||||||||||
Sbjct 240 TTTAGGAAATAGGTGGTCACTC-ATTGCTGGTAGATTGCCTGGTCGAACCGCTAATGATG 298
Query 299 TCAAGAACTACTGGAACACCCATCT-GAGTAAGAAGCATGAACCGTGTTGTA 349
||||||| ||||||| ||| ||| | | |||||||||| |||||||||||||
Sbjct 299 TCAAGAATTACTGGACCACTCATTTCG-GTAAGAAGCAAGAACCGTGTTGTA 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15109613244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5